Wall clock time and date at job start Tue Mar 31 2020 12:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.41596 * 113.99645 * 2 1 4 4 C 1.46501 * 120.00463 * 275.06241 * 3 2 1 5 5 C 1.53005 * 109.47176 * 262.01811 * 4 3 2 6 6 C 1.53172 * 109.54372 * 295.31397 * 5 4 3 7 7 C 1.53093 * 109.16401 * 183.15558 * 6 5 4 8 8 O 1.42902 * 109.41638 * 57.60256 * 7 6 5 9 9 C 1.42902 * 114.09798 * 298.84422 * 8 7 6 10 10 C 1.53093 * 109.41524 * 61.16010 * 9 8 7 11 11 C 1.34785 * 119.99919 * 95.07056 * 3 2 1 12 12 O 1.21609 * 119.99953 * 184.23597 * 11 3 2 13 13 C 1.47428 * 119.99878 * 4.23363 * 11 3 2 14 14 C 1.39232 * 120.28255 * 33.10250 * 13 11 3 15 15 C 1.38222 * 120.08942 * 180.27856 * 14 13 11 16 16 C 1.38825 * 120.67920 * 359.69893 * 15 14 13 17 17 C 1.37598 * 120.56843 * 0.02562 * 16 15 14 18 18 C 1.40707 * 119.88360 * 0.02562 * 17 16 15 19 19 C 1.40889 * 120.32920 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99580 * 214.92781 * 19 18 17 21 21 C 1.40269 * 120.00517 * 34.92432 * 19 18 17 22 22 N 1.30632 * 119.99583 * 22.45350 * 21 19 18 23 23 Si 1.86791 * 120.00435 * 202.45575 * 21 19 18 24 24 H 1.48504 * 109.47399 * 270.00298 * 23 21 19 25 25 H 1.48500 * 109.47027 * 29.99928 * 23 21 19 26 26 H 1.48496 * 109.47372 * 149.99773 * 23 21 19 27 27 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46918 * 299.99764 * 1 2 3 29 29 H 1.08999 * 109.47152 * 59.99394 * 1 2 3 30 30 H 1.08997 * 109.46613 * 22.01408 * 4 3 2 31 31 H 1.08999 * 109.47111 * 142.01636 * 4 3 2 32 32 H 1.08997 * 109.54072 * 55.57788 * 5 4 3 33 33 H 1.09008 * 109.52002 * 303.05700 * 6 5 4 34 34 H 1.08994 * 109.52712 * 63.24219 * 6 5 4 35 35 H 1.08994 * 109.47768 * 297.62313 * 7 6 5 36 36 H 1.08999 * 109.47792 * 177.59085 * 7 6 5 37 37 H 1.08999 * 109.48280 * 301.17263 * 9 8 7 38 38 H 1.09004 * 109.48723 * 181.14094 * 9 8 7 39 39 H 1.09000 * 109.52543 * 182.48116 * 10 9 8 40 40 H 1.09007 * 109.52226 * 62.29390 * 10 9 8 41 41 H 1.07997 * 119.95387 * 359.97438 * 14 13 11 42 42 H 1.07997 * 119.65869 * 179.71701 * 15 14 13 43 43 H 1.07994 * 119.71961 * 180.02562 * 16 15 14 44 44 H 1.08003 * 120.06033 * 180.02562 * 17 16 15 45 45 H 0.96996 * 120.00342 * 4.81844 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2005 2.0084 -1.2637 5 6 3.6473 1.8334 -1.7300 6 6 4.5930 2.5030 -0.7282 7 6 6.0306 2.3916 -1.2425 8 8 6.1208 2.9943 -2.5351 9 6 5.2936 2.3791 -3.5247 10 6 3.8264 2.4902 -3.1022 11 6 2.3732 1.8673 1.1627 12 8 2.7961 3.0075 1.1710 13 6 2.2633 1.1126 2.4244 14 6 2.4609 -0.2656 2.4376 15 6 2.3513 -0.9701 3.6218 16 6 2.0505 -0.3169 4.8093 17 6 1.8554 1.0450 4.8289 18 6 1.9602 1.7854 3.6370 19 6 1.7617 3.1803 3.6461 20 1 1.2926 3.6644 2.8024 21 6 2.1733 3.9401 4.7510 22 7 3.0995 3.4820 5.5502 23 14 1.3969 5.6070 5.0797 24 1 2.1735 6.6615 4.3795 25 1 -0.0017 5.6086 4.5807 26 1 1.4017 5.8760 6.5401 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.5246 1.6050 -2.0176 31 1 1.9914 3.0682 -1.1179 32 1 3.8816 0.7713 -1.8007 33 1 4.3250 3.5542 -0.6209 34 1 4.5121 2.0051 0.2380 35 1 6.3116 1.3407 -1.3111 36 1 6.7034 2.9038 -0.5547 37 1 5.5650 1.3281 -3.6232 38 1 5.4355 2.8824 -4.4812 39 1 3.1972 1.9831 -3.8337 40 1 3.5429 3.5411 -3.0428 41 1 2.6953 -0.7856 1.5205 42 1 2.5014 -2.0395 3.6232 43 1 1.9690 -0.8826 5.7256 44 1 1.6222 1.5448 5.7574 45 1 3.5519 2.6497 5.3416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868116128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:14 Heat of formation + Delta-G solvation = -65.354102 kcal Electronic energy + Delta-G solvation = -28268.005171 eV Core-core repulsion = 24445.106911 eV Total energy + Delta-G solvation = -3822.898260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.84450 -38.79691 -37.31313 -36.58398 -34.69427 -33.89456 -31.66422 -30.94028 -30.08836 -29.41040 -27.38326 -26.09890 -25.10647 -23.44724 -23.33680 -21.69137 -20.93163 -19.91231 -19.57156 -18.00915 -16.99632 -16.32497 -16.26935 -15.86995 -15.34790 -14.90943 -14.72385 -14.46748 -14.35167 -14.19812 -14.00819 -13.74510 -13.35745 -13.23500 -12.75420 -12.57507 -12.40846 -12.16321 -11.99905 -11.84848 -11.56863 -11.21997 -11.20359 -11.00573 -10.91200 -10.74073 -10.41704 -10.41099 -10.27549 -10.16397 -10.04491 -9.54414 -9.53100 -9.02169 -8.73957 -8.39014 -7.75057 -7.60457 -7.21618 -4.48180 2.26832 2.37872 2.77719 3.17158 3.28493 3.36077 3.78532 3.94887 4.01947 4.57509 4.61917 4.78638 4.80786 4.94750 5.12637 5.27633 5.36739 5.39938 5.43461 5.50356 5.52593 5.56921 5.69568 5.72926 5.78200 5.84973 5.89876 6.01529 6.05741 6.10366 6.19220 6.25766 6.40109 6.48281 6.68658 6.81747 6.95380 7.01719 7.26742 7.30501 7.53174 7.59837 7.74439 7.84007 8.00649 8.19374 8.20316 8.66942 8.79710 9.03827 10.03336 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.004904 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.256548 B = 5708.764598 C = 6788.772184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.142 6.142 3 N -0.490 5.490 4 C 0.126 3.874 5 C -0.101 4.101 6 C -0.144 4.144 7 C 0.060 3.940 8 O -0.386 6.386 9 C 0.064 3.936 10 C -0.148 4.148 11 C 0.585 3.415 12 O -0.509 6.509 13 C -0.265 4.265 14 C -0.025 4.025 15 C -0.265 4.265 16 C -0.071 4.071 17 C -0.209 4.209 18 C 0.129 3.871 19 C -0.480 4.480 20 H 0.082 0.918 21 C 0.039 3.961 22 N -0.789 5.789 23 Si 1.068 2.932 24 H -0.275 1.275 25 H -0.276 1.276 26 H -0.274 1.274 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 -3.996 -12.882 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.146 6.146 3 N -0.271 5.271 4 C 0.005 3.995 5 C -0.121 4.121 6 C -0.181 4.181 7 C -0.016 4.016 8 O -0.305 6.305 9 C -0.013 4.013 10 C -0.187 4.187 11 C 0.381 3.619 12 O -0.385 6.385 13 C -0.269 4.269 14 C -0.044 4.044 15 C -0.284 4.284 16 C -0.090 4.090 17 C -0.228 4.228 18 C 0.125 3.875 19 C -0.507 4.507 20 H 0.100 0.900 21 C -0.183 4.183 22 N -0.412 5.412 23 Si 0.892 3.108 24 H -0.200 1.200 25 H -0.201 1.201 26 H -0.199 1.199 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.155 -2.116 -11.791 12.035 hybrid contribution -0.575 -1.873 -1.054 2.224 sum -1.729 -3.989 -12.845 13.561 Atomic orbital electron populations 1.23228 0.82768 1.02958 1.00947 1.90569 1.19279 1.08169 1.96594 1.50380 1.60256 1.09945 1.06567 1.21591 0.95729 0.97248 0.84966 1.21605 0.95678 1.00151 0.94662 1.22329 0.93779 1.02920 0.99122 1.22666 0.97520 0.97343 0.84078 1.87906 1.65030 1.58203 1.19381 1.22496 0.89602 0.97525 0.91711 1.22189 0.97578 1.02090 0.96795 1.18596 0.75883 0.85302 0.82103 1.90775 1.45981 1.17255 1.84486 1.19334 1.21215 0.93491 0.92897 1.20922 0.94216 0.92741 0.96476 1.20291 1.16997 0.97784 0.93328 1.20759 0.97296 0.94585 0.96327 1.21143 1.10176 0.93198 0.98274 1.17441 0.87047 0.93387 0.89605 1.20621 1.33523 0.92351 1.04227 0.90013 1.27072 0.94400 1.05606 0.91271 1.70347 1.14216 1.21191 1.35450 0.83598 0.76565 0.73355 0.77302 1.20041 1.20106 1.19851 0.88463 0.92675 0.93886 0.90670 0.89667 0.90905 0.90095 0.90091 0.93699 0.88919 0.93522 0.89209 0.91091 0.90790 0.87764 0.89028 0.89020 0.87750 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 11.45 101.05 1.16 1.15 16 2 O -0.14 -2.38 8.37 -11.47 -0.10 -2.48 16 3 N -0.49 -8.89 2.95 -61.38 -0.18 -9.07 16 4 C 0.13 1.87 5.39 -4.04 -0.02 1.85 16 5 C -0.10 -1.40 2.49 -90.44 -0.22 -1.63 16 6 C -0.14 -2.37 3.92 -26.59 -0.10 -2.47 16 7 C 0.06 0.88 6.84 37.21 0.25 1.13 16 8 O -0.39 -5.57 10.77 -35.23 -0.38 -5.95 16 9 C 0.06 0.71 6.84 37.21 0.25 0.97 16 10 C -0.15 -1.65 5.42 -26.59 -0.14 -1.79 16 11 C 0.59 13.10 5.56 -12.51 -0.07 13.03 16 12 O -0.51 -12.52 11.88 5.27 0.06 -12.46 16 13 C -0.26 -6.37 5.69 -104.37 -0.59 -6.96 16 14 C -0.02 -0.54 8.67 -39.22 -0.34 -0.88 16 15 C -0.26 -5.63 10.03 -39.37 -0.39 -6.03 16 16 C -0.07 -1.57 10.01 -39.60 -0.40 -1.96 16 17 C -0.21 -5.15 8.01 -38.88 -0.31 -5.46 16 18 C 0.13 3.37 5.11 -106.54 -0.54 2.82 16 19 C -0.48 -12.83 7.43 -37.82 -0.28 -13.11 16 20 H 0.08 2.25 6.92 -52.49 -0.36 1.89 16 21 C 0.04 1.00 4.96 -17.30 -0.09 0.91 16 22 N -0.79 -21.05 12.66 55.56 0.70 -20.34 16 23 Si 1.07 22.20 29.99 -169.99 -5.10 17.10 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.36 7.61 -51.93 -0.40 0.96 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.49 7.64 -51.92 -0.40 1.09 16 34 H 0.08 1.59 5.80 -51.93 -0.30 1.29 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 2.11 6.41 -52.49 -0.34 1.77 16 42 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.10 2.63 7.11 -52.48 -0.37 2.25 16 45 H 0.30 8.21 6.83 -40.82 -0.28 7.93 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -29.20 359.76 -8.15 -37.35 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.74 Total: 8.87 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.85 Total: -18.45 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: 0.52 Total: -29.41 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.41 Total: -20.88 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.10 Total: 17.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.20 -8.15 -37.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868116128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.008 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds