Wall clock time and date at job start Tue Mar 31 2020 12:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99908 * 2 1 4 4 O 1.20823 * 120.00254 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99916 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.01925 * 334.06209 * 5 3 2 7 7 C 1.54261 * 110.03259 * 212.61768 * 5 3 2 8 8 C 1.54898 * 104.19223 * 217.10816 * 7 5 3 9 9 C 1.54964 * 102.77763 * 37.91314 * 8 7 5 10 10 C 1.53877 * 110.03078 * 95.44665 * 5 3 2 11 11 H 1.08994 * 110.03549 * 238.62005 * 10 5 3 12 12 N 1.46908 * 110.03100 * 0.02562 * 10 5 3 13 13 C 1.46898 * 110.99626 * 195.80215 * 12 10 5 14 14 C 1.50701 * 109.46662 * 180.02562 * 13 12 10 15 15 C 1.38304 * 119.93252 * 90.00399 * 14 13 12 16 16 C 1.38098 * 120.06806 * 179.97438 * 15 14 13 17 17 C 1.38872 * 119.93131 * 0.02562 * 16 15 14 18 18 O 1.35757 * 120.06833 * 179.97438 * 17 16 15 19 19 C 1.34829 * 116.99666 * 354.57520 * 18 17 16 20 20 H 1.07999 * 120.00311 * 355.08899 * 19 18 17 21 21 C 1.38658 * 119.99835 * 175.09186 * 19 18 17 22 22 N 1.31559 * 119.99933 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99954 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47094 * 60.00222 * 23 21 19 25 25 H 1.48500 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47194 * 300.00049 * 23 21 19 27 27 C 1.38877 * 119.86792 * 359.97438 * 17 16 15 28 28 C 1.38099 * 119.92673 * 359.97438 * 27 17 16 29 29 H 1.09007 * 109.46923 * 60.00392 * 1 2 3 30 30 H 1.09000 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 300.00426 * 1 2 3 32 32 H 1.08997 * 110.48876 * 335.78232 * 7 5 3 33 33 H 1.08999 * 110.48861 * 98.43246 * 7 5 3 34 34 H 1.09001 * 110.75577 * 156.25650 * 8 7 5 35 35 H 1.08999 * 110.75404 * 279.44043 * 8 7 5 36 36 H 1.09001 * 110.52502 * 203.43257 * 9 8 7 37 37 H 1.09003 * 110.47312 * 80.76599 * 9 8 7 38 38 H 1.00891 * 111.00099 * 319.75926 * 12 10 5 39 39 H 1.09002 * 109.47081 * 60.00617 * 13 12 10 40 40 H 1.08993 * 109.47099 * 300.00116 * 13 12 10 41 41 H 1.08004 * 119.96466 * 0.24790 * 15 14 13 42 42 H 1.07998 * 120.03000 * 179.97438 * 16 15 14 43 43 H 0.97002 * 119.99507 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.04088 * 179.97438 * 27 17 16 45 45 H 1.07997 * 119.96871 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9870 0.3748 0.4489 7 6 4.0298 2.5217 0.7817 8 6 5.2605 3.0300 -0.0098 9 6 4.8480 2.7798 -1.4825 10 6 4.0861 1.4392 -1.4384 11 1 4.7589 0.6190 -1.6884 12 7 2.9589 1.4704 -2.3801 13 6 3.4179 1.2501 -3.7580 14 6 2.2368 1.2895 -4.6931 15 6 1.8455 2.4886 -5.2605 16 6 0.7639 2.5278 -6.1182 17 6 0.0687 1.3617 -6.4105 18 8 -0.9953 1.3972 -7.2529 19 6 -1.3949 2.6108 -7.6835 20 1 -0.9255 3.5029 -7.2959 21 6 -2.4086 2.7136 -8.6239 22 7 -2.9802 1.6270 -9.0964 23 14 -2.9628 4.3950 -9.2199 24 1 -1.8169 5.0995 -9.8491 25 1 -4.0522 4.2329 -10.2159 26 1 -3.4601 5.1894 -8.0680 27 6 0.4640 0.1592 -5.8393 28 6 1.5470 0.1263 -4.9831 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.2450 3.2780 0.7936 33 1 4.3154 2.2508 1.7982 34 1 5.4239 4.0925 0.1706 35 1 6.1498 2.4548 0.2476 36 1 5.7300 2.6966 -2.1175 37 1 4.1956 3.5780 -1.8365 38 1 2.2533 0.7970 -2.1219 39 1 3.9046 0.2773 -3.8276 40 1 4.1260 2.0313 -4.0343 41 1 2.3891 3.3944 -5.0359 42 1 0.4586 3.4646 -6.5606 43 1 -3.6896 1.6990 -9.7540 44 1 -0.0750 -0.7492 -6.0643 45 1 1.8548 -0.8084 -4.5382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830990346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:14 Heat of formation + Delta-G solvation = -113.012241 kcal Electronic energy + Delta-G solvation = -26714.112759 eV Core-core repulsion = 22889.147887 eV Total energy + Delta-G solvation = -3824.964872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86627 -40.80074 -39.33153 -38.39574 -37.31474 -35.40560 -34.25298 -31.82895 -31.39299 -30.76269 -28.43400 -28.05085 -27.27280 -25.13826 -23.64152 -23.46407 -22.13103 -21.43103 -20.46663 -19.85866 -18.86113 -18.65731 -17.86256 -17.62436 -16.63215 -16.58625 -16.37405 -16.05940 -15.75033 -15.62577 -15.50422 -15.00607 -14.82546 -14.55192 -14.42689 -14.28972 -14.10222 -13.60818 -13.16832 -13.12723 -13.00149 -12.96553 -12.63608 -12.41322 -12.31745 -12.16125 -12.05595 -12.01293 -11.87830 -11.82462 -11.77881 -11.50274 -11.36366 -11.21836 -10.80397 -9.79876 -9.40724 -8.93109 -8.49256 -6.17319 0.58187 0.65345 1.21659 1.33087 1.43776 1.49295 1.77363 2.16418 2.74749 3.06592 3.35554 3.46834 3.49477 3.56477 3.88411 4.02105 4.05700 4.18266 4.23371 4.29577 4.31177 4.42131 4.45633 4.45974 4.47296 4.58199 4.60609 4.69714 4.71071 4.78917 4.85030 5.03602 5.07164 5.12758 5.13535 5.21877 5.24728 5.28462 5.43132 5.52535 5.55047 5.70087 5.79123 6.00668 6.06732 6.22265 6.28715 6.79379 6.95438 7.75816 8.73823 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002825 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.127604 B = 9907.875198 C =10264.736847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.465 3.535 4 O -0.526 6.526 5 C -0.084 4.084 6 H 0.132 0.868 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.093 3.907 11 H 0.081 0.919 12 N -0.697 5.697 13 C 0.124 3.876 14 C -0.161 4.161 15 C -0.051 4.051 16 C -0.245 4.245 17 C 0.114 3.886 18 O -0.231 6.231 19 C -0.415 4.415 20 H 0.098 0.902 21 C -0.021 4.021 22 N -0.920 5.920 23 Si 1.017 2.983 24 H -0.257 1.257 25 H -0.269 1.269 26 H -0.260 1.260 27 C -0.204 4.204 28 C -0.060 4.060 29 H 0.047 0.953 30 H 0.129 0.871 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.331 0.669 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.115 0.885 43 H 0.273 0.727 44 H 0.114 0.886 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.279 -1.754 20.655 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.283 6.283 3 C 0.308 3.692 4 O -0.414 6.414 5 C -0.104 4.104 6 H 0.150 0.850 7 C -0.151 4.151 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.016 4.016 11 H 0.099 0.901 12 N -0.331 5.331 13 C -0.004 4.004 14 C -0.162 4.162 15 C -0.070 4.070 16 C -0.265 4.265 17 C 0.064 3.936 18 O -0.138 6.138 19 C -0.491 4.491 20 H 0.115 0.885 21 C -0.219 4.219 22 N -0.558 5.558 23 Si 0.836 3.164 24 H -0.181 1.181 25 H -0.193 1.193 26 H -0.184 1.184 27 C -0.223 4.223 28 C -0.079 4.079 29 H 0.066 0.934 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.150 0.850 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.750 -1.033 20.369 27.038 hybrid contribution -1.203 -0.210 -0.734 1.425 sum 16.547 -1.243 19.636 25.708 Atomic orbital electron populations 1.23427 0.75564 1.05344 1.01973 1.86510 1.24304 1.33483 1.84029 1.24028 0.92881 0.81033 0.71215 1.90660 1.67769 1.37447 1.45532 1.22108 0.85678 1.03715 0.98869 0.84984 1.22427 0.98646 0.94640 0.99344 1.22457 0.97189 1.02102 0.93222 1.22484 0.99278 0.95706 0.97949 1.22327 0.91698 0.99553 0.88064 0.90150 1.60794 1.12894 1.57023 1.02356 1.20666 0.93110 1.01123 0.85501 1.19666 1.01056 0.92728 1.02776 1.20896 0.94239 0.98236 0.93587 1.21254 1.00941 0.97987 1.06294 1.19949 0.87636 0.95371 0.90639 1.83943 1.41270 1.32655 1.55920 1.21750 1.19909 0.83012 1.24477 0.88472 1.26571 0.95684 1.04047 0.95565 1.70174 1.25111 1.30713 1.29797 0.84672 0.78546 0.74635 0.78521 1.18076 1.19342 1.18400 1.20431 1.02262 0.95490 1.04127 1.20898 0.92940 0.98741 0.95289 0.93443 0.85270 0.91808 0.92276 0.88836 0.90571 0.88807 0.89796 0.92435 0.84956 0.92677 0.89430 0.85009 0.86704 0.91760 0.86742 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.37 -7.96 10.19 -51.42 -0.52 -8.49 16 3 C 0.46 10.98 4.74 71.24 0.34 11.31 16 4 O -0.53 -16.57 15.51 21.97 0.34 -16.23 16 5 C -0.08 -1.34 3.40 -10.82 -0.04 -1.37 16 6 H 0.13 1.32 8.14 -2.39 -0.02 1.31 16 7 C -0.11 -1.62 6.32 31.67 0.20 -1.42 16 8 C -0.11 -1.24 6.91 31.91 0.22 -1.02 16 9 C -0.12 -1.75 6.03 31.69 0.19 -1.56 16 10 C 0.09 1.52 3.21 45.64 0.15 1.67 16 11 H 0.08 0.98 7.96 -2.39 -0.02 0.96 16 12 N -0.70 -16.38 5.61 -491.84 -2.76 -19.14 16 13 C 0.12 2.86 5.64 85.56 0.48 3.34 16 14 C -0.16 -5.18 5.40 -19.83 -0.11 -5.29 16 15 C -0.05 -1.89 9.69 22.25 0.22 -1.67 16 16 C -0.25 -11.30 9.14 22.39 0.20 -11.09 16 17 C 0.11 5.90 6.65 22.57 0.15 6.05 16 18 O -0.23 -14.32 9.76 -22.81 -0.22 -14.54 16 19 C -0.42 -24.96 9.45 67.92 0.64 -24.32 16 20 H 0.10 5.42 5.28 -2.91 -0.02 5.41 16 21 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 22 N -0.92 -57.40 13.67 21.61 0.30 -57.10 16 23 Si 1.02 43.95 29.55 68.60 2.03 45.97 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 27 C -0.20 -8.86 9.99 22.39 0.22 -8.64 16 28 C -0.06 -2.04 9.69 22.25 0.22 -1.83 16 29 H 0.05 1.14 8.13 -2.38 -0.02 1.12 16 30 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.06 1.23 6.92 -2.39 -0.02 1.21 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.20 8.05 -2.39 -0.02 1.18 16 38 H 0.33 8.52 6.45 -89.70 -0.58 7.94 16 39 H 0.06 1.05 8.03 -2.39 -0.02 1.03 16 40 H 0.09 1.85 7.73 -2.39 -0.02 1.83 16 41 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.12 5.42 5.70 -2.91 -0.02 5.41 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 45 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -77.40 371.65 4.33 -73.08 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.42 Total: 31.25 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 4.75 Total: -34.80 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -2.46 Total: -76.24 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.41 Total: -39.26 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.40 4.33 -73.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830990346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.934 kcal (2) G-P(sol) polarization free energy of solvation -77.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds