Wall clock time and date at job start Tue Mar 31 2020 12:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35000 * 117.00226 * 2 1 4 4 O 1.21710 * 119.99275 * 0.02562 * 3 2 1 5 5 C 1.41290 * 120.00123 * 180.27229 * 3 2 1 6 6 C 1.35760 * 119.99895 * 184.66038 * 5 3 2 7 7 C 1.41528 * 119.99614 * 8.66262 * 6 5 3 8 8 C 1.38001 * 126.10279 * 220.67116 * 7 6 5 9 9 C 1.40282 * 106.52416 * 179.89069 * 8 7 6 10 10 C 1.35175 * 107.21228 * 0.37493 * 9 8 7 11 11 C 1.50698 * 125.48263 * 179.80374 * 10 9 8 12 12 N 1.46496 * 109.47324 * 89.98445 * 11 10 9 13 13 C 1.36934 * 120.00717 * 94.51803 * 12 11 10 14 14 H 1.08001 * 120.00322 * 220.34449 * 13 12 11 15 15 C 1.38815 * 119.99660 * 40.33453 * 13 12 11 16 16 N 1.31618 * 120.00218 * 12.19516 * 15 13 12 17 17 Si 1.86807 * 119.99708 * 192.19523 * 15 13 12 18 18 H 1.48505 * 109.46816 * 90.00133 * 17 15 13 19 19 H 1.48502 * 109.46866 * 210.00049 * 17 15 13 20 20 H 1.48500 * 109.47225 * 329.99923 * 17 15 13 21 21 C 1.46505 * 119.99580 * 274.51570 * 12 11 10 22 22 C 1.54273 * 110.03223 * 237.90566 * 21 12 11 23 23 C 1.54964 * 104.15914 * 217.13911 * 22 21 12 24 24 C 1.54881 * 102.77916 * 37.88980 * 23 22 21 25 25 C 1.53880 * 110.03109 * 120.69084 * 21 12 11 26 26 O 1.34009 * 109.04088 * 359.76365 * 10 9 8 27 27 H 1.08999 * 109.46596 * 59.99852 * 1 2 3 28 28 H 1.08998 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47182 * 300.00146 * 1 2 3 30 30 H 1.08004 * 120.00017 * 4.66441 * 5 3 2 31 31 H 1.07992 * 119.99651 * 188.65943 * 6 5 3 32 32 H 1.08000 * 126.73794 * 359.97438 * 8 7 6 33 33 H 1.08003 * 126.39815 * 180.13696 * 9 8 7 34 34 H 1.08997 * 109.47030 * 209.98035 * 11 10 9 35 35 H 1.08996 * 109.47356 * 329.98094 * 11 10 9 36 36 H 0.96996 * 119.99717 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.02074 * 359.29736 * 21 12 11 38 38 H 1.08999 * 110.48653 * 335.78864 * 22 21 12 39 39 H 1.08998 * 110.48491 * 98.42854 * 22 21 12 40 40 H 1.08999 * 110.71854 * 279.57403 * 23 22 21 41 41 H 1.09001 * 110.92058 * 156.29692 * 23 22 21 42 42 H 1.09003 * 110.48547 * 203.40832 * 24 23 22 43 43 H 1.08999 * 110.60396 * 80.81920 * 24 23 22 44 44 H 1.08996 * 110.03176 * 238.56592 * 25 21 12 45 45 H 1.08998 * 110.02997 * 359.95240 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0420 1.2028 0.0000 4 8 1.3790 2.2235 0.0005 5 6 3.4529 1.2768 -0.0058 6 6 4.0699 2.4823 0.0897 7 6 3.3136 3.6432 0.3784 8 6 3.4802 4.8862 -0.1975 9 6 2.5189 5.7269 0.3831 10 6 1.8252 4.9852 1.2752 11 6 0.6939 5.4848 2.1363 12 7 -0.5756 5.3039 1.4279 13 6 -1.3273 4.1803 1.6458 14 1 -1.8200 3.6913 0.8184 15 6 -1.4560 3.6696 2.9302 16 7 -1.0652 4.3836 3.9645 17 14 -2.1838 1.9689 3.1905 18 1 -1.0977 0.9565 3.1642 19 1 -2.8731 1.9215 4.5050 20 1 -3.1590 1.6770 2.1094 21 6 -1.0410 6.3253 0.4864 22 6 -2.4287 6.8458 0.9147 23 6 -3.1781 7.0719 -0.4228 24 6 -2.7007 5.8798 -1.2887 25 6 -1.2136 5.7116 -0.9142 26 8 2.3049 3.7339 1.2702 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0406 0.3742 -0.0863 31 1 5.1376 2.5553 -0.0546 32 1 4.2069 5.1580 -0.9487 33 1 2.3645 6.7727 0.1617 34 1 0.6722 4.9226 3.0699 35 1 0.8417 6.5428 2.3526 36 1 -1.1547 4.0265 4.8619 37 1 -0.3288 7.1494 0.4477 38 1 -2.9453 6.1011 1.5201 39 1 -2.3321 7.7835 1.4620 40 1 -2.8840 8.0194 -0.8742 41 1 -4.2574 7.0344 -0.2753 42 1 -2.8031 6.1130 -2.3485 43 1 -3.2607 4.9778 -1.0417 44 1 -0.5858 6.2385 -1.6326 45 1 -0.9503 4.6541 -0.8934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848888705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:31 Heat of formation + Delta-G solvation = -28.598147 kcal Electronic energy + Delta-G solvation = -28764.231202 eV Core-core repulsion = 24942.926800 eV Total energy + Delta-G solvation = -3821.304402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68002 -39.90499 -37.72186 -36.31727 -34.48481 -33.66868 -32.20531 -31.13215 -29.31279 -27.81976 -27.69915 -26.54801 -25.60040 -23.44963 -22.10706 -21.01744 -20.17663 -19.88670 -19.09148 -19.00567 -17.58130 -16.60914 -16.30219 -15.91664 -15.53917 -15.18842 -14.73154 -14.52781 -14.16069 -13.94797 -13.70146 -13.29570 -12.97394 -12.86321 -12.72249 -12.55516 -12.26526 -12.01735 -11.93157 -11.55406 -11.13116 -11.09338 -10.91659 -10.62494 -10.42406 -10.34170 -10.25278 -10.20559 -10.08005 -10.02076 -9.88932 -9.85359 -9.70102 -9.49585 -9.06013 -8.51462 -7.25754 -6.58487 -5.82642 -3.42545 0.79830 2.70918 3.27397 3.34435 3.37234 3.39791 3.40099 3.53744 3.91991 4.45508 5.13152 5.24575 5.31704 5.37108 5.47144 5.48439 5.52198 5.55108 5.61694 5.65824 5.76408 5.82477 5.94855 6.08834 6.15262 6.19725 6.29517 6.32032 6.39479 6.46163 6.55041 6.57270 6.60651 6.63782 6.72269 6.86267 6.88627 6.97377 7.00664 7.19614 7.28629 7.36591 7.52709 7.84352 8.09653 8.33903 8.54506 9.14424 9.74924 10.32001 11.18776 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.006585 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.995026 B = 4250.784665 C = 5261.475020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.470 3.530 4 O -0.457 6.457 5 C -0.215 4.215 6 C 0.037 3.963 7 C -0.056 4.056 8 C -0.158 4.158 9 C -0.260 4.260 10 C 0.061 3.939 11 C 0.198 3.802 12 N -0.556 5.556 13 C -0.229 4.229 14 H 0.060 0.940 15 C 0.014 3.986 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.276 1.276 21 C 0.173 3.827 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.133 4.133 26 O -0.126 6.126 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.256 0.744 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 -1.377 -7.764 10.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.315 3.685 4 O -0.343 6.343 5 C -0.234 4.234 6 C 0.019 3.981 7 C -0.106 4.106 8 C -0.178 4.178 9 C -0.280 4.280 10 C 0.003 3.997 11 C 0.070 3.930 12 N -0.274 5.274 13 C -0.359 4.359 14 H 0.077 0.923 15 C -0.185 4.185 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.201 1.201 21 C 0.066 3.934 22 C -0.167 4.167 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.172 4.172 26 O -0.018 6.018 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.135 0.865 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.197 -1.360 -7.380 9.732 hybrid contribution -0.349 -0.878 -0.197 0.965 sum 5.848 -2.238 -7.577 9.830 Atomic orbital electron populations 1.22823 0.77323 1.02664 1.02983 1.86134 1.23011 1.33703 1.85401 1.20001 0.90365 0.81977 0.76143 1.91132 1.66561 1.34390 1.42220 1.21313 0.91840 0.99207 1.11041 1.20645 0.98368 0.89008 0.90122 1.19423 0.94625 0.95178 1.01356 1.22023 1.01717 0.91918 1.02109 1.21304 1.02100 1.00894 1.03672 1.25305 0.94533 0.80850 0.99008 1.19930 0.79164 0.97931 0.95930 1.43853 1.15846 1.19698 1.47968 1.18876 1.24224 1.01740 0.91054 0.92254 1.25235 0.99123 0.98406 0.95766 1.69798 1.49788 1.35977 0.97928 0.86419 0.78898 0.84905 0.77303 1.21179 1.21643 1.20132 1.21077 0.93579 0.89919 0.88843 1.22753 0.97553 1.00422 0.95926 1.22442 0.99009 0.97421 0.97231 1.22246 0.97265 0.98317 0.97643 1.22576 0.94710 1.02288 0.97652 1.84342 1.38236 1.30900 1.48321 0.92415 0.88955 0.91759 0.84245 0.82980 0.84476 0.84694 0.86501 0.92198 0.93382 0.93301 0.89570 0.93456 0.92850 0.92809 0.93492 0.92070 0.93895 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.45 101.05 1.06 1.67 16 2 O -0.36 -6.49 10.46 -41.32 -0.43 -6.92 16 3 C 0.47 8.97 7.52 31.89 0.24 9.21 16 4 O -0.46 -10.51 12.13 -27.71 -0.34 -10.84 16 5 C -0.21 -3.20 9.99 -39.31 -0.39 -3.59 16 6 C 0.04 0.53 9.95 -39.22 -0.39 0.14 16 7 C -0.06 -1.04 5.31 -38.42 -0.20 -1.25 16 8 C -0.16 -2.76 10.90 -38.90 -0.42 -3.18 16 9 C -0.26 -5.00 10.76 -39.90 -0.43 -5.43 16 10 C 0.06 1.35 6.88 -35.40 -0.24 1.11 16 11 C 0.20 4.65 5.69 -5.20 -0.03 4.62 16 12 N -0.56 -13.38 2.34 -165.75 -0.39 -13.77 16 13 C -0.23 -6.05 7.66 -15.06 -0.12 -6.16 16 14 H 0.06 1.63 7.14 -52.49 -0.38 1.26 16 15 C 0.01 0.38 5.12 -17.43 -0.09 0.29 16 16 N -0.89 -24.74 11.17 55.49 0.62 -24.12 16 17 Si 0.89 21.62 29.45 -169.99 -5.01 16.62 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.17 3.60 3.42 -66.80 -0.23 3.37 16 22 C -0.13 -2.52 6.42 -25.03 -0.16 -2.68 16 23 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 24 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 25 C -0.13 -2.62 6.19 -25.61 -0.16 -2.78 16 26 O -0.13 -2.87 7.82 -20.18 -0.16 -3.03 16 27 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.26 8.01 -51.93 -0.42 0.85 16 30 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.14 2.34 8.06 -52.48 -0.42 1.92 16 34 H 0.12 3.12 5.43 -51.93 -0.28 2.84 16 35 H 0.06 1.30 8.02 -51.93 -0.42 0.88 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.05 0.97 7.88 -51.93 -0.41 0.56 16 38 H 0.09 1.98 7.03 -51.93 -0.37 1.61 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.67 6.99 -51.93 -0.36 1.31 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -30.63 370.87 -8.86 -39.49 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.83 Total: 6.05 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.91 Total: -9.06 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.23 Total: -37.89 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.93 Total: -20.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.01 Total: 16.62 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.63 -8.86 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848888705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.891 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds