Wall clock time and date at job start Tue Mar 31 2020 12:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99385 * 2 1 4 4 C 1.53002 * 109.46797 * 179.97438 * 3 2 1 5 5 S 1.81406 * 109.46976 * 180.02562 * 4 3 2 6 6 O 1.42100 * 108.57581 * 65.51455 * 5 4 3 7 7 O 1.42105 * 108.57753 * 294.49071 * 5 4 3 8 8 C 1.81401 * 101.92125 * 180.02562 * 5 4 3 9 9 C 1.52999 * 109.46951 * 179.97438 * 8 5 4 10 10 C 1.52999 * 109.46926 * 179.97438 * 9 8 5 11 11 N 1.46899 * 109.47036 * 179.97438 * 10 9 8 12 12 C 1.46847 * 110.99862 * 66.05037 * 11 10 9 13 13 C 1.53044 * 109.51335 * 174.15436 * 12 11 10 14 14 C 1.53119 * 109.27589 * 59.18419 * 13 12 11 15 15 C 1.53120 * 109.16202 * 302.34077 * 14 13 12 16 16 H 1.08996 * 109.50004 * 297.72216 * 15 14 13 17 17 C 1.50697 * 109.50290 * 177.63586 * 15 14 13 18 18 H 1.07997 * 120.00495 * 240.00286 * 17 15 14 19 19 C 1.37880 * 119.99487 * 60.00267 * 17 15 14 20 20 N 1.31518 * 120.00428 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99610 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46846 * 90.00299 * 21 19 17 23 23 H 1.48500 * 109.47333 * 210.00213 * 21 19 17 24 24 H 1.48499 * 109.47310 * 330.00257 * 21 19 17 25 25 C 1.46847 * 110.99299 * 301.84195 * 11 10 9 26 26 H 1.09009 * 109.46799 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47499 * 299.99348 * 1 2 3 28 28 H 1.08995 * 109.47737 * 60.00053 * 1 2 3 29 29 H 1.09004 * 109.47220 * 60.00428 * 3 2 1 30 30 H 1.08997 * 109.47351 * 300.00525 * 3 2 1 31 31 H 1.08996 * 109.47033 * 60.00534 * 4 3 2 32 32 H 1.08996 * 109.47196 * 300.00337 * 4 3 2 33 33 H 1.08999 * 109.46742 * 60.00002 * 8 5 4 34 34 H 1.08996 * 109.46808 * 300.00469 * 8 5 4 35 35 H 1.08999 * 109.47343 * 60.00434 * 9 8 5 36 36 H 1.08997 * 109.47101 * 300.00194 * 9 8 5 37 37 H 1.09004 * 109.47161 * 60.00228 * 10 9 8 38 38 H 1.08996 * 109.47358 * 300.00580 * 10 9 8 39 39 H 1.09002 * 109.46448 * 54.14158 * 12 11 10 40 40 H 1.08994 * 109.45958 * 294.16523 * 12 11 10 41 41 H 1.09000 * 109.49745 * 179.12223 * 13 12 11 42 42 H 1.08999 * 109.49729 * 299.20033 * 13 12 11 43 43 H 1.08993 * 109.52284 * 62.25342 * 14 13 12 44 44 H 1.09003 * 109.51690 * 182.37761 * 14 13 12 45 45 H 0.97001 * 119.99568 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46836 * 65.83946 * 25 11 10 47 47 H 1.08995 * 109.45748 * 305.85482 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 16 4.2731 2.8421 0.0014 6 8 3.9466 3.4823 1.2273 7 8 3.9476 3.4831 -1.2244 8 6 6.0470 2.4626 0.0013 9 6 6.8474 3.7665 0.0013 10 6 8.3435 3.4465 0.0018 11 7 9.1120 4.6984 0.0012 12 6 8.9128 5.4389 1.2535 13 6 9.8367 6.6587 1.2788 14 6 9.5227 7.5556 0.0782 15 6 9.6908 6.7467 -1.2110 16 1 10.7264 6.4196 -1.3029 17 6 9.3274 7.6056 -2.3948 18 1 8.5227 7.3084 -3.0509 19 6 10.0224 8.7709 -2.6402 20 7 11.0027 9.1326 -1.8415 21 14 9.5725 9.8352 -4.1079 22 1 8.5437 10.8268 -3.7034 23 1 10.7823 10.5468 -4.5928 24 1 9.0337 8.9781 -5.1943 25 6 8.7711 5.5244 -1.1641 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6884 1.8465 -0.8899 31 1 3.8574 0.6439 -0.8891 32 1 3.8567 0.6440 0.8908 33 1 6.2947 1.8846 -0.8889 34 1 6.2947 1.8837 0.8910 35 1 6.5997 4.3450 0.8913 36 1 6.5995 4.3450 -0.8886 37 1 8.5916 2.8678 -0.8880 38 1 8.5910 2.8682 0.8919 39 1 9.1434 4.7909 2.0992 40 1 7.8756 5.7674 1.3201 41 1 9.6774 7.2167 2.2015 42 1 10.8747 6.3300 1.2267 43 1 8.4966 7.9158 0.1511 44 1 10.2068 8.4041 0.0687 45 1 11.4918 9.9522 -2.0144 46 1 7.7346 5.8526 -1.0860 47 1 8.8990 4.9386 -2.0743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852320187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:20 Heat of formation + Delta-G solvation = -151.740857 kcal Electronic energy + Delta-G solvation = -25304.091991 eV Core-core repulsion = 21612.891672 eV Total energy + Delta-G solvation = -3691.200319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.11034 -39.01116 -38.08428 -37.13877 -36.40794 -34.55136 -32.98976 -32.52913 -31.67736 -27.69041 -27.33091 -26.91983 -25.02534 -23.91913 -23.18759 -22.26016 -19.99261 -19.89306 -18.53874 -18.22212 -17.63196 -17.28997 -16.90988 -16.76672 -16.69199 -16.09969 -15.99755 -15.79128 -15.53052 -15.21739 -14.77965 -14.59313 -14.34787 -14.07414 -13.54585 -13.38560 -13.24359 -13.19291 -13.12144 -12.99089 -12.86545 -12.76313 -12.72290 -12.68134 -12.49294 -12.45587 -11.96651 -11.92317 -11.72127 -11.55281 -11.46611 -11.34461 -10.84791 -10.80952 -10.65497 -10.37313 -9.07521 -8.08067 -6.21875 -1.10425 1.40227 1.40861 1.51174 1.77657 2.38185 2.42584 2.94937 3.03132 3.14599 3.18636 3.58580 3.69547 3.70986 3.82158 4.10345 4.14798 4.22800 4.28788 4.31479 4.39474 4.44079 4.45182 4.53206 4.60198 4.66058 4.70356 4.72546 4.80012 4.81152 4.90675 4.93303 5.06178 5.09546 5.19473 5.23787 5.41393 5.53773 5.63954 5.97265 5.98729 6.12818 6.21482 6.39792 6.46427 6.90945 7.45768 8.96382 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.002626 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.101452 B =10661.937858 C =11588.285236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.400 6.400 3 C 0.057 3.943 4 C -0.600 4.600 5 S 2.413 3.587 6 O -0.978 6.978 7 O -0.983 6.983 8 C -0.577 4.577 9 C -0.163 4.163 10 C 0.064 3.936 11 N -0.546 5.546 12 C 0.059 3.941 13 C -0.113 4.113 14 C -0.106 4.106 15 C 0.050 3.950 16 H -0.001 1.001 17 C -0.537 4.537 18 H 0.049 0.951 19 C 0.013 3.987 20 N -0.914 5.914 21 Si 0.952 3.048 22 H -0.278 1.278 23 H -0.281 1.281 24 H -0.269 1.269 25 C 0.075 3.925 26 H 0.106 0.894 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.027 0.973 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.018 0.982 44 H 0.057 0.943 45 H 0.260 0.740 46 H 0.018 0.982 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.626 -21.402 7.330 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.319 6.319 3 C -0.021 4.021 4 C -0.730 4.730 5 S 2.601 3.399 6 O -0.975 6.975 7 O -0.980 6.980 8 C -0.710 4.710 9 C -0.204 4.204 10 C -0.065 4.065 11 N -0.269 5.269 12 C -0.069 4.069 13 C -0.150 4.150 14 C -0.145 4.145 15 C 0.031 3.969 16 H 0.017 0.983 17 C -0.575 4.575 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.554 5.554 21 Si 0.778 3.222 22 H -0.204 1.204 23 H -0.207 1.207 24 H -0.193 1.193 25 C -0.053 4.053 26 H 0.124 0.876 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.183 0.817 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.193 0.807 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.036 0.964 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.341 -20.714 7.319 26.795 hybrid contribution -0.793 0.894 -0.902 1.497 sum -16.135 -19.821 6.417 26.351 Atomic orbital electron populations 1.23069 0.79131 1.04530 1.01238 1.87863 1.21704 1.26714 1.95657 1.22237 0.90943 0.86631 1.02296 1.30304 1.04305 1.23006 1.15382 1.07923 0.80000 0.78276 0.73738 1.93544 1.83727 1.73543 1.46659 1.93560 1.83800 1.73633 1.46992 1.30024 1.18608 1.06880 1.15478 1.22107 0.99430 0.95805 1.03039 1.22357 0.87637 0.91852 1.04648 1.62168 1.55952 1.06286 1.02528 1.22122 0.97177 0.95356 0.92225 1.21602 0.99448 0.96067 0.97926 1.21479 0.98410 0.99443 0.95124 1.18608 0.93889 0.91254 0.93110 0.98313 1.21537 1.17241 1.07272 1.11471 0.93240 1.25714 0.94915 0.98886 0.99017 1.70033 1.22335 1.24276 1.38718 0.85652 0.77670 0.78898 0.80008 1.20350 1.20678 1.19314 1.22037 0.96577 0.94485 0.92170 0.87611 0.92862 0.93037 0.91337 0.91631 0.81676 0.81334 0.81453 0.80685 0.90981 0.92097 0.89440 0.87781 0.88612 0.95520 0.91391 0.92847 0.96327 0.92405 0.93076 0.96406 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 11.01 113.37 1.25 1.42 16 2 O -0.40 -6.36 10.70 -148.98 -1.59 -7.96 16 3 C 0.06 0.84 5.95 71.98 0.43 1.27 16 4 C -0.60 -6.03 6.18 71.98 0.44 -5.58 16 5 S 2.41 42.79 4.72 -56.49 -0.27 42.52 16 6 O -0.98 -24.91 18.10 -127.37 -2.31 -27.21 16 7 O -0.98 -26.96 18.10 -127.37 -2.30 -29.26 16 8 C -0.58 -7.00 5.81 71.98 0.42 -6.58 16 9 C -0.16 -3.78 4.52 30.59 0.14 -3.64 16 10 C 0.06 1.51 5.36 86.30 0.46 1.97 16 11 N -0.55 -18.71 4.86 -896.35 -4.35 -23.07 16 12 C 0.06 1.92 5.05 86.33 0.44 2.36 16 13 C -0.11 -4.36 6.09 30.65 0.19 -4.18 16 14 C -0.11 -5.24 5.02 30.67 0.15 -5.09 16 15 C 0.05 2.61 2.26 -11.49 -0.03 2.59 16 16 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 17 C -0.54 -30.62 8.57 25.60 0.22 -30.40 16 18 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 19 C 0.01 0.77 5.30 84.65 0.45 1.21 16 20 N -0.91 -54.12 11.35 21.45 0.24 -53.88 16 21 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.07 3.18 4.06 86.33 0.35 3.53 16 26 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.17 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.17 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.18 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.78 6.68 -2.39 -0.02 1.77 16 36 H 0.06 1.74 6.50 -2.39 -0.02 1.72 16 37 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.10 1.83 8.06 -2.39 -0.02 1.81 16 39 H 0.10 2.47 8.06 -2.39 -0.02 2.45 16 40 H 0.03 0.89 6.76 -2.39 -0.02 0.87 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 3.22 6.15 -2.39 -0.01 3.20 16 45 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 46 H 0.02 0.78 6.61 -2.38 -0.02 0.76 16 47 H 0.06 2.48 8.12 -2.39 -0.02 2.47 16 Total: -1.00 -80.66 380.84 -2.73 -83.38 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.92 Total: 9.63 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 4.91 Total: -41.11 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -4.11 Total: -76.95 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -6.20 Total: -64.43 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 42.79 SS G_CDS: -0.27 Total: 42.52 kcal Total: -80.66 -2.73 -83.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852320187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.358 kcal (2) G-P(sol) polarization free energy of solvation -80.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds