Wall clock time and date at job start Tue Mar 31 2020 12:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99385 * 2 1 4 4 C 1.53002 * 109.46797 * 179.97438 * 3 2 1 5 5 S 1.81406 * 109.46976 * 180.02562 * 4 3 2 6 6 O 1.42100 * 108.57581 * 65.51455 * 5 4 3 7 7 O 1.42105 * 108.57753 * 294.49071 * 5 4 3 8 8 C 1.81401 * 101.92125 * 180.02562 * 5 4 3 9 9 C 1.52999 * 109.46951 * 179.97438 * 8 5 4 10 10 C 1.52999 * 109.46926 * 179.97438 * 9 8 5 11 11 N 1.46899 * 109.47036 * 179.97438 * 10 9 8 12 12 C 1.46847 * 110.99862 * 66.05037 * 11 10 9 13 13 C 1.53044 * 109.51335 * 174.15436 * 12 11 10 14 14 C 1.53119 * 109.27589 * 59.18419 * 13 12 11 15 15 C 1.53120 * 109.16202 * 302.34077 * 14 13 12 16 16 H 1.08996 * 109.50004 * 297.72216 * 15 14 13 17 17 C 1.50697 * 109.50290 * 177.63586 * 15 14 13 18 18 H 1.07997 * 120.00495 * 240.00286 * 17 15 14 19 19 C 1.37880 * 119.99487 * 60.00267 * 17 15 14 20 20 N 1.31518 * 120.00428 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99610 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46846 * 90.00299 * 21 19 17 23 23 H 1.48500 * 109.47333 * 210.00213 * 21 19 17 24 24 H 1.48499 * 109.47310 * 330.00257 * 21 19 17 25 25 C 1.46847 * 110.99299 * 301.84195 * 11 10 9 26 26 H 1.09009 * 109.46799 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47499 * 299.99348 * 1 2 3 28 28 H 1.08995 * 109.47737 * 60.00053 * 1 2 3 29 29 H 1.09004 * 109.47220 * 60.00428 * 3 2 1 30 30 H 1.08997 * 109.47351 * 300.00525 * 3 2 1 31 31 H 1.08996 * 109.47033 * 60.00534 * 4 3 2 32 32 H 1.08996 * 109.47196 * 300.00337 * 4 3 2 33 33 H 1.08999 * 109.46742 * 60.00002 * 8 5 4 34 34 H 1.08996 * 109.46808 * 300.00469 * 8 5 4 35 35 H 1.08999 * 109.47343 * 60.00434 * 9 8 5 36 36 H 1.08997 * 109.47101 * 300.00194 * 9 8 5 37 37 H 1.09004 * 109.47161 * 60.00228 * 10 9 8 38 38 H 1.08996 * 109.47358 * 300.00580 * 10 9 8 39 39 H 1.09002 * 109.46448 * 54.14158 * 12 11 10 40 40 H 1.08994 * 109.45958 * 294.16523 * 12 11 10 41 41 H 1.09000 * 109.49745 * 179.12223 * 13 12 11 42 42 H 1.08999 * 109.49729 * 299.20033 * 13 12 11 43 43 H 1.08993 * 109.52284 * 62.25342 * 14 13 12 44 44 H 1.09003 * 109.51690 * 182.37761 * 14 13 12 45 45 H 0.97001 * 119.99568 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46836 * 65.83946 * 25 11 10 47 47 H 1.08995 * 109.45748 * 305.85482 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 16 4.2731 2.8421 0.0014 6 8 3.9466 3.4823 1.2273 7 8 3.9476 3.4831 -1.2244 8 6 6.0470 2.4626 0.0013 9 6 6.8474 3.7665 0.0013 10 6 8.3435 3.4465 0.0018 11 7 9.1120 4.6984 0.0012 12 6 8.9128 5.4389 1.2535 13 6 9.8367 6.6587 1.2788 14 6 9.5227 7.5556 0.0782 15 6 9.6908 6.7467 -1.2110 16 1 10.7264 6.4196 -1.3029 17 6 9.3274 7.6056 -2.3948 18 1 8.5227 7.3084 -3.0509 19 6 10.0224 8.7709 -2.6402 20 7 11.0027 9.1326 -1.8415 21 14 9.5725 9.8352 -4.1079 22 1 8.5437 10.8268 -3.7034 23 1 10.7823 10.5468 -4.5928 24 1 9.0337 8.9781 -5.1943 25 6 8.7711 5.5244 -1.1641 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6884 1.8465 -0.8899 31 1 3.8574 0.6439 -0.8891 32 1 3.8567 0.6440 0.8908 33 1 6.2947 1.8846 -0.8889 34 1 6.2947 1.8837 0.8910 35 1 6.5997 4.3450 0.8913 36 1 6.5995 4.3450 -0.8886 37 1 8.5916 2.8678 -0.8880 38 1 8.5910 2.8682 0.8919 39 1 9.1434 4.7909 2.0992 40 1 7.8756 5.7674 1.3201 41 1 9.6774 7.2167 2.2015 42 1 10.8747 6.3300 1.2267 43 1 8.4966 7.9158 0.1511 44 1 10.2068 8.4041 0.0687 45 1 11.4918 9.9522 -2.0144 46 1 7.7346 5.8526 -1.0860 47 1 8.8990 4.9386 -2.0743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852320187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:21 Heat of formation + Delta-G solvation = -124.474226 kcal Electronic energy + Delta-G solvation = -25302.909621 eV Core-core repulsion = 21612.891672 eV Total energy + Delta-G solvation = -3690.017949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.65074 -38.44326 -37.22823 -36.28180 -34.95903 -32.86065 -32.43469 -31.11076 -29.85755 -27.09715 -26.30346 -24.93222 -24.11944 -22.92193 -21.51971 -20.86309 -19.14980 -18.33912 -17.65792 -17.00383 -16.64855 -16.21374 -16.18730 -16.06020 -15.28215 -15.15231 -14.85910 -14.36896 -14.13823 -14.05554 -13.95670 -13.09464 -12.78237 -12.74083 -12.56465 -12.32607 -12.27218 -12.19935 -12.15635 -11.97071 -11.91337 -11.86456 -11.44260 -11.23997 -11.03443 -10.89229 -10.76949 -10.63151 -10.44282 -10.25188 -10.03601 -9.79935 -9.44916 -9.03126 -8.68222 -8.27605 -7.67042 -5.94552 -4.00544 -0.39865 2.42945 2.99999 3.33868 3.40428 3.43928 3.56745 3.68616 4.14784 4.21465 4.26000 4.46664 4.53918 4.67485 4.69946 4.84747 4.85596 5.02375 5.08837 5.15722 5.19973 5.20301 5.35428 5.37309 5.58969 5.71758 5.79908 5.88352 6.07031 6.17175 6.29971 6.42125 6.52141 6.52856 6.72600 6.77568 6.98004 7.23337 7.41144 7.63805 7.76731 7.81570 8.10434 8.19971 8.50740 9.03526 9.63771 11.11381 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.002626 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.101452 B =10661.937858 C =11588.285236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.073 3.927 4 C -0.623 4.623 5 S 2.416 3.584 6 O -0.933 6.933 7 O -0.929 6.929 8 C -0.593 4.593 9 C -0.156 4.156 10 C 0.066 3.934 11 N -0.535 5.535 12 C 0.056 3.944 13 C -0.118 4.118 14 C -0.112 4.112 15 C 0.054 3.946 16 H 0.034 0.966 17 C -0.514 4.514 18 H 0.054 0.946 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.060 3.940 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.030 0.970 44 H 0.091 0.909 45 H 0.259 0.741 46 H 0.025 0.975 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.022 -18.599 6.635 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.303 6.303 3 C -0.004 4.004 4 C -0.750 4.750 5 S 2.598 3.402 6 O -0.931 6.931 7 O -0.927 6.927 8 C -0.724 4.724 9 C -0.197 4.197 10 C -0.064 4.064 11 N -0.257 5.257 12 C -0.071 4.071 13 C -0.156 4.156 14 C -0.150 4.150 15 C 0.035 3.965 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.067 4.067 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.043 0.957 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.720 -17.934 6.620 24.128 hybrid contribution -0.968 0.099 -0.705 1.202 sum -15.688 -17.836 5.914 24.479 Atomic orbital electron populations 1.22846 0.80332 1.03257 1.00591 1.87907 1.20252 1.26633 1.95541 1.22058 0.89725 0.86520 1.02124 1.30573 1.05709 1.26078 1.12627 1.08238 0.79075 0.77257 0.75661 1.93601 1.82637 1.71235 1.45587 1.93624 1.82557 1.71078 1.45398 1.30165 1.21969 1.08555 1.11740 1.22178 0.99130 0.93712 1.04647 1.22188 0.87861 0.93972 1.02411 1.62257 1.54388 1.05415 1.03682 1.22109 0.98005 0.95768 0.91256 1.21683 0.99220 0.95425 0.99253 1.21667 1.00220 0.99767 0.93357 1.18672 0.95081 0.89519 0.93208 0.94777 1.21154 1.17275 1.06439 1.10441 0.92783 1.24937 0.94931 0.97622 0.96388 1.69894 1.21573 1.23919 1.37352 0.86630 0.77816 0.80614 0.83127 1.20772 1.21291 1.19943 1.22409 0.98290 0.95596 0.90373 0.89141 0.93568 0.93536 0.91474 0.91398 0.84150 0.84239 0.84625 0.84828 0.90085 0.89360 0.90620 0.91088 0.92320 0.95432 0.93479 0.92089 0.95108 0.89048 0.93092 0.95670 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.45 10.70 -35.23 -0.38 -3.83 16 3 C 0.07 0.61 5.95 37.16 0.22 0.83 16 4 C -0.62 -4.11 6.18 37.16 0.23 -3.88 16 5 S 2.42 23.08 4.72 -107.50 -0.51 22.57 16 6 O -0.93 -12.09 18.10 -57.83 -1.05 -13.14 16 7 O -0.93 -12.59 18.10 -57.83 -1.05 -13.63 16 8 C -0.59 -4.71 5.81 37.16 0.22 -4.49 16 9 C -0.16 -1.97 4.52 -26.73 -0.12 -2.09 16 10 C 0.07 0.89 5.36 -3.83 -0.02 0.87 16 11 N -0.53 -9.55 4.86 -234.67 -1.14 -10.69 16 12 C 0.06 0.98 5.05 -3.83 -0.02 0.96 16 13 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 14 C -0.11 -2.67 5.02 -26.61 -0.13 -2.80 16 15 C 0.05 1.35 2.26 -91.69 -0.21 1.15 16 16 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 17 C -0.51 -14.18 8.57 -34.44 -0.30 -14.48 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.46 11.35 55.43 0.63 -24.84 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.06 1.26 4.06 -3.83 -0.02 1.24 16 26 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.14 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.06 6.68 -51.93 -0.35 0.72 16 36 H 0.09 1.26 6.50 -51.93 -0.34 0.93 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 39 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 40 H 0.03 0.48 6.76 -51.93 -0.35 0.13 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.03 0.53 6.61 -51.93 -0.34 0.19 16 47 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -35.15 380.84 -10.48 -45.62 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -8.42 Total: -2.02 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 0.71 Total: -22.26 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.51 Total: -35.53 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -2.47 Total: -30.60 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 23.08 SS G_CDS: -0.51 Total: 22.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.15 -10.48 -45.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.850 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds