Wall clock time and date at job start Tue Mar 31 2020 12:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99503 * 2 1 4 4 O 1.20822 * 120.00359 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99627 * 180.02562 * 3 2 1 6 6 C 1.50706 * 109.47089 * 179.97438 * 5 3 2 7 7 C 1.38248 * 120.00155 * 265.83329 * 6 5 3 8 8 C 1.38214 * 120.00127 * 180.25118 * 7 6 5 9 9 C 1.38264 * 119.99879 * 359.79450 * 8 7 6 10 10 C 1.38213 * 119.99850 * 359.95802 * 9 8 7 11 11 C 1.38217 * 119.99664 * 85.60781 * 6 5 3 12 12 C 1.50702 * 120.00344 * 359.97438 * 11 6 5 13 13 N 1.46896 * 109.47208 * 214.15942 * 12 11 6 14 14 C 1.47898 * 111.00266 * 281.75933 * 13 12 11 15 15 C 1.53990 * 107.06142 * 145.84556 * 14 13 12 16 16 C 1.54596 * 105.22597 * 358.72561 * 15 14 13 17 17 O 1.42897 * 110.72602 * 96.45287 * 16 15 14 18 18 C 1.50698 * 110.72215 * 219.73777 * 16 15 14 19 19 H 1.08005 * 120.00204 * 118.54603 * 18 16 15 20 20 C 1.37876 * 119.99916 * 298.54448 * 18 16 15 21 21 N 1.31517 * 120.00138 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00145 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47262 * 59.99743 * 22 20 18 24 24 H 1.48500 * 109.47489 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47214 * 299.99842 * 22 20 18 26 26 C 1.48534 * 110.99976 * 39.15673 * 13 12 11 27 27 H 1.09003 * 109.47267 * 299.99955 * 1 2 3 28 28 H 1.09003 * 109.47519 * 59.99985 * 1 2 3 29 29 H 1.08999 * 109.46863 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47514 * 59.99897 * 5 3 2 31 31 H 1.09004 * 109.47379 * 299.99799 * 5 3 2 32 32 H 1.07998 * 120.00050 * 0.02788 * 7 6 5 33 33 H 1.07994 * 120.00303 * 179.77398 * 8 7 6 34 34 H 1.07999 * 120.00174 * 179.97438 * 9 8 7 35 35 H 1.07995 * 120.00186 * 179.97438 * 10 9 8 36 36 H 1.08993 * 109.47016 * 94.15375 * 12 11 6 37 37 H 1.09006 * 109.46989 * 334.15679 * 12 11 6 38 38 H 1.09000 * 109.91397 * 26.48520 * 14 13 12 39 39 H 1.09001 * 110.07681 * 265.29099 * 14 13 12 40 40 H 1.08995 * 110.30667 * 117.69182 * 15 14 13 41 41 H 1.09006 * 110.30745 * 239.76226 * 15 14 13 42 42 H 0.96699 * 114.00229 * 61.44920 * 17 16 15 43 43 H 0.96999 * 119.99944 * 179.97438 * 21 20 18 44 44 H 1.09007 * 110.66717 * 318.70958 * 26 13 12 45 45 H 1.09000 * 110.66917 * 81.84477 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9935 2.7202 -0.0011 7 6 4.2724 3.3582 -1.1954 8 6 4.6693 4.6821 -1.1955 9 6 4.7832 5.3697 -0.0014 10 6 4.4994 4.7334 1.1922 11 6 4.1019 3.4091 1.1922 12 6 3.7924 2.7154 2.4937 13 7 3.1881 3.6743 3.4282 14 6 4.2185 4.5447 4.0346 15 6 3.5762 5.9289 4.2412 16 6 2.1391 5.7964 3.6871 17 8 1.2144 5.5191 4.7407 18 6 1.7392 7.0417 2.9386 19 1 1.4941 6.9853 1.8883 20 6 1.6861 8.2532 3.5947 21 7 1.9840 8.3219 4.8739 22 14 1.1898 9.7968 2.6672 23 1 -0.1794 9.6258 2.1184 24 1 1.2114 10.9586 3.5919 25 1 2.1434 10.0334 1.5536 26 6 2.2514 4.5864 2.7232 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9563 0.7807 0.8892 32 1 4.1837 2.8210 -2.1281 33 1 4.8907 5.1794 -2.1282 34 1 5.0937 6.4041 -0.0014 35 1 4.5887 5.2703 2.1250 36 1 4.7132 2.3207 2.9230 37 1 3.0959 1.8966 2.3124 38 1 5.0746 4.6287 3.3651 39 1 4.5363 4.1360 4.9938 40 1 3.5512 6.1799 5.3015 41 1 4.1271 6.6883 3.6861 42 1 1.1660 6.2115 5.4139 43 1 1.9471 9.1743 5.3354 44 1 2.6659 4.8973 1.7642 45 1 1.2801 4.1107 2.5877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829991009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:41 Heat of formation + Delta-G solvation = -80.114681 kcal Electronic energy + Delta-G solvation = -28419.582198 eV Core-core repulsion = 24596.043871 eV Total energy + Delta-G solvation = -3823.538326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79126 -39.84317 -37.78577 -36.40385 -34.87573 -33.23624 -32.06245 -31.22005 -29.39434 -28.59000 -27.98420 -26.80222 -25.66048 -23.97059 -22.28305 -21.28825 -20.70747 -19.76452 -19.27726 -17.62136 -17.00682 -16.77482 -16.60658 -16.10161 -15.38523 -15.09044 -14.97805 -14.77746 -14.08895 -13.91591 -13.62786 -13.42979 -13.33818 -13.02032 -12.88876 -12.73108 -12.18043 -12.09680 -12.06035 -11.80414 -11.38284 -11.24694 -11.15487 -10.97292 -10.80653 -10.77889 -10.68746 -10.59708 -10.44307 -10.40956 -10.17420 -9.75165 -9.07920 -8.56044 -8.52908 -8.28456 -8.03956 -7.60811 -6.15177 -4.22488 1.44451 1.60867 2.26267 2.77375 3.26882 3.31531 3.35644 3.97008 4.34194 4.54391 4.72037 4.88278 4.94863 5.06025 5.07145 5.12693 5.15348 5.22524 5.28533 5.35050 5.48671 5.49607 5.65500 5.73347 5.83173 5.88651 5.98654 6.11006 6.17069 6.23724 6.30060 6.39832 6.58320 6.62649 6.69490 6.78488 6.81879 7.00589 7.08642 7.21521 7.42969 7.55884 7.61753 7.76277 7.79542 7.88137 8.27626 8.80700 9.46159 9.62804 10.91821 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.004565 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.578032 B = 6132.787534 C = 6486.690476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.454 3.546 4 O -0.481 6.481 5 C -0.070 4.070 6 C -0.082 4.082 7 C -0.110 4.110 8 C -0.125 4.125 9 C -0.111 4.111 10 C -0.116 4.116 11 C -0.092 4.092 12 C 0.079 3.921 13 N -0.505 5.505 14 C 0.020 3.980 15 C -0.131 4.131 16 C 0.258 3.742 17 O -0.581 6.581 18 C -0.533 4.533 19 H 0.059 0.941 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.040 3.960 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.375 0.625 43 H 0.266 0.734 44 H 0.072 0.928 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.075 -13.694 -9.599 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.295 3.705 4 O -0.366 6.366 5 C -0.107 4.107 6 C -0.083 4.083 7 C -0.128 4.128 8 C -0.143 4.143 9 C -0.129 4.129 10 C -0.133 4.133 11 C -0.093 4.093 12 C -0.050 4.050 13 N -0.227 5.227 14 C -0.108 4.108 15 C -0.170 4.170 16 C 0.217 3.783 17 O -0.388 6.388 18 C -0.571 4.571 19 H 0.077 0.923 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.087 4.087 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.166 0.834 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.224 0.776 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.481 -14.130 -9.370 17.819 hybrid contribution -0.003 2.005 -0.855 2.180 sum 5.478 -12.125 -10.225 16.780 Atomic orbital electron populations 1.23248 0.76331 1.03393 1.02848 1.86470 1.23472 1.33686 1.84654 1.23681 0.91920 0.81521 0.73384 1.90774 1.66765 1.36017 1.43067 1.20282 0.88083 0.96096 1.06272 1.18990 1.02190 0.93646 0.93443 1.20834 1.00219 0.95115 0.96612 1.21035 1.00856 0.94432 0.97981 1.21193 0.99442 0.99858 0.92430 1.21749 0.97126 0.94327 1.00116 1.20503 0.97973 0.95046 0.95807 1.21424 0.99036 0.96354 0.88178 1.65045 1.13987 1.16088 1.27625 1.23228 0.93804 0.95332 0.98420 1.22967 0.99441 0.92413 1.02139 1.19372 0.84757 0.89845 0.84285 1.86165 1.64822 1.49335 1.38519 1.21564 1.46710 0.92235 0.96626 0.92268 1.24972 0.94095 0.98982 0.94963 1.69732 1.48706 1.26387 1.08694 0.86595 0.79382 0.82066 0.79612 1.20106 1.21188 1.20198 1.23675 0.95464 0.92865 0.96654 0.91578 0.92034 0.88299 0.87104 0.86792 0.86576 0.86357 0.85948 0.83401 0.90179 0.90776 0.94031 0.91782 0.91393 0.92081 0.77580 0.92416 0.91030 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.43 10.57 -39.26 -0.41 -4.84 16 3 C 0.45 6.31 7.26 36.00 0.26 6.57 16 4 O -0.48 -8.71 15.78 -18.75 -0.30 -9.01 16 5 C -0.07 -0.78 5.25 -29.03 -0.15 -0.93 16 6 C -0.08 -1.16 4.37 -104.62 -0.46 -1.61 16 7 C -0.11 -1.46 9.68 -39.59 -0.38 -1.85 16 8 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 9 C -0.11 -1.75 10.05 -39.58 -0.40 -2.15 16 10 C -0.12 -2.01 6.23 -39.58 -0.25 -2.26 16 11 C -0.09 -1.49 4.60 -104.62 -0.48 -1.97 16 12 C 0.08 1.29 5.23 -4.98 -0.03 1.26 16 13 N -0.51 -10.22 5.54 -231.78 -1.28 -11.50 16 14 C 0.02 0.38 5.70 -2.76 -0.02 0.36 16 15 C -0.13 -3.03 4.71 -25.38 -0.12 -3.15 16 16 C 0.26 6.60 0.96 -89.82 -0.09 6.52 16 17 O -0.58 -15.93 13.09 -35.23 -0.46 -16.39 16 18 C -0.53 -14.66 8.14 -34.44 -0.28 -14.94 16 19 H 0.06 1.66 7.78 -52.48 -0.41 1.25 16 20 C 0.07 1.94 5.28 -17.82 -0.09 1.84 16 21 N -0.90 -24.20 11.02 55.43 0.61 -23.59 16 22 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.04 0.93 5.01 -1.81 -0.01 0.92 16 27 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 0.88 8.06 -51.93 -0.42 0.46 16 31 H 0.11 1.07 6.88 -51.93 -0.36 0.71 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.15 2.79 3.23 -52.49 -0.17 2.62 16 36 H 0.08 1.13 7.96 -51.93 -0.41 0.71 16 37 H 0.07 1.17 5.99 -51.93 -0.31 0.86 16 38 H 0.04 0.73 5.28 -51.93 -0.27 0.46 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.66 7.99 -51.93 -0.41 1.24 16 41 H 0.06 1.45 7.49 -51.93 -0.39 1.06 16 42 H 0.38 10.25 7.48 45.56 0.34 10.59 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.07 1.67 4.08 -51.92 -0.21 1.45 16 45 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -31.62 355.35 -8.87 -40.50 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -5.54 Total: 15.47 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.82 Total: -12.07 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.67 Total: -35.09 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.17 Total: -30.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.62 -8.87 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.617 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds