Wall clock time and date at job start Tue Mar 31 2020 12:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99908 * 2 1 4 4 O 1.20823 * 120.00254 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99916 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.01925 * 334.06209 * 5 3 2 7 7 C 1.54261 * 110.03259 * 212.61768 * 5 3 2 8 8 C 1.54898 * 104.19223 * 217.10816 * 7 5 3 9 9 C 1.54964 * 102.77763 * 37.91314 * 8 7 5 10 10 C 1.53877 * 110.03078 * 95.44665 * 5 3 2 11 11 H 1.08994 * 110.03549 * 238.62005 * 10 5 3 12 12 N 1.46908 * 110.03100 * 0.02562 * 10 5 3 13 13 C 1.46898 * 110.99626 * 195.80215 * 12 10 5 14 14 C 1.50701 * 109.46662 * 180.02562 * 13 12 10 15 15 C 1.38304 * 119.93252 * 90.00399 * 14 13 12 16 16 C 1.38098 * 120.06806 * 179.97438 * 15 14 13 17 17 C 1.38872 * 119.93131 * 0.02562 * 16 15 14 18 18 O 1.35757 * 120.06833 * 179.97438 * 17 16 15 19 19 C 1.34829 * 116.99666 * 354.57520 * 18 17 16 20 20 H 1.07999 * 120.00311 * 355.08899 * 19 18 17 21 21 C 1.38658 * 119.99835 * 175.09186 * 19 18 17 22 22 N 1.31559 * 119.99933 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99954 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47094 * 60.00222 * 23 21 19 25 25 H 1.48500 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47194 * 300.00049 * 23 21 19 27 27 C 1.38877 * 119.86792 * 359.97438 * 17 16 15 28 28 C 1.38099 * 119.92673 * 359.97438 * 27 17 16 29 29 H 1.09007 * 109.46923 * 60.00392 * 1 2 3 30 30 H 1.09000 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 300.00426 * 1 2 3 32 32 H 1.08997 * 110.48876 * 335.78232 * 7 5 3 33 33 H 1.08999 * 110.48861 * 98.43246 * 7 5 3 34 34 H 1.09001 * 110.75577 * 156.25650 * 8 7 5 35 35 H 1.08999 * 110.75404 * 279.44043 * 8 7 5 36 36 H 1.09001 * 110.52502 * 203.43257 * 9 8 7 37 37 H 1.09003 * 110.47312 * 80.76599 * 9 8 7 38 38 H 1.00891 * 111.00099 * 319.75926 * 12 10 5 39 39 H 1.09002 * 109.47081 * 60.00617 * 13 12 10 40 40 H 1.08993 * 109.47099 * 300.00116 * 13 12 10 41 41 H 1.08004 * 119.96466 * 0.24790 * 15 14 13 42 42 H 1.07998 * 120.03000 * 179.97438 * 16 15 14 43 43 H 0.97002 * 119.99507 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.04088 * 179.97438 * 27 17 16 45 45 H 1.07997 * 119.96871 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9870 0.3748 0.4489 7 6 4.0298 2.5217 0.7817 8 6 5.2605 3.0300 -0.0098 9 6 4.8480 2.7798 -1.4825 10 6 4.0861 1.4392 -1.4384 11 1 4.7589 0.6190 -1.6884 12 7 2.9589 1.4704 -2.3801 13 6 3.4179 1.2501 -3.7580 14 6 2.2368 1.2895 -4.6931 15 6 1.8455 2.4886 -5.2605 16 6 0.7639 2.5278 -6.1182 17 6 0.0687 1.3617 -6.4105 18 8 -0.9953 1.3972 -7.2529 19 6 -1.3949 2.6108 -7.6835 20 1 -0.9255 3.5029 -7.2959 21 6 -2.4086 2.7136 -8.6239 22 7 -2.9802 1.6270 -9.0964 23 14 -2.9628 4.3950 -9.2199 24 1 -1.8169 5.0995 -9.8491 25 1 -4.0522 4.2329 -10.2159 26 1 -3.4601 5.1894 -8.0680 27 6 0.4640 0.1592 -5.8393 28 6 1.5470 0.1263 -4.9831 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.2450 3.2780 0.7936 33 1 4.3154 2.2508 1.7982 34 1 5.4239 4.0925 0.1706 35 1 6.1498 2.4548 0.2476 36 1 5.7300 2.6966 -2.1175 37 1 4.1956 3.5780 -1.8365 38 1 2.2533 0.7970 -2.1219 39 1 3.9046 0.2773 -3.8276 40 1 4.1260 2.0313 -4.0343 41 1 2.3891 3.3944 -5.0359 42 1 0.4586 3.4646 -6.5606 43 1 -3.6896 1.6990 -9.7540 44 1 -0.0750 -0.7492 -6.0643 45 1 1.8548 -0.8084 -4.5382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830990346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:15 Heat of formation + Delta-G solvation = -92.879837 kcal Electronic energy + Delta-G solvation = -26713.239752 eV Core-core repulsion = 22889.147887 eV Total energy + Delta-G solvation = -3824.091865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94540 -39.08318 -38.39140 -36.81545 -36.26530 -34.28381 -32.26565 -30.36983 -30.13080 -29.67002 -27.59779 -26.92998 -25.44444 -23.84376 -22.63002 -21.94386 -20.94188 -20.33927 -19.61646 -17.96758 -17.76032 -17.07723 -16.79358 -16.66916 -15.78754 -15.38316 -14.92164 -14.62351 -14.41058 -14.27098 -14.10562 -13.62894 -13.57085 -13.35532 -13.21050 -12.83344 -12.65218 -12.29073 -12.16099 -11.87664 -11.80044 -11.60488 -11.41427 -11.35777 -11.18583 -11.14120 -10.90386 -10.79516 -10.73853 -10.66760 -10.49792 -10.42674 -10.39914 -9.34030 -8.81909 -8.44002 -8.14836 -7.17271 -6.44126 -4.02646 2.15502 2.24124 2.31130 2.60910 3.14727 3.15462 3.18255 3.98138 4.06836 4.18485 4.26432 4.59488 4.72941 4.93437 5.05166 5.05973 5.09849 5.12486 5.16540 5.18179 5.24697 5.27310 5.36212 5.38928 5.51399 5.51922 5.62621 5.72349 5.76029 5.80610 5.86515 5.91886 5.96023 6.18553 6.23782 6.34526 6.44863 6.71654 6.92325 6.98797 7.10853 7.19317 7.34414 7.43834 7.46697 7.73079 7.84890 8.01194 9.01672 9.71749 10.73899 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002825 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.127604 B = 9907.875198 C =10264.736847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.485 6.485 5 C -0.086 4.086 6 H 0.102 0.898 7 C -0.113 4.113 8 C -0.121 4.121 9 C -0.115 4.115 10 C 0.094 3.906 11 H 0.056 0.944 12 N -0.679 5.679 13 C 0.119 3.881 14 C -0.187 4.187 15 C -0.047 4.047 16 C -0.235 4.235 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.194 4.194 28 C -0.069 4.069 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.338 0.662 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.270 0.730 44 H 0.116 0.884 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.877 -1.641 18.458 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.370 6.370 5 C -0.106 4.106 6 H 0.120 0.880 7 C -0.150 4.150 8 C -0.159 4.159 9 C -0.153 4.153 10 C -0.016 4.016 11 H 0.073 0.927 12 N -0.313 5.313 13 C -0.008 4.008 14 C -0.188 4.188 15 C -0.066 4.066 16 C -0.254 4.254 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.214 4.214 28 C -0.088 4.088 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.158 0.842 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.080 0.920 44 H 0.134 0.866 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.286 -0.904 18.126 23.097 hybrid contribution -0.393 -0.131 -0.326 0.527 sum 13.893 -1.035 17.800 22.604 Atomic orbital electron populations 1.23290 0.76006 1.03713 1.02921 1.86501 1.23772 1.33760 1.84413 1.23323 0.91636 0.81537 0.72637 1.90671 1.66615 1.36149 1.43533 1.21907 0.88008 1.01960 0.98680 0.87993 1.22416 0.98979 0.95748 0.97891 1.22461 0.97015 1.01428 0.94951 1.22478 0.99346 0.97115 0.96357 1.22155 0.92465 0.98239 0.88749 0.92665 1.60861 1.11522 1.56857 1.02079 1.20653 0.94996 0.99075 0.86120 1.19099 1.01250 0.93918 1.04536 1.20570 0.95224 0.96243 0.94518 1.21170 0.99842 0.99033 1.05373 1.19404 0.87231 0.93317 0.89828 1.83985 1.38624 1.32211 1.53272 1.21286 1.19114 0.82530 1.23841 0.89127 1.25285 0.95993 0.99425 0.95779 1.70032 1.23685 1.27932 1.28199 0.85787 0.78641 0.80246 0.78816 1.19481 1.20280 1.19461 1.20144 1.01111 0.96458 1.03653 1.20474 0.94696 0.96661 0.96945 0.91212 0.88169 0.92088 0.89298 0.91028 0.90847 0.91352 0.91446 0.89667 0.84191 0.95229 0.90828 0.87495 0.85599 0.91980 0.86641 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.33 10.19 -39.26 -0.40 -4.73 16 3 C 0.47 5.89 4.74 36.01 0.17 6.06 16 4 O -0.48 -7.65 15.51 -18.75 -0.29 -7.94 16 5 C -0.09 -0.82 3.40 -90.65 -0.31 -1.13 16 6 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.11 -0.96 6.32 -25.07 -0.16 -1.12 16 8 C -0.12 -0.89 6.91 -24.69 -0.17 -1.06 16 9 C -0.11 -1.07 6.03 -25.03 -0.15 -1.22 16 10 C 0.09 0.96 3.21 -66.59 -0.21 0.75 16 11 H 0.06 0.50 7.96 -51.93 -0.41 0.09 16 12 N -0.68 -9.06 5.61 -106.81 -0.60 -9.66 16 13 C 0.12 1.63 5.64 -4.98 -0.03 1.60 16 14 C -0.19 -3.25 5.40 -104.57 -0.56 -3.81 16 15 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 16 C -0.23 -5.25 9.14 -39.40 -0.36 -5.61 16 17 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 18 O -0.18 -5.15 9.76 0.03 0.00 -5.15 16 19 C -0.39 -11.11 9.45 30.89 0.29 -10.82 16 20 H 0.09 2.39 5.28 -52.49 -0.28 2.11 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 23 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.19 -4.16 9.99 -39.40 -0.39 -4.55 16 28 C -0.07 -1.24 9.69 -39.61 -0.38 -1.63 16 29 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.09 0.96 6.92 -51.93 -0.36 0.60 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 38 H 0.34 4.81 6.45 -39.30 -0.25 4.56 16 39 H 0.03 0.37 8.03 -51.93 -0.42 -0.05 16 40 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 41 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.13 2.83 5.70 -52.49 -0.30 2.53 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 371.65 15.07 5.60 5.60 Total: -1.00 -32.56 371.65 -8.52 -41.08 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.62 Total: 7.64 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.94 Total: -17.82 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.16 Total: -34.45 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.69 Total: -17.81 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.56 -8.52 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830990346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.802 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds