Wall clock time and date at job start Tue Mar 31 2020 12:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.34991 * 117.00324 * 2 1 4 4 O 1.21709 * 120.00126 * 0.02562 * 3 2 1 5 5 C 1.41284 * 119.99998 * 179.97438 * 3 2 1 6 6 C 1.35758 * 120.00100 * 174.08832 * 5 3 2 7 7 C 1.41529 * 120.00041 * 350.21497 * 6 5 3 8 8 C 1.38003 * 126.10584 * 132.05688 * 7 6 5 9 9 C 1.40275 * 106.52279 * 179.97438 * 8 7 6 10 10 C 1.35177 * 107.21385 * 359.97438 * 9 8 7 11 11 C 1.50699 * 125.48131 * 180.02562 * 10 9 8 12 12 N 1.46896 * 109.47215 * 89.98344 * 11 10 9 13 13 C 1.46901 * 111.00453 * 190.00215 * 12 11 10 14 14 C 1.50697 * 109.47349 * 75.42058 * 13 12 11 15 15 H 1.08003 * 119.99399 * 5.03581 * 14 13 12 16 16 C 1.37872 * 120.00059 * 185.04206 * 14 13 12 17 17 N 1.31512 * 120.00147 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99834 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47289 * 59.99804 * 18 16 14 20 20 H 1.48506 * 109.46928 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47199 * 299.99742 * 18 16 14 22 22 C 1.46904 * 110.99957 * 66.04606 * 12 11 10 23 23 C 1.53001 * 109.47282 * 190.68978 * 22 12 11 24 24 C 1.53002 * 117.49787 * 242.74508 * 23 22 12 25 25 C 1.52994 * 117.50211 * 174.08483 * 23 22 12 26 26 O 1.34006 * 109.04024 * 0.02562 * 10 9 8 27 27 H 1.08993 * 109.47684 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46649 * 300.00541 * 1 2 3 29 29 H 1.08998 * 109.46496 * 59.99362 * 1 2 3 30 30 H 1.08007 * 120.00166 * 354.09553 * 5 3 2 31 31 H 1.08002 * 119.99861 * 170.21511 * 6 5 3 32 32 H 1.07998 * 126.73878 * 359.97438 * 8 7 6 33 33 H 1.07998 * 126.39323 * 180.02562 * 9 8 7 34 34 H 1.09006 * 109.47269 * 209.98285 * 11 10 9 35 35 H 1.08999 * 109.47178 * 329.98225 * 11 10 9 36 36 H 1.08998 * 109.47551 * 195.42697 * 13 12 11 37 37 H 1.09005 * 109.46715 * 315.42366 * 13 12 11 38 38 H 0.96998 * 120.00039 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47232 * 310.68680 * 22 12 11 40 40 H 1.08995 * 109.46923 * 70.68873 * 22 12 11 41 41 H 1.09001 * 115.55232 * 28.40782 * 23 22 12 42 42 H 1.08992 * 117.50190 * 359.97438 * 24 23 22 43 43 H 1.09001 * 117.49799 * 145.01755 * 24 23 22 44 44 H 1.09007 * 117.49767 * 214.98121 * 25 23 22 45 45 H 1.09004 * 117.49806 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0420 1.2027 0.0000 4 8 1.3792 2.2235 0.0005 5 6 3.4529 1.2766 0.0005 6 6 4.0697 2.4799 -0.1205 7 6 3.3165 3.6309 -0.4536 8 6 3.3749 4.8535 0.1837 9 6 2.4648 5.6918 -0.4771 10 6 1.9001 4.9667 -1.4684 11 6 0.8604 5.4693 -2.4365 12 7 1.5246 6.0369 -3.6174 13 6 0.5635 6.7472 -4.4717 14 6 0.2132 8.0704 -3.8413 15 1 0.7198 8.3915 -2.9432 16 6 -0.7541 8.8708 -4.4111 17 7 -1.3706 8.4798 -5.5049 18 14 -1.1878 10.5114 -3.6300 19 1 0.0185 11.3767 -3.5939 20 1 -2.2488 11.1751 -4.4295 21 1 -1.6775 10.2868 -2.2462 22 6 2.2328 4.9960 -4.3743 23 6 3.1233 5.6511 -5.4320 24 6 2.8151 5.3497 -6.9001 25 6 4.0523 4.7397 -6.2364 26 8 2.4135 3.7290 -1.4516 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 4.0408 0.3757 0.0972 31 1 5.1352 2.5588 0.0373 32 1 3.9989 5.1139 1.0259 33 1 2.2551 6.7241 -0.2390 34 1 0.2192 4.6426 -2.7427 35 1 0.2566 6.2382 -1.9546 36 1 1.0064 6.9180 -5.4528 37 1 -0.3393 6.1461 -4.5803 38 1 -2.0508 9.0432 -5.9060 39 1 2.8491 4.4080 -3.6942 40 1 1.5077 4.3449 -4.8625 41 1 3.4852 6.6501 -5.1887 42 1 1.9784 4.6843 -7.1123 43 1 2.9747 6.1501 -7.6225 44 1 5.0254 5.1392 -6.5225 45 1 4.0294 3.6733 -6.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848886410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:21 Heat of formation + Delta-G solvation = -13.202296 kcal Electronic energy + Delta-G solvation = -27052.526297 eV Core-core repulsion = 23231.889509 eV Total energy + Delta-G solvation = -3820.636788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23148 -40.48522 -37.80868 -36.86151 -35.50722 -34.22309 -32.71136 -32.44103 -29.94714 -28.19051 -27.62328 -26.32540 -24.35327 -23.16646 -21.98381 -21.49178 -21.31780 -20.50618 -19.57295 -19.45854 -18.09504 -16.96881 -16.48945 -16.41153 -15.88251 -15.63756 -15.20856 -14.70809 -14.48162 -14.25532 -13.91966 -13.76232 -13.40620 -13.36855 -13.19283 -12.61747 -12.45842 -12.39256 -12.03472 -12.01222 -11.83317 -11.43663 -11.18070 -11.14395 -10.80370 -10.78861 -10.66801 -10.58496 -10.55454 -10.13483 -9.98064 -9.84838 -9.49703 -9.36077 -9.21650 -8.41246 -7.74092 -7.32616 -6.01368 -4.03162 0.38876 2.11160 2.84242 2.85197 3.04995 3.34371 3.38532 3.38897 3.41610 4.22636 4.43407 4.71741 4.80445 4.87435 5.03864 5.10216 5.11977 5.21058 5.28472 5.30229 5.33736 5.36068 5.41406 5.59367 5.68947 5.76505 5.88786 5.91841 5.96862 6.11737 6.16426 6.22776 6.25306 6.28756 6.34097 6.36633 6.47495 6.53040 6.78152 6.86468 7.21825 7.33539 7.53675 7.75825 7.81872 8.06293 8.13893 8.51384 9.04950 9.61233 11.08798 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011866 B = 0.003669 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.072725 B = 7629.620517 C = 8502.117664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.485 3.515 4 O -0.485 6.485 5 C -0.208 4.208 6 C 0.045 3.955 7 C -0.035 4.035 8 C -0.159 4.159 9 C -0.208 4.208 10 C 0.050 3.950 11 C 0.137 3.863 12 N -0.527 5.527 13 C 0.192 3.808 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.085 3.915 23 C -0.128 4.128 24 C -0.178 4.178 25 C -0.189 4.189 26 O -0.147 6.147 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.038 0.962 35 H 0.116 0.884 36 H 0.039 0.961 37 H -0.004 1.004 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.024 0.976 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.320 -15.372 9.270 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.332 3.668 4 O -0.373 6.373 5 C -0.227 4.227 6 C 0.027 3.973 7 C -0.084 4.084 8 C -0.178 4.178 9 C -0.228 4.228 10 C -0.003 4.003 11 C 0.009 3.991 12 N -0.253 5.253 13 C 0.068 3.932 14 C -0.547 4.547 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.043 4.043 23 C -0.147 4.147 24 C -0.215 4.215 25 C -0.226 4.226 26 O -0.042 6.042 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.056 0.944 35 H 0.134 0.866 36 H 0.057 0.943 37 H 0.014 0.986 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.131 0.869 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.185 -14.920 9.087 20.222 hybrid contribution -1.079 0.428 0.176 1.174 sum 9.106 -14.492 9.263 19.462 Atomic orbital electron populations 1.22837 0.77111 1.03290 1.02547 1.86197 1.23207 1.33293 1.84912 1.19999 0.90400 0.81658 0.74767 1.90997 1.67015 1.35102 1.44235 1.21449 0.91659 0.99603 1.09992 1.20774 0.98803 0.88584 0.89149 1.19369 0.97034 0.96012 0.96032 1.22101 1.02260 0.91708 1.01762 1.21391 1.01434 1.01241 0.98693 1.22951 0.97414 0.81606 0.98336 1.20605 0.90194 0.98028 0.90283 1.62179 1.31143 1.24358 1.07578 1.19804 0.88243 0.92785 0.92372 1.21146 1.19716 1.02547 1.11312 0.91815 1.24972 0.96080 0.98322 0.95077 1.69947 1.25965 1.37911 1.19938 0.86594 0.78012 0.83812 0.79188 1.20186 1.21432 1.20257 1.21633 0.95503 0.92853 0.94347 1.22218 1.00532 1.00247 0.91661 1.22985 0.98794 1.03233 0.96532 1.22943 0.94817 0.98837 1.06012 1.84110 1.43801 1.31841 1.44447 0.88359 0.92301 0.92087 0.83496 0.82285 0.83610 0.83253 0.94420 0.86638 0.94269 0.98589 0.92902 0.91802 0.95810 0.86926 0.89270 0.89075 0.89294 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.45 101.05 1.06 1.42 16 2 O -0.36 -4.33 10.46 -41.29 -0.43 -4.76 16 3 C 0.49 6.58 7.52 31.89 0.24 6.82 16 4 O -0.48 -8.25 12.61 -27.36 -0.35 -8.60 16 5 C -0.21 -2.14 9.99 -39.31 -0.39 -2.53 16 6 C 0.05 0.47 9.95 -39.22 -0.39 0.08 16 7 C -0.03 -0.51 4.95 -38.41 -0.19 -0.70 16 8 C -0.16 -2.30 10.90 -38.90 -0.42 -2.72 16 9 C -0.21 -3.52 10.76 -39.91 -0.43 -3.95 16 10 C 0.05 0.92 5.89 -35.40 -0.21 0.71 16 11 C 0.14 2.77 5.32 -4.98 -0.03 2.74 16 12 N -0.53 -11.42 4.41 -237.52 -1.05 -12.47 16 13 C 0.19 4.91 4.61 -4.98 -0.02 4.89 16 14 C -0.51 -13.99 8.54 -34.44 -0.29 -14.28 16 15 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 18 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.09 1.63 5.11 -3.82 -0.02 1.61 16 23 C -0.13 -2.28 4.69 -90.62 -0.42 -2.71 16 24 C -0.18 -2.91 9.99 -26.69 -0.27 -3.18 16 25 C -0.19 -2.73 10.25 -26.70 -0.27 -3.01 16 26 O -0.15 -2.61 7.65 -19.10 -0.15 -2.76 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.15 2.41 8.06 -52.49 -0.42 1.98 16 34 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.12 2.43 7.42 -51.93 -0.39 2.05 16 36 H 0.04 1.06 6.72 -51.93 -0.35 0.71 16 37 H 0.00 -0.10 8.00 -51.93 -0.42 -0.52 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.06 1.19 6.31 -51.93 -0.33 0.86 16 40 H 0.02 0.47 7.85 -51.93 -0.41 0.06 16 41 H 0.11 2.17 8.14 -51.93 -0.42 1.75 16 42 H 0.09 1.46 8.03 -51.93 -0.42 1.05 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 45 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -32.46 381.42 -9.59 -42.05 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.92 Total: 3.27 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.16 Total: -13.31 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.31 Total: -38.10 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.92 Total: -16.12 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.46 -9.59 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848886410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.852 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds