Wall clock time and date at job start Tue Mar 31 2020 12:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00041 * 2 1 4 4 O 1.20823 * 120.00276 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99880 * 179.97438 * 3 2 1 6 6 C 1.50698 * 109.47382 * 180.02562 * 5 3 2 7 7 C 1.38255 * 120.00226 * 267.57802 * 6 5 3 8 8 C 1.38216 * 120.00362 * 179.97438 * 7 6 5 9 9 C 1.38258 * 119.99680 * 0.02562 * 8 7 6 10 10 C 1.38222 * 119.99953 * 359.70817 * 9 8 7 11 11 C 1.38214 * 119.99798 * 87.54965 * 6 5 3 12 12 C 1.50695 * 119.99891 * 0.02562 * 11 6 5 13 13 N 1.46903 * 109.47395 * 282.44410 * 12 11 6 14 14 C 1.47447 * 111.00143 * 285.40765 * 13 12 11 15 15 C 1.54318 * 107.23074 * 236.73643 * 14 13 12 16 16 C 1.55139 * 103.17691 * 337.63217 * 15 14 13 17 17 O 1.42899 * 110.98795 * 277.64676 * 16 15 14 18 18 C 1.50696 * 110.98922 * 153.83252 * 16 15 14 19 19 H 1.07999 * 120.00101 * 2.05977 * 18 16 15 20 20 C 1.37878 * 120.00062 * 182.06339 * 18 16 15 21 21 N 1.31519 * 120.00119 * 185.03930 * 20 18 16 22 22 Si 1.86802 * 119.99980 * 5.03025 * 20 18 16 23 23 H 1.48500 * 109.46677 * 90.39093 * 22 20 18 24 24 H 1.48496 * 109.47568 * 210.39033 * 22 20 18 25 25 H 1.48497 * 109.47040 * 330.39449 * 22 20 18 26 26 C 1.47842 * 111.00256 * 164.56186 * 13 12 11 27 27 H 1.08998 * 109.47015 * 59.99338 * 1 2 3 28 28 H 1.08994 * 109.47506 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46804 * 299.99545 * 1 2 3 30 30 H 1.09000 * 109.46733 * 60.00160 * 5 3 2 31 31 H 1.08999 * 109.47148 * 300.00420 * 5 3 2 32 32 H 1.08008 * 119.99734 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.00030 * 179.97438 * 8 7 6 34 34 H 1.08001 * 119.99904 * 179.97438 * 9 8 7 35 35 H 1.07999 * 119.99804 * 180.29852 * 10 9 8 36 36 H 1.09003 * 109.46784 * 162.45255 * 12 11 6 37 37 H 1.08995 * 109.47478 * 42.44964 * 12 11 6 38 38 H 1.08999 * 109.88584 * 117.33496 * 14 13 12 39 39 H 1.09002 * 110.02040 * 356.22127 * 14 13 12 40 40 H 1.09007 * 110.70320 * 96.09990 * 15 14 13 41 41 H 1.09001 * 110.70537 * 219.15482 * 15 14 13 42 42 H 0.96704 * 114.00138 * 298.54829 * 17 16 15 43 43 H 0.97003 * 119.99846 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.37178 * 265.19893 * 26 13 12 45 45 H 1.08996 * 110.37446 * 27.42476 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 3.9937 2.7199 0.0011 7 6 4.2388 3.3688 -1.1949 8 6 4.6302 4.6943 -1.1945 9 6 4.7773 5.3712 0.0020 10 6 4.5270 4.7241 1.1975 11 6 4.1402 3.3968 1.1972 12 6 3.8731 2.6895 2.5008 13 7 2.4233 2.5927 2.7173 14 6 1.8601 3.8963 3.1143 15 6 1.1449 3.6927 4.4664 16 6 0.8512 2.1694 4.4853 17 8 -0.3352 1.8678 3.7482 18 6 0.7512 1.6565 5.8987 19 1 0.8480 2.3399 6.7294 20 6 0.5360 0.3146 6.1315 21 7 0.3498 -0.1182 7.3594 22 14 0.5088 -0.8886 4.7028 23 1 1.8791 -1.4114 4.4700 24 1 -0.4034 -2.0159 5.0223 25 1 0.0293 -0.1949 3.4805 26 6 2.1097 1.6040 3.7708 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.9564 0.7805 -0.8892 31 1 3.9557 0.7808 0.8908 32 1 4.1243 2.8398 -2.1296 33 1 4.8220 5.2010 -2.1287 34 1 5.0836 6.4069 0.0024 35 1 4.6372 5.2543 2.1319 36 1 4.3257 3.2509 3.3181 37 1 4.3028 1.6885 2.4658 38 1 1.1456 4.2353 2.3642 39 1 2.6587 4.6301 3.2239 40 1 1.7986 3.9694 5.2937 41 1 0.2176 4.2645 4.5019 42 1 -1.1338 2.2841 4.1006 43 1 0.1981 -1.0622 7.5231 44 1 1.8895 0.6333 3.3267 45 1 2.9402 1.5201 4.4718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829991010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:45 Heat of formation + Delta-G solvation = -111.113353 kcal Electronic energy + Delta-G solvation = -28818.722705 eV Core-core repulsion = 24993.840175 eV Total energy + Delta-G solvation = -3824.882530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51661 -40.54052 -39.69769 -37.22451 -36.68183 -34.49953 -34.09703 -33.06020 -30.92569 -30.10628 -29.63135 -27.81765 -26.94458 -25.58793 -23.28204 -22.71862 -21.95209 -21.51247 -20.78186 -19.25686 -18.44601 -17.62204 -17.58545 -17.09784 -17.02791 -16.94927 -16.48903 -16.04297 -15.86702 -15.72972 -14.97412 -14.65941 -14.42806 -14.28871 -14.10955 -14.03085 -13.94086 -13.68510 -13.36003 -13.26290 -13.03940 -13.00338 -12.85791 -12.75232 -12.53245 -12.22697 -11.98684 -11.91930 -11.69275 -11.59922 -11.53517 -11.27739 -10.95241 -10.78642 -10.18872 -9.67277 -9.54644 -9.16156 -8.39737 -6.52582 0.41449 0.53003 1.32452 1.39298 1.52890 1.67536 2.03352 2.37365 2.83149 2.97983 3.27302 3.59461 3.67779 3.84532 3.93427 4.00793 4.10008 4.14389 4.21488 4.28374 4.34291 4.35632 4.41274 4.43598 4.47932 4.61758 4.64734 4.72280 4.74232 4.78660 4.80731 4.89152 5.09457 5.15684 5.17789 5.20781 5.41779 5.48922 5.59221 5.64940 5.65686 5.75594 5.98831 6.10187 6.16055 6.23734 6.58463 7.03193 7.16317 7.33794 8.74525 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.005474 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.333491 B = 5113.552385 C = 6156.799731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.375 6.375 3 C 0.463 3.537 4 O -0.506 6.506 5 C -0.069 4.069 6 C -0.069 4.069 7 C -0.113 4.113 8 C -0.124 4.124 9 C -0.120 4.120 10 C -0.124 4.124 11 C -0.069 4.069 12 C 0.076 3.924 13 N -0.513 5.513 14 C 0.069 3.931 15 C -0.151 4.151 16 C 0.219 3.781 17 O -0.569 6.569 18 C -0.548 4.548 19 H 0.039 0.961 20 C 0.040 3.960 21 N -0.936 5.936 22 Si 0.928 3.072 23 H -0.281 1.281 24 H -0.303 1.303 25 H -0.210 1.210 26 C 0.058 3.942 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.043 0.957 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.368 0.632 43 H 0.267 0.733 44 H 0.054 0.946 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.266 5.951 -19.482 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.305 3.695 4 O -0.392 6.392 5 C -0.106 4.106 6 C -0.069 4.069 7 C -0.131 4.131 8 C -0.142 4.142 9 C -0.138 4.138 10 C -0.142 4.142 11 C -0.069 4.069 12 C -0.052 4.052 13 N -0.237 5.237 14 C -0.059 4.059 15 C -0.190 4.190 16 C 0.178 3.822 17 O -0.375 6.375 18 C -0.586 4.586 19 H 0.057 0.943 20 C -0.160 4.160 21 N -0.575 5.575 22 Si 0.754 3.246 23 H -0.208 1.208 24 H -0.231 1.231 25 H -0.133 1.133 26 C -0.069 4.069 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.061 0.939 30 H 0.155 0.845 31 H 0.129 0.871 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.216 0.784 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.206 5.625 -20.205 22.905 hybrid contribution -0.551 -0.178 1.615 1.716 sum 8.655 5.447 -18.590 21.217 Atomic orbital electron populations 1.23299 0.75913 1.04569 1.01845 1.86420 1.24083 1.34092 1.84693 1.23764 0.92406 0.81044 0.72245 1.90641 1.67480 1.36803 1.44291 1.20321 0.87107 0.95852 1.07332 1.19176 0.99910 0.94408 0.93433 1.21236 0.99085 0.95569 0.97210 1.21400 0.99506 0.94329 0.99003 1.21399 0.99552 1.00753 0.92090 1.21192 1.00247 0.93564 0.99227 1.19605 0.98812 0.94587 0.93907 1.21366 0.88751 1.00550 0.94513 1.63557 1.11145 1.06785 1.42232 1.22540 0.98089 0.90491 0.94753 1.23250 1.00875 0.97809 0.97070 1.19973 0.83400 0.91045 0.87778 1.86521 1.18029 1.75258 1.57710 1.21552 1.51179 0.93822 0.92026 0.94259 1.25691 0.92430 1.00300 0.97585 1.70067 1.49099 1.16029 1.22283 0.86238 0.77653 0.77511 0.83207 1.20802 1.23089 1.13266 1.23217 0.96696 0.95562 0.91434 0.91495 0.86194 0.93852 0.84470 0.87092 0.84380 0.83618 0.83935 0.85658 0.93244 0.89856 0.92259 0.91989 0.92037 0.91016 0.78423 0.92415 0.92743 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.06 10.56 113.37 1.20 2.26 16 2 O -0.38 -11.71 10.57 -51.37 -0.54 -12.25 16 3 C 0.46 14.59 7.18 71.24 0.51 15.10 16 4 O -0.51 -18.97 15.22 21.97 0.33 -18.64 16 5 C -0.07 -1.65 5.49 29.10 0.16 -1.49 16 6 C -0.07 -1.70 4.37 -19.87 -0.09 -1.78 16 7 C -0.11 -2.34 9.69 22.27 0.22 -2.13 16 8 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 9 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 10 C -0.12 -2.87 9.13 22.27 0.20 -2.67 16 11 C -0.07 -1.82 5.04 -19.87 -0.10 -1.92 16 12 C 0.08 2.25 4.06 85.55 0.35 2.59 16 13 N -0.51 -18.66 3.74 -889.12 -3.33 -21.99 16 14 C 0.07 2.44 6.49 86.65 0.56 3.00 16 15 C -0.15 -5.97 6.10 31.77 0.19 -5.78 16 16 C 0.22 10.06 0.69 -9.99 -0.01 10.06 16 17 O -0.57 -25.86 10.23 -148.98 -1.52 -27.38 16 18 C -0.55 -30.52 8.87 25.60 0.23 -30.29 16 19 H 0.04 2.41 8.02 -2.91 -0.02 2.39 16 20 C 0.04 2.32 5.47 84.65 0.46 2.78 16 21 N -0.94 -57.81 13.96 21.45 0.30 -57.51 16 22 Si 0.93 45.61 24.28 68.60 1.67 47.28 16 23 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 25 H -0.21 -10.05 5.14 99.48 0.51 -9.54 16 26 C 0.06 2.51 4.72 86.94 0.41 2.92 16 27 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 28 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.04 1.51 8.13 -2.38 -0.02 1.49 16 30 H 0.14 2.23 8.07 -2.39 -0.02 2.22 16 31 H 0.11 2.62 6.27 -2.39 -0.01 2.60 16 32 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.13 2.64 7.87 -2.91 -0.02 2.61 16 36 H 0.05 1.41 7.65 -2.39 -0.02 1.39 16 37 H 0.08 2.34 6.42 -2.39 -0.02 2.33 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 1.92 6.71 -2.39 -0.02 1.90 16 40 H 0.06 2.46 8.02 -2.38 -0.02 2.44 16 41 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.37 14.82 9.11 -74.05 -0.67 14.14 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.05 2.49 5.04 -2.39 -0.01 2.47 16 45 H 0.05 2.08 7.71 -2.39 -0.02 2.06 16 Total: -1.00 -72.35 359.36 1.78 -70.57 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.13 Total: 31.45 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.74 Total: -11.52 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.03 Total: -79.49 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -1.73 Total: -58.27 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.28 kcal Total: -72.35 1.78 -70.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.547 kcal (2) G-P(sol) polarization free energy of solvation -72.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds