Wall clock time and date at job start Tue Mar 31 2020 12:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99503 * 2 1 4 4 O 1.20822 * 120.00359 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99627 * 180.02562 * 3 2 1 6 6 C 1.50706 * 109.47089 * 179.97438 * 5 3 2 7 7 C 1.38248 * 120.00155 * 265.83329 * 6 5 3 8 8 C 1.38214 * 120.00127 * 180.25118 * 7 6 5 9 9 C 1.38264 * 119.99879 * 359.79450 * 8 7 6 10 10 C 1.38213 * 119.99850 * 359.95802 * 9 8 7 11 11 C 1.38217 * 119.99664 * 85.60781 * 6 5 3 12 12 C 1.50702 * 120.00344 * 359.97438 * 11 6 5 13 13 N 1.46896 * 109.47208 * 214.15942 * 12 11 6 14 14 C 1.47898 * 111.00266 * 281.75933 * 13 12 11 15 15 C 1.53990 * 107.06142 * 145.84556 * 14 13 12 16 16 C 1.54596 * 105.22597 * 358.72561 * 15 14 13 17 17 O 1.42897 * 110.72602 * 96.45287 * 16 15 14 18 18 C 1.50698 * 110.72215 * 219.73777 * 16 15 14 19 19 H 1.08005 * 120.00204 * 118.54603 * 18 16 15 20 20 C 1.37876 * 119.99916 * 298.54448 * 18 16 15 21 21 N 1.31517 * 120.00138 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00145 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47262 * 59.99743 * 22 20 18 24 24 H 1.48500 * 109.47489 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47214 * 299.99842 * 22 20 18 26 26 C 1.48534 * 110.99976 * 39.15673 * 13 12 11 27 27 H 1.09003 * 109.47267 * 299.99955 * 1 2 3 28 28 H 1.09003 * 109.47519 * 59.99985 * 1 2 3 29 29 H 1.08999 * 109.46863 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47514 * 59.99897 * 5 3 2 31 31 H 1.09004 * 109.47379 * 299.99799 * 5 3 2 32 32 H 1.07998 * 120.00050 * 0.02788 * 7 6 5 33 33 H 1.07994 * 120.00303 * 179.77398 * 8 7 6 34 34 H 1.07999 * 120.00174 * 179.97438 * 9 8 7 35 35 H 1.07995 * 120.00186 * 179.97438 * 10 9 8 36 36 H 1.08993 * 109.47016 * 94.15375 * 12 11 6 37 37 H 1.09006 * 109.46989 * 334.15679 * 12 11 6 38 38 H 1.09000 * 109.91397 * 26.48520 * 14 13 12 39 39 H 1.09001 * 110.07681 * 265.29099 * 14 13 12 40 40 H 1.08995 * 110.30667 * 117.69182 * 15 14 13 41 41 H 1.09006 * 110.30745 * 239.76226 * 15 14 13 42 42 H 0.96699 * 114.00229 * 61.44920 * 17 16 15 43 43 H 0.96999 * 119.99944 * 179.97438 * 21 20 18 44 44 H 1.09007 * 110.66717 * 318.70958 * 26 13 12 45 45 H 1.09000 * 110.66917 * 81.84477 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 3.9935 2.7202 -0.0011 7 6 4.2724 3.3582 -1.1954 8 6 4.6693 4.6821 -1.1955 9 6 4.7832 5.3697 -0.0014 10 6 4.4994 4.7334 1.1922 11 6 4.1019 3.4091 1.1922 12 6 3.7924 2.7154 2.4937 13 7 3.1881 3.6743 3.4282 14 6 4.2185 4.5447 4.0346 15 6 3.5762 5.9289 4.2412 16 6 2.1391 5.7964 3.6871 17 8 1.2144 5.5191 4.7407 18 6 1.7392 7.0417 2.9386 19 1 1.4941 6.9853 1.8883 20 6 1.6861 8.2532 3.5947 21 7 1.9840 8.3219 4.8739 22 14 1.1898 9.7968 2.6672 23 1 -0.1794 9.6258 2.1184 24 1 1.2114 10.9586 3.5919 25 1 2.1434 10.0334 1.5536 26 6 2.2514 4.5864 2.7232 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9563 0.7807 0.8892 32 1 4.1837 2.8210 -2.1281 33 1 4.8907 5.1794 -2.1282 34 1 5.0937 6.4041 -0.0014 35 1 4.5887 5.2703 2.1250 36 1 4.7132 2.3207 2.9230 37 1 3.0959 1.8966 2.3124 38 1 5.0746 4.6287 3.3651 39 1 4.5363 4.1360 4.9938 40 1 3.5512 6.1799 5.3015 41 1 4.1271 6.6883 3.6861 42 1 1.1660 6.2115 5.4139 43 1 1.9471 9.1743 5.3354 44 1 2.6659 4.8973 1.7642 45 1 1.2801 4.1107 2.5877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829991009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:40 Heat of formation + Delta-G solvation = -102.170521 kcal Electronic energy + Delta-G solvation = -28420.538611 eV Core-core repulsion = 24596.043871 eV Total energy + Delta-G solvation = -3824.494739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96264 -41.09623 -39.28754 -37.48061 -36.69879 -34.35501 -34.18956 -32.67741 -30.79451 -29.86909 -29.64177 -27.77603 -27.31930 -25.69547 -23.39714 -22.56334 -21.98655 -21.51768 -20.82675 -19.01790 -18.63535 -17.96174 -17.64069 -17.24393 -16.92316 -16.83527 -16.50407 -16.21589 -15.70022 -15.32706 -14.94227 -14.77079 -14.47332 -14.36675 -14.31491 -14.08536 -13.79585 -13.37438 -13.26237 -13.10709 -12.98625 -12.92335 -12.75838 -12.54405 -12.42775 -12.36083 -12.23456 -11.99132 -11.79955 -11.78285 -11.60422 -11.52827 -11.07155 -10.61010 -10.12696 -9.70355 -9.47147 -9.18914 -8.22619 -6.37827 0.32744 0.46305 1.22520 1.36987 1.38833 1.46496 1.84902 2.36169 2.83877 3.01693 3.19821 3.56102 3.83312 3.90692 3.95951 4.04622 4.07301 4.16689 4.20401 4.29506 4.32309 4.34401 4.40229 4.47137 4.55360 4.62068 4.65346 4.71459 4.72573 4.83693 4.92022 5.08135 5.09816 5.13176 5.22547 5.41965 5.46655 5.52492 5.54231 5.60008 5.65205 5.74738 5.90759 6.09959 6.17901 6.29129 6.66686 6.77553 7.33456 7.47619 8.82776 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.004565 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.578032 B = 6132.787534 C = 6486.690476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.455 3.545 4 O -0.533 6.533 5 C -0.068 4.068 6 C -0.083 4.083 7 C -0.109 4.109 8 C -0.126 4.126 9 C -0.129 4.129 10 C -0.142 4.142 11 C -0.106 4.106 12 C 0.080 3.920 13 N -0.515 5.515 14 C 0.030 3.970 15 C -0.118 4.118 16 C 0.241 3.759 17 O -0.593 6.593 18 C -0.559 4.559 19 H 0.043 0.957 20 C 0.035 3.965 21 N -0.908 5.908 22 Si 0.953 3.047 23 H -0.279 1.279 24 H -0.276 1.276 25 H -0.270 1.270 26 C 0.057 3.943 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.136 0.864 30 H 0.152 0.848 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.371 0.629 43 H 0.269 0.731 44 H 0.073 0.927 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 -15.323 -11.356 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.299 3.701 4 O -0.422 6.422 5 C -0.104 4.104 6 C -0.084 4.084 7 C -0.126 4.126 8 C -0.144 4.144 9 C -0.147 4.147 10 C -0.160 4.160 11 C -0.108 4.108 12 C -0.048 4.048 13 N -0.237 5.237 14 C -0.097 4.097 15 C -0.156 4.156 16 C 0.202 3.798 17 O -0.401 6.401 18 C -0.597 4.597 19 H 0.061 0.939 20 C -0.166 4.166 21 N -0.547 5.547 22 Si 0.779 3.221 23 H -0.205 1.205 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.070 4.070 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.170 0.830 31 H 0.153 0.847 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.219 0.781 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.736 -15.795 -11.125 20.460 hybrid contribution -0.424 2.452 -0.351 2.513 sum 6.312 -13.343 -11.476 18.697 Atomic orbital electron populations 1.23476 0.75370 1.05559 1.01960 1.86474 1.24441 1.32730 1.84039 1.24252 0.92955 0.81138 0.71752 1.90772 1.68060 1.37662 1.45704 1.20456 0.86049 0.94623 1.09313 1.19303 1.01059 0.95192 0.92855 1.21290 0.98593 0.95023 0.97739 1.21385 0.99858 0.94903 0.98216 1.21361 1.00119 1.00300 0.92935 1.21645 0.99333 0.95154 0.99856 1.20491 0.98910 0.94810 0.96561 1.21518 1.00074 0.95277 0.87963 1.64936 1.14370 1.15793 1.28646 1.23146 0.93932 0.92977 0.99679 1.22701 0.98154 0.94493 1.00298 1.19616 0.85542 0.90429 0.84248 1.86157 1.65805 1.49264 1.38879 1.21721 1.48001 0.93785 0.96194 0.93863 1.25606 0.93812 1.01346 0.95791 1.69806 1.48404 1.27091 1.09433 0.85698 0.78714 0.78969 0.78766 1.20514 1.20073 1.19505 1.23360 0.94837 0.92294 0.96538 0.93311 0.92174 0.84591 0.82999 0.84664 0.83205 0.83683 0.85785 0.85663 0.87392 0.90293 0.91814 0.90279 0.93205 0.93438 0.78103 0.92125 0.90925 0.94659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.36 -7.95 10.57 -51.43 -0.54 -8.49 16 3 C 0.46 11.83 7.26 71.24 0.52 12.34 16 4 O -0.53 -19.21 15.78 21.98 0.35 -18.86 16 5 C -0.07 -1.27 5.25 29.10 0.15 -1.12 16 6 C -0.08 -2.15 4.37 -19.86 -0.09 -2.24 16 7 C -0.11 -2.57 9.68 22.27 0.22 -2.36 16 8 C -0.13 -3.23 10.05 22.27 0.22 -3.00 16 9 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 10 C -0.14 -4.95 6.23 22.27 0.14 -4.81 16 11 C -0.11 -3.34 4.60 -19.86 -0.09 -3.43 16 12 C 0.08 2.49 5.23 85.56 0.45 2.94 16 13 N -0.52 -20.86 5.54 -887.22 -4.91 -25.77 16 14 C 0.03 1.16 5.70 86.45 0.49 1.65 16 15 C -0.12 -5.61 4.71 31.47 0.15 -5.46 16 16 C 0.24 12.85 0.96 -10.28 -0.01 12.84 16 17 O -0.59 -33.86 13.09 -148.98 -1.95 -35.81 16 18 C -0.56 -31.88 8.14 25.60 0.21 -31.67 16 19 H 0.04 2.53 7.78 -2.91 -0.02 2.51 16 20 C 0.04 1.94 5.28 84.65 0.45 2.39 16 21 N -0.91 -49.99 11.02 21.45 0.24 -49.75 16 22 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 26 C 0.06 2.75 5.01 86.71 0.43 3.19 16 27 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.15 1.63 8.06 -2.39 -0.02 1.61 16 31 H 0.14 2.00 6.88 -2.38 -0.02 1.99 16 32 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.13 4.84 3.23 -2.91 -0.01 4.84 16 36 H 0.11 2.75 7.96 -2.39 -0.02 2.73 16 37 H 0.08 2.38 5.99 -2.38 -0.01 2.37 16 38 H 0.06 2.22 5.28 -2.39 -0.01 2.21 16 39 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.05 2.50 7.99 -2.39 -0.02 2.48 16 41 H 0.05 2.34 7.49 -2.38 -0.02 2.32 16 42 H 0.37 21.12 7.48 -74.06 -0.55 20.57 16 43 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.07 3.52 4.08 -2.38 -0.01 3.51 16 45 H 0.03 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -71.27 355.35 0.33 -70.94 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: 0.47 Total: 42.71 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 4.66 Total: -20.78 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -4.68 Total: -75.53 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: -2.15 Total: -63.16 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.27 0.33 -70.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.229 kcal (2) G-P(sol) polarization free energy of solvation -71.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds