Wall clock time and date at job start Tue Mar 31 2020 12:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.34991 * 117.00324 * 2 1 4 4 O 1.21709 * 120.00126 * 0.02562 * 3 2 1 5 5 C 1.41284 * 119.99998 * 179.97438 * 3 2 1 6 6 C 1.35758 * 120.00100 * 174.08832 * 5 3 2 7 7 C 1.41529 * 120.00041 * 350.21497 * 6 5 3 8 8 C 1.38003 * 126.10584 * 132.05688 * 7 6 5 9 9 C 1.40275 * 106.52279 * 179.97438 * 8 7 6 10 10 C 1.35177 * 107.21385 * 359.97438 * 9 8 7 11 11 C 1.50699 * 125.48131 * 180.02562 * 10 9 8 12 12 N 1.46896 * 109.47215 * 89.98344 * 11 10 9 13 13 C 1.46901 * 111.00453 * 190.00215 * 12 11 10 14 14 C 1.50697 * 109.47349 * 75.42058 * 13 12 11 15 15 H 1.08003 * 119.99399 * 5.03581 * 14 13 12 16 16 C 1.37872 * 120.00059 * 185.04206 * 14 13 12 17 17 N 1.31512 * 120.00147 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99834 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47289 * 59.99804 * 18 16 14 20 20 H 1.48506 * 109.46928 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47199 * 299.99742 * 18 16 14 22 22 C 1.46904 * 110.99957 * 66.04606 * 12 11 10 23 23 C 1.53001 * 109.47282 * 190.68978 * 22 12 11 24 24 C 1.53002 * 117.49787 * 242.74508 * 23 22 12 25 25 C 1.52994 * 117.50211 * 174.08483 * 23 22 12 26 26 O 1.34006 * 109.04024 * 0.02562 * 10 9 8 27 27 H 1.08993 * 109.47684 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46649 * 300.00541 * 1 2 3 29 29 H 1.08998 * 109.46496 * 59.99362 * 1 2 3 30 30 H 1.08007 * 120.00166 * 354.09553 * 5 3 2 31 31 H 1.08002 * 119.99861 * 170.21511 * 6 5 3 32 32 H 1.07998 * 126.73878 * 359.97438 * 8 7 6 33 33 H 1.07998 * 126.39323 * 180.02562 * 9 8 7 34 34 H 1.09006 * 109.47269 * 209.98285 * 11 10 9 35 35 H 1.08999 * 109.47178 * 329.98225 * 11 10 9 36 36 H 1.08998 * 109.47551 * 195.42697 * 13 12 11 37 37 H 1.09005 * 109.46715 * 315.42366 * 13 12 11 38 38 H 0.96998 * 120.00039 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47232 * 310.68680 * 22 12 11 40 40 H 1.08995 * 109.46923 * 70.68873 * 22 12 11 41 41 H 1.09001 * 115.55232 * 28.40782 * 23 22 12 42 42 H 1.08992 * 117.50190 * 359.97438 * 24 23 22 43 43 H 1.09001 * 117.49799 * 145.01755 * 24 23 22 44 44 H 1.09007 * 117.49767 * 214.98121 * 25 23 22 45 45 H 1.09004 * 117.49806 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0420 1.2027 0.0000 4 8 1.3792 2.2235 0.0005 5 6 3.4529 1.2766 0.0005 6 6 4.0697 2.4799 -0.1205 7 6 3.3165 3.6309 -0.4536 8 6 3.3749 4.8535 0.1837 9 6 2.4648 5.6918 -0.4771 10 6 1.9001 4.9667 -1.4684 11 6 0.8604 5.4693 -2.4365 12 7 1.5246 6.0369 -3.6174 13 6 0.5635 6.7472 -4.4717 14 6 0.2132 8.0704 -3.8413 15 1 0.7198 8.3915 -2.9432 16 6 -0.7541 8.8708 -4.4111 17 7 -1.3706 8.4798 -5.5049 18 14 -1.1878 10.5114 -3.6300 19 1 0.0185 11.3767 -3.5939 20 1 -2.2488 11.1751 -4.4295 21 1 -1.6775 10.2868 -2.2462 22 6 2.2328 4.9960 -4.3743 23 6 3.1233 5.6511 -5.4320 24 6 2.8151 5.3497 -6.9001 25 6 4.0523 4.7397 -6.2364 26 8 2.4135 3.7290 -1.4516 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 4.0408 0.3757 0.0972 31 1 5.1352 2.5588 0.0373 32 1 3.9989 5.1139 1.0259 33 1 2.2551 6.7241 -0.2390 34 1 0.2192 4.6426 -2.7427 35 1 0.2566 6.2382 -1.9546 36 1 1.0064 6.9180 -5.4528 37 1 -0.3393 6.1461 -4.5803 38 1 -2.0508 9.0432 -5.9060 39 1 2.8491 4.4080 -3.6942 40 1 1.5077 4.3449 -4.8625 41 1 3.4852 6.6501 -5.1887 42 1 1.9784 4.6843 -7.1123 43 1 2.9747 6.1501 -7.6225 44 1 5.0254 5.1392 -6.5225 45 1 4.0294 3.6733 -6.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848886410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:21 Heat of formation + Delta-G solvation = -31.481843 kcal Electronic energy + Delta-G solvation = -27053.318957 eV Core-core repulsion = 23231.889509 eV Total energy + Delta-G solvation = -3821.429448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.46235 -41.50822 -39.35904 -37.86951 -37.04496 -35.24688 -34.65420 -33.83355 -31.28390 -29.58850 -29.18010 -27.58875 -25.95978 -24.51652 -23.23305 -22.97518 -22.69962 -21.72857 -21.06570 -20.61046 -19.09657 -18.54992 -18.04315 -17.46865 -17.31870 -16.99362 -16.63725 -16.42662 -15.73194 -15.46528 -15.29120 -15.14652 -14.83613 -14.40178 -14.27071 -14.13008 -13.89185 -13.73039 -13.49527 -13.45655 -13.16183 -12.95443 -12.85900 -12.61243 -12.50057 -12.38364 -12.25574 -11.93718 -11.75842 -11.65225 -11.43410 -11.16505 -11.04716 -10.79552 -10.65785 -10.54895 -9.20794 -8.89074 -8.18272 -6.28429 -0.52892 0.91456 1.41467 1.44269 1.52002 1.66997 1.90278 2.01717 2.27168 2.41135 2.89291 3.14036 3.25675 3.68948 3.86661 3.90498 4.00816 4.03158 4.13023 4.16332 4.26172 4.27675 4.33371 4.44644 4.48218 4.57632 4.62462 4.64423 4.74509 4.76580 4.80464 4.84271 4.99370 5.00555 5.11903 5.18696 5.21209 5.25247 5.26609 5.37666 5.42741 5.65717 5.68387 6.05704 6.19791 6.27051 6.53593 6.75965 6.86303 7.40887 8.91897 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011866 B = 0.003669 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.072725 B = 7629.620517 C = 8502.117664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.474 3.526 4 O -0.530 6.530 5 C -0.199 4.199 6 C 0.044 3.956 7 C -0.028 4.028 8 C -0.168 4.168 9 C -0.210 4.210 10 C 0.013 3.987 11 C 0.145 3.855 12 N -0.528 5.528 13 C 0.211 3.789 14 C -0.523 4.523 15 H 0.062 0.938 16 C 0.006 3.994 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.093 3.907 23 C -0.156 4.156 24 C -0.187 4.187 25 C -0.149 4.149 26 O -0.164 6.164 27 H 0.134 0.866 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.191 0.809 31 H 0.214 0.786 32 H 0.182 0.818 33 H 0.150 0.850 34 H 0.023 0.977 35 H 0.098 0.902 36 H 0.021 0.979 37 H -0.038 1.038 38 H 0.264 0.736 39 H 0.072 0.928 40 H 0.012 0.988 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.093 -16.641 10.782 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.273 6.273 3 C 0.323 3.677 4 O -0.422 6.422 5 C -0.218 4.218 6 C 0.026 3.974 7 C -0.077 4.077 8 C -0.187 4.187 9 C -0.229 4.229 10 C -0.039 4.039 11 C 0.017 3.983 12 N -0.253 5.253 13 C 0.086 3.914 14 C -0.561 4.561 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.035 4.035 23 C -0.175 4.175 24 C -0.224 4.224 25 C -0.186 4.186 26 O -0.060 6.060 27 H 0.152 0.848 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.230 0.770 32 H 0.199 0.801 33 H 0.167 0.833 34 H 0.041 0.959 35 H 0.116 0.884 36 H 0.039 0.961 37 H -0.020 1.020 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.030 0.970 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.132 0.868 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.975 -16.217 10.611 23.322 hybrid contribution -1.935 0.642 -0.240 2.053 sum 11.040 -15.575 10.371 21.726 Atomic orbital electron populations 1.23033 0.76288 1.05334 1.01573 1.86203 1.24099 1.32628 1.84414 1.20816 0.91888 0.81361 0.73649 1.91000 1.68234 1.36479 1.46440 1.21865 0.89983 1.01269 1.08641 1.21424 1.00770 0.86678 0.88536 1.20303 0.95349 0.97693 0.94368 1.22439 1.02358 0.91154 1.02709 1.21598 1.01484 1.01497 0.98361 1.22396 0.99248 0.82778 0.99512 1.20318 0.90910 0.96893 0.90139 1.62130 1.29898 1.25680 1.07587 1.19413 0.87463 0.92351 0.92214 1.21425 1.19978 1.03370 1.11317 0.91937 1.25845 0.95823 1.02104 0.95470 1.70078 1.26526 1.39413 1.21323 0.85499 0.77955 0.79092 0.78459 1.19291 1.20910 1.19370 1.21596 0.95163 0.92155 0.94570 1.22114 1.02757 1.00493 0.92118 1.23023 1.00212 1.03718 0.95488 1.23038 0.94711 0.99007 1.01868 1.84064 1.44742 1.31280 1.45933 0.84781 0.92655 0.93751 0.79177 0.76951 0.80057 0.83268 0.95856 0.88424 0.96103 1.01999 0.92748 0.91000 0.96970 0.88698 0.89899 0.88742 0.86839 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.45 113.37 1.18 1.80 16 2 O -0.36 -8.07 10.46 -59.09 -0.62 -8.69 16 3 C 0.47 12.18 7.52 68.57 0.52 12.70 16 4 O -0.53 -18.15 12.61 26.74 0.34 -17.81 16 5 C -0.20 -3.35 9.99 22.44 0.22 -3.13 16 6 C 0.04 0.72 9.95 22.51 0.22 0.95 16 7 C -0.03 -0.76 4.95 23.03 0.11 -0.64 16 8 C -0.17 -4.55 10.90 22.71 0.25 -4.31 16 9 C -0.21 -7.18 10.76 22.06 0.24 -6.94 16 10 C 0.01 0.49 5.89 24.98 0.15 0.63 16 11 C 0.15 6.34 5.32 85.56 0.45 6.80 16 12 N -0.53 -24.31 4.41 -905.37 -4.00 -28.31 16 13 C 0.21 11.51 4.61 85.56 0.39 11.90 16 14 C -0.52 -29.98 8.54 25.60 0.22 -29.76 16 15 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 16 C 0.01 0.33 5.46 84.65 0.46 0.79 16 17 N -0.93 -56.60 13.29 21.44 0.28 -56.32 16 18 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.09 3.73 5.11 86.30 0.44 4.17 16 23 C -0.16 -5.67 4.69 -10.79 -0.05 -5.72 16 24 C -0.19 -6.16 9.99 30.62 0.31 -5.85 16 25 C -0.15 -4.04 10.25 30.62 0.31 -3.73 16 26 O -0.16 -5.89 7.65 16.72 0.13 -5.76 16 27 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.10 8.13 -2.39 -0.02 1.09 16 29 H 0.04 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 32 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.15 4.94 8.06 -2.91 -0.02 4.91 16 34 H 0.02 1.05 8.12 -2.38 -0.02 1.03 16 35 H 0.10 4.49 7.42 -2.39 -0.02 4.47 16 36 H 0.02 1.20 6.72 -2.39 -0.02 1.18 16 37 H -0.04 -2.27 8.00 -2.38 -0.02 -2.29 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.07 2.74 6.31 -2.39 -0.02 2.73 16 40 H 0.01 0.51 7.85 -2.39 -0.02 0.49 16 41 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.08 2.80 8.03 -2.39 -0.02 2.78 16 43 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 45 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -75.14 381.42 4.57 -70.57 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.97 Total: 19.82 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 5.43 Total: -20.33 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -3.71 Total: -84.63 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.15 Total: -32.25 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.14 4.57 -70.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848886410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.092 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds