Wall clock time and date at job start Tue Mar 31 2020 12:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00041 * 2 1 4 4 O 1.20823 * 120.00276 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99880 * 179.97438 * 3 2 1 6 6 C 1.50698 * 109.47382 * 180.02562 * 5 3 2 7 7 C 1.38255 * 120.00226 * 267.57802 * 6 5 3 8 8 C 1.38216 * 120.00362 * 179.97438 * 7 6 5 9 9 C 1.38258 * 119.99680 * 0.02562 * 8 7 6 10 10 C 1.38222 * 119.99953 * 359.70817 * 9 8 7 11 11 C 1.38214 * 119.99798 * 87.54965 * 6 5 3 12 12 C 1.50695 * 119.99891 * 0.02562 * 11 6 5 13 13 N 1.46903 * 109.47395 * 282.44410 * 12 11 6 14 14 C 1.47447 * 111.00143 * 285.40765 * 13 12 11 15 15 C 1.54318 * 107.23074 * 236.73643 * 14 13 12 16 16 C 1.55139 * 103.17691 * 337.63217 * 15 14 13 17 17 O 1.42899 * 110.98795 * 277.64676 * 16 15 14 18 18 C 1.50696 * 110.98922 * 153.83252 * 16 15 14 19 19 H 1.07999 * 120.00101 * 2.05977 * 18 16 15 20 20 C 1.37878 * 120.00062 * 182.06339 * 18 16 15 21 21 N 1.31519 * 120.00119 * 185.03930 * 20 18 16 22 22 Si 1.86802 * 119.99980 * 5.03025 * 20 18 16 23 23 H 1.48500 * 109.46677 * 90.39093 * 22 20 18 24 24 H 1.48496 * 109.47568 * 210.39033 * 22 20 18 25 25 H 1.48497 * 109.47040 * 330.39449 * 22 20 18 26 26 C 1.47842 * 111.00256 * 164.56186 * 13 12 11 27 27 H 1.08998 * 109.47015 * 59.99338 * 1 2 3 28 28 H 1.08994 * 109.47506 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46804 * 299.99545 * 1 2 3 30 30 H 1.09000 * 109.46733 * 60.00160 * 5 3 2 31 31 H 1.08999 * 109.47148 * 300.00420 * 5 3 2 32 32 H 1.08008 * 119.99734 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.00030 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.99904 * 179.97438 * 9 8 7 35 35 H 1.07999 * 119.99804 * 180.29852 * 10 9 8 36 36 H 1.09003 * 109.46784 * 162.45255 * 12 11 6 37 37 H 1.08995 * 109.47478 * 42.44964 * 12 11 6 38 38 H 1.08999 * 109.88584 * 117.33496 * 14 13 12 39 39 H 1.09002 * 110.02040 * 356.22127 * 14 13 12 40 40 H 1.09007 * 110.70320 * 96.09990 * 15 14 13 41 41 H 1.09001 * 110.70537 * 219.15482 * 15 14 13 42 42 H 0.96704 * 114.00138 * 298.54829 * 17 16 15 43 43 H 0.97003 * 119.99846 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.37178 * 265.19893 * 26 13 12 45 45 H 1.08996 * 110.37446 * 27.42476 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 3.9937 2.7199 0.0011 7 6 4.2388 3.3688 -1.1949 8 6 4.6302 4.6943 -1.1945 9 6 4.7773 5.3712 0.0020 10 6 4.5270 4.7241 1.1975 11 6 4.1402 3.3968 1.1972 12 6 3.8731 2.6895 2.5008 13 7 2.4233 2.5927 2.7173 14 6 1.8601 3.8963 3.1143 15 6 1.1449 3.6927 4.4664 16 6 0.8512 2.1694 4.4853 17 8 -0.3352 1.8678 3.7482 18 6 0.7512 1.6565 5.8987 19 1 0.8480 2.3399 6.7294 20 6 0.5360 0.3146 6.1315 21 7 0.3498 -0.1182 7.3594 22 14 0.5088 -0.8886 4.7028 23 1 1.8791 -1.4114 4.4700 24 1 -0.4034 -2.0159 5.0223 25 1 0.0293 -0.1949 3.4805 26 6 2.1097 1.6040 3.7708 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.9564 0.7805 -0.8892 31 1 3.9557 0.7808 0.8908 32 1 4.1243 2.8398 -2.1296 33 1 4.8220 5.2010 -2.1287 34 1 5.0836 6.4069 0.0024 35 1 4.6372 5.2543 2.1319 36 1 4.3257 3.2509 3.3181 37 1 4.3028 1.6885 2.4658 38 1 1.1456 4.2353 2.3642 39 1 2.6587 4.6301 3.2239 40 1 1.7986 3.9694 5.2937 41 1 0.2176 4.2645 4.5019 42 1 -1.1338 2.2841 4.1006 43 1 0.1981 -1.0622 7.5231 44 1 1.8895 0.6333 3.3267 45 1 2.9402 1.5201 4.4718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829991010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:46 Heat of formation + Delta-G solvation = -88.395979 kcal Electronic energy + Delta-G solvation = -28817.737606 eV Core-core repulsion = 24993.840175 eV Total energy + Delta-G solvation = -3823.897430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.36002 -39.27845 -38.28802 -35.97299 -35.05476 -33.04313 -32.34133 -31.85646 -29.55210 -28.58319 -28.27879 -26.67167 -25.50928 -23.87688 -22.29574 -21.54632 -20.57798 -19.86895 -19.45718 -17.25545 -17.21006 -16.53771 -16.36204 -15.94568 -15.51272 -15.38696 -14.99293 -14.93605 -14.41834 -13.97262 -13.54710 -13.23557 -13.22077 -13.09665 -12.76658 -12.62296 -12.44163 -12.33711 -12.09068 -11.89689 -11.68963 -11.55285 -11.35149 -11.25208 -10.98946 -10.82188 -10.48512 -10.37584 -10.33082 -10.13458 -10.00494 -9.88208 -8.95022 -8.77222 -8.67537 -8.60430 -8.25795 -7.67670 -6.18127 -4.28798 1.34211 1.44290 2.75056 3.12504 3.33987 3.44853 3.69150 3.84645 4.47254 4.63052 4.64683 4.83515 4.94288 5.05885 5.13940 5.18437 5.27292 5.32311 5.42472 5.43019 5.44995 5.48904 5.59250 5.61717 5.68714 5.78525 5.83938 5.95055 5.98142 6.08952 6.09219 6.29425 6.35159 6.47525 6.52055 6.55527 6.70745 6.79092 6.83064 6.84631 7.04400 7.17036 7.43743 7.64672 7.68599 8.25272 8.25875 8.79128 9.03803 9.47323 10.92387 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.005474 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.333491 B = 5113.552385 C = 6156.799731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.369 6.369 3 C 0.467 3.533 4 O -0.473 6.473 5 C -0.070 4.070 6 C -0.055 4.055 7 C -0.107 4.107 8 C -0.125 4.125 9 C -0.118 4.118 10 C -0.113 4.113 11 C -0.049 4.049 12 C 0.076 3.924 13 N -0.513 5.513 14 C 0.058 3.942 15 C -0.157 4.157 16 C 0.224 3.776 17 O -0.563 6.563 18 C -0.550 4.550 19 H 0.075 0.925 20 C 0.087 3.913 21 N -0.891 5.891 22 Si 0.868 3.132 23 H -0.287 1.287 24 H -0.299 1.299 25 H -0.216 1.216 26 C 0.051 3.949 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.358 0.642 43 H 0.265 0.735 44 H 0.068 0.932 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.977 5.285 -16.563 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.286 6.286 3 C 0.308 3.692 4 O -0.356 6.356 5 C -0.108 4.108 6 C -0.056 4.056 7 C -0.125 4.125 8 C -0.143 4.143 9 C -0.136 4.136 10 C -0.132 4.132 11 C -0.049 4.049 12 C -0.052 4.052 13 N -0.236 5.236 14 C -0.070 4.070 15 C -0.196 4.196 16 C 0.183 3.817 17 O -0.369 6.369 18 C -0.588 4.588 19 H 0.093 0.907 20 C -0.117 4.117 21 N -0.527 5.527 22 Si 0.696 3.304 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.139 1.139 26 C -0.076 4.076 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.204 0.796 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.907 4.948 -17.276 19.633 hybrid contribution -0.149 -0.074 0.707 0.727 sum 7.758 4.874 -16.569 18.933 Atomic orbital electron populations 1.23204 0.76395 1.03006 1.02868 1.86407 1.23442 1.33905 1.84886 1.23047 0.91133 0.81570 0.73491 1.90663 1.66502 1.35892 1.42581 1.20189 0.89573 0.95369 1.05650 1.19033 0.99398 0.94132 0.93004 1.20925 0.99637 0.94965 0.96965 1.21004 1.00915 0.94555 0.97876 1.21068 1.00428 0.99584 0.92550 1.21014 1.00091 0.93939 0.98111 1.19666 0.96935 0.93838 0.94511 1.21310 0.90980 0.99659 0.93209 1.63632 1.08659 1.07388 1.43957 1.22663 0.97837 0.90049 0.96462 1.23332 1.00193 0.99971 0.96057 1.20039 0.82780 0.88950 0.89899 1.86556 1.17540 1.74790 1.57996 1.21300 1.52491 0.94433 0.90572 0.90733 1.24982 0.92498 0.98580 0.95688 1.69954 1.46923 1.15566 1.20298 0.87164 0.77618 0.79764 0.85894 1.21434 1.22671 1.13912 1.23483 0.97760 0.95331 0.91045 0.92726 0.88972 0.90625 0.87900 0.87182 0.86392 0.86362 0.86361 0.86302 0.93708 0.90400 0.91256 0.94187 0.91625 0.91946 0.79577 0.92525 0.91381 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.56 101.05 1.07 1.65 16 2 O -0.37 -6.04 10.57 -39.25 -0.41 -6.45 16 3 C 0.47 7.72 7.18 36.01 0.26 7.98 16 4 O -0.47 -9.11 15.22 -18.75 -0.29 -9.40 16 5 C -0.07 -0.92 5.49 -29.04 -0.16 -1.08 16 6 C -0.06 -0.75 4.37 -104.63 -0.46 -1.20 16 7 C -0.11 -1.28 9.69 -39.58 -0.38 -1.66 16 8 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 9 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 10 C -0.11 -1.45 9.13 -39.58 -0.36 -1.81 16 11 C -0.05 -0.70 5.04 -104.63 -0.53 -1.22 16 12 C 0.08 1.19 4.06 -4.98 -0.02 1.17 16 13 N -0.51 -9.58 3.74 -232.38 -0.87 -10.45 16 14 C 0.06 1.06 6.49 -2.83 -0.02 1.04 16 15 C -0.16 -3.13 6.10 -24.91 -0.15 -3.28 16 16 C 0.22 5.15 0.69 -89.38 -0.06 5.09 16 17 O -0.56 -12.91 10.23 -35.23 -0.36 -13.27 16 18 C -0.55 -14.99 8.87 -34.44 -0.31 -15.30 16 19 H 0.07 2.21 8.02 -52.49 -0.42 1.79 16 20 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 21 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 22 Si 0.87 21.71 24.28 -169.99 -4.13 17.58 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.22 -5.31 5.14 56.52 0.29 -5.02 16 26 C 0.05 1.10 4.72 -2.05 -0.01 1.09 16 27 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 31 H 0.11 1.40 6.27 -51.93 -0.33 1.07 16 32 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.39 7.87 -52.49 -0.41 0.97 16 36 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 37 H 0.08 1.14 6.42 -51.93 -0.33 0.81 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.04 0.66 6.71 -51.93 -0.35 0.31 16 40 H 0.07 1.32 8.02 -51.92 -0.42 0.90 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.36 7.25 9.11 45.56 0.41 7.67 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.07 1.58 5.04 -51.93 -0.26 1.32 16 45 H 0.06 1.21 7.71 -51.93 -0.40 0.81 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -33.13 359.36 -7.84 -40.97 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.95 Total: 10.37 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.02 Total: -8.71 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.10 Total: -36.50 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.06 Total: -29.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.13 Total: 17.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.13 -7.84 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.425 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds