Wall clock time and date at job start Tue Mar 31 2020 12:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35000 * 117.00226 * 2 1 4 4 O 1.21710 * 119.99275 * 0.02562 * 3 2 1 5 5 C 1.41290 * 120.00123 * 180.27229 * 3 2 1 6 6 C 1.35760 * 119.99895 * 184.66038 * 5 3 2 7 7 C 1.41528 * 119.99614 * 8.66262 * 6 5 3 8 8 C 1.38001 * 126.10279 * 220.67116 * 7 6 5 9 9 C 1.40282 * 106.52416 * 179.89069 * 8 7 6 10 10 C 1.35175 * 107.21228 * 0.37493 * 9 8 7 11 11 C 1.50698 * 125.48263 * 179.80374 * 10 9 8 12 12 N 1.46496 * 109.47324 * 89.98445 * 11 10 9 13 13 C 1.36934 * 120.00717 * 94.51803 * 12 11 10 14 14 H 1.08001 * 120.00322 * 220.34449 * 13 12 11 15 15 C 1.38815 * 119.99660 * 40.33453 * 13 12 11 16 16 N 1.31618 * 120.00218 * 12.19516 * 15 13 12 17 17 Si 1.86807 * 119.99708 * 192.19523 * 15 13 12 18 18 H 1.48505 * 109.46816 * 90.00133 * 17 15 13 19 19 H 1.48502 * 109.46866 * 210.00049 * 17 15 13 20 20 H 1.48500 * 109.47225 * 329.99923 * 17 15 13 21 21 C 1.46505 * 119.99580 * 274.51570 * 12 11 10 22 22 C 1.54273 * 110.03223 * 237.90566 * 21 12 11 23 23 C 1.54964 * 104.15914 * 217.13911 * 22 21 12 24 24 C 1.54881 * 102.77916 * 37.88980 * 23 22 21 25 25 C 1.53880 * 110.03109 * 120.69084 * 21 12 11 26 26 O 1.34009 * 109.04088 * 359.76365 * 10 9 8 27 27 H 1.08999 * 109.46596 * 59.99852 * 1 2 3 28 28 H 1.08998 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47182 * 300.00146 * 1 2 3 30 30 H 1.08004 * 120.00017 * 4.66441 * 5 3 2 31 31 H 1.07992 * 119.99651 * 188.65943 * 6 5 3 32 32 H 1.08000 * 126.73794 * 359.97438 * 8 7 6 33 33 H 1.08003 * 126.39815 * 180.13696 * 9 8 7 34 34 H 1.08997 * 109.47030 * 209.98035 * 11 10 9 35 35 H 1.08996 * 109.47356 * 329.98094 * 11 10 9 36 36 H 0.96996 * 119.99717 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.02074 * 359.29736 * 21 12 11 38 38 H 1.08999 * 110.48653 * 335.78864 * 22 21 12 39 39 H 1.08998 * 110.48491 * 98.42854 * 22 21 12 40 40 H 1.08999 * 110.71854 * 279.57403 * 23 22 21 41 41 H 1.09001 * 110.92058 * 156.29692 * 23 22 21 42 42 H 1.09003 * 110.48547 * 203.40832 * 24 23 22 43 43 H 1.08999 * 110.60396 * 80.81920 * 24 23 22 44 44 H 1.08996 * 110.03176 * 238.56592 * 25 21 12 45 45 H 1.08998 * 110.02997 * 359.95240 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0420 1.2028 0.0000 4 8 1.3790 2.2235 0.0005 5 6 3.4529 1.2768 -0.0058 6 6 4.0699 2.4823 0.0897 7 6 3.3136 3.6432 0.3784 8 6 3.4802 4.8862 -0.1975 9 6 2.5189 5.7269 0.3831 10 6 1.8252 4.9852 1.2752 11 6 0.6939 5.4848 2.1363 12 7 -0.5756 5.3039 1.4279 13 6 -1.3273 4.1803 1.6458 14 1 -1.8200 3.6913 0.8184 15 6 -1.4560 3.6696 2.9302 16 7 -1.0652 4.3836 3.9645 17 14 -2.1838 1.9689 3.1905 18 1 -1.0977 0.9565 3.1642 19 1 -2.8731 1.9215 4.5050 20 1 -3.1590 1.6770 2.1094 21 6 -1.0410 6.3253 0.4864 22 6 -2.4287 6.8458 0.9147 23 6 -3.1781 7.0719 -0.4228 24 6 -2.7007 5.8798 -1.2887 25 6 -1.2136 5.7116 -0.9142 26 8 2.3049 3.7339 1.2702 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0406 0.3742 -0.0863 31 1 5.1376 2.5553 -0.0546 32 1 4.2069 5.1580 -0.9487 33 1 2.3645 6.7727 0.1617 34 1 0.6722 4.9226 3.0699 35 1 0.8417 6.5428 2.3526 36 1 -1.1547 4.0265 4.8619 37 1 -0.3288 7.1494 0.4477 38 1 -2.9453 6.1011 1.5201 39 1 -2.3321 7.7835 1.4620 40 1 -2.8840 8.0194 -0.8742 41 1 -4.2574 7.0344 -0.2753 42 1 -2.8031 6.1130 -2.3485 43 1 -3.2607 4.9778 -1.0417 44 1 -0.5858 6.2385 -1.6326 45 1 -0.9503 4.6541 -0.8934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848888705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:30 Heat of formation + Delta-G solvation = -44.062159 kcal Electronic energy + Delta-G solvation = -28764.901772 eV Core-core repulsion = 24942.926800 eV Total energy + Delta-G solvation = -3821.974972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.19860 -41.37793 -39.36647 -37.77317 -36.21610 -35.04650 -33.80436 -32.98155 -30.85960 -29.37152 -29.15052 -28.21573 -27.27417 -25.02355 -23.75941 -22.49637 -21.69267 -21.33757 -20.81762 -20.44865 -18.98766 -18.38900 -17.88233 -17.40223 -17.28328 -16.76978 -16.36993 -16.06620 -15.95357 -15.26143 -15.14104 -14.89540 -14.71092 -14.37509 -14.12725 -14.06090 -13.85357 -13.51915 -13.28743 -13.09519 -13.03769 -12.84988 -12.74237 -12.26006 -12.22982 -11.97489 -11.83147 -11.80045 -11.74984 -11.69578 -11.43614 -11.36985 -11.19919 -11.00600 -10.55430 -10.50462 -8.73768 -8.52306 -7.84783 -5.48814 -0.46795 1.21390 1.33794 1.35544 1.42352 1.80893 2.02980 2.17068 2.44436 2.53267 3.27935 3.65517 3.88849 3.96768 3.98187 4.07382 4.19785 4.25119 4.26076 4.27890 4.29918 4.49106 4.59079 4.64983 4.67642 4.74323 4.84701 4.90284 4.92100 4.93011 4.94642 5.13301 5.17014 5.22038 5.22825 5.28949 5.39428 5.47467 5.50329 5.58261 5.62740 5.67861 5.77604 5.87840 6.46951 6.61577 6.88653 7.14958 7.81962 8.33967 9.12178 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.006585 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.995026 B = 4250.784665 C = 5261.475020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.457 3.543 4 O -0.506 6.506 5 C -0.216 4.216 6 C 0.047 3.953 7 C -0.065 4.065 8 C -0.157 4.157 9 C -0.248 4.248 10 C 0.019 3.981 11 C 0.204 3.796 12 N -0.570 5.570 13 C -0.218 4.218 14 H 0.039 0.961 15 C -0.031 4.031 16 N -0.916 5.916 17 Si 0.938 3.062 18 H -0.292 1.292 19 H -0.288 1.288 20 H -0.268 1.268 21 C 0.165 3.835 22 C -0.126 4.126 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.124 4.124 26 O -0.162 6.162 27 H 0.054 0.946 28 H 0.135 0.865 29 H 0.026 0.974 30 H 0.185 0.815 31 H 0.214 0.786 32 H 0.181 0.819 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.250 0.750 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.060 0.940 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.565 -1.283 -10.325 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.396 6.396 5 C -0.235 4.235 6 C 0.029 3.971 7 C -0.114 4.114 8 C -0.176 4.176 9 C -0.268 4.268 10 C -0.038 4.038 11 C 0.077 3.923 12 N -0.288 5.288 13 C -0.349 4.349 14 H 0.056 0.944 15 C -0.228 4.228 16 N -0.562 5.562 17 Si 0.767 3.233 18 H -0.220 1.220 19 H -0.214 1.214 20 H -0.193 1.193 21 C 0.059 3.941 22 C -0.165 4.165 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.163 4.163 26 O -0.056 6.056 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.045 0.955 30 H 0.203 0.797 31 H 0.231 0.769 32 H 0.198 0.802 33 H 0.171 0.829 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.168 -1.273 -9.962 12.946 hybrid contribution -0.820 -0.965 0.506 1.364 sum 7.348 -2.238 -9.456 12.183 Atomic orbital electron populations 1.22918 0.77088 1.04796 1.00969 1.86151 1.23297 1.33311 1.85018 1.20998 0.92176 0.81524 0.74825 1.91139 1.67911 1.35830 1.44699 1.21726 0.89649 1.01373 1.10732 1.21409 1.00616 0.86938 0.88123 1.20391 0.93457 0.97463 1.00107 1.22451 1.01844 0.90842 1.02454 1.21564 1.01404 1.01671 1.02179 1.24836 0.96243 0.81690 1.01013 1.19570 0.80081 0.97786 0.94873 1.43949 1.16490 1.19811 1.48543 1.18725 1.23670 1.02272 0.90210 0.94364 1.25720 1.00386 1.00858 0.95804 1.69922 1.51599 1.36907 0.97722 0.85732 0.78217 0.82080 0.77284 1.21990 1.21414 1.19317 1.21286 0.94356 0.89642 0.88771 1.22658 0.97018 0.99410 0.97409 1.22391 0.99406 0.98161 0.94764 1.22220 0.95103 0.98090 0.99642 1.22435 0.96828 0.99603 0.97437 1.84274 1.39852 1.31267 1.50174 0.92712 0.84687 0.95505 0.79737 0.76948 0.80207 0.82922 0.90247 0.91318 0.94030 0.92090 0.93575 0.92665 0.90002 0.91444 0.90439 0.93950 0.92113 0.95090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.45 113.37 1.18 2.43 16 2 O -0.36 -12.65 10.46 -59.19 -0.62 -13.27 16 3 C 0.46 17.29 7.52 68.57 0.52 17.81 16 4 O -0.51 -24.03 12.13 27.07 0.33 -23.70 16 5 C -0.22 -5.79 9.99 22.45 0.22 -5.57 16 6 C 0.05 1.17 9.95 22.51 0.22 1.39 16 7 C -0.06 -2.31 5.31 23.02 0.12 -2.18 16 8 C -0.16 -5.04 10.90 22.71 0.25 -4.80 16 9 C -0.25 -9.31 10.76 22.06 0.24 -9.08 16 10 C 0.02 0.84 6.88 24.98 0.17 1.02 16 11 C 0.20 10.13 5.69 85.63 0.49 10.62 16 12 N -0.57 -28.84 2.34 -678.31 -1.59 -30.43 16 13 C -0.22 -12.25 7.66 84.03 0.64 -11.61 16 14 H 0.04 2.28 7.14 -2.91 -0.02 2.26 16 15 C -0.03 -1.79 5.12 84.86 0.43 -1.36 16 16 N -0.92 -54.04 11.17 21.65 0.24 -53.80 16 17 Si 0.94 46.88 29.45 68.60 2.02 48.90 16 18 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 19 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 21 C 0.17 7.02 3.42 45.72 0.16 7.18 16 22 C -0.13 -5.01 6.42 31.70 0.20 -4.81 16 23 C -0.11 -3.42 6.91 31.91 0.22 -3.20 16 24 C -0.11 -3.80 6.83 31.67 0.22 -3.59 16 25 C -0.12 -4.90 6.19 31.32 0.19 -4.70 16 26 O -0.16 -7.57 7.82 17.64 0.14 -7.43 16 27 H 0.05 1.86 8.13 -2.39 -0.02 1.84 16 28 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 29 H 0.03 1.10 8.01 -2.39 -0.02 1.08 16 30 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.21 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.15 5.02 8.06 -2.91 -0.02 4.99 16 34 H 0.08 4.56 5.43 -2.39 -0.01 4.55 16 35 H 0.07 3.13 8.02 -2.39 -0.02 3.11 16 36 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.06 2.40 7.88 -2.39 -0.02 2.38 16 38 H 0.05 2.20 7.03 -2.39 -0.02 2.19 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.03 1.47 6.99 -2.39 -0.02 1.45 16 Total: -1.00 -74.30 370.87 6.98 -67.32 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.98 Total: 22.85 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 5.48 Total: -10.45 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -1.35 Total: -84.22 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.15 Total: -44.40 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.02 Total: 48.90 kcal Total: -74.30 6.98 -67.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848888705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.259 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds