Wall clock time and date at job start Tue Mar 31 2020 12:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.41596 * 113.99645 * 2 1 4 4 C 1.46501 * 120.00463 * 275.06241 * 3 2 1 5 5 C 1.53005 * 109.47176 * 262.01811 * 4 3 2 6 6 C 1.53172 * 109.54372 * 295.31397 * 5 4 3 7 7 C 1.53093 * 109.16401 * 183.15558 * 6 5 4 8 8 O 1.42902 * 109.41638 * 57.60256 * 7 6 5 9 9 C 1.42902 * 114.09798 * 298.84422 * 8 7 6 10 10 C 1.53093 * 109.41524 * 61.16010 * 9 8 7 11 11 C 1.34785 * 119.99919 * 95.07056 * 3 2 1 12 12 O 1.21609 * 119.99953 * 184.23597 * 11 3 2 13 13 C 1.47428 * 119.99878 * 4.23363 * 11 3 2 14 14 C 1.39232 * 120.28255 * 33.10250 * 13 11 3 15 15 C 1.38222 * 120.08942 * 180.27856 * 14 13 11 16 16 C 1.38825 * 120.67920 * 359.69893 * 15 14 13 17 17 C 1.37598 * 120.56843 * 0.02562 * 16 15 14 18 18 C 1.40707 * 119.88360 * 0.02562 * 17 16 15 19 19 C 1.40889 * 120.32920 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99580 * 214.92781 * 19 18 17 21 21 C 1.40269 * 120.00517 * 34.92432 * 19 18 17 22 22 N 1.30632 * 119.99583 * 22.45350 * 21 19 18 23 23 Si 1.86791 * 120.00435 * 202.45575 * 21 19 18 24 24 H 1.48504 * 109.47399 * 270.00298 * 23 21 19 25 25 H 1.48500 * 109.47027 * 29.99928 * 23 21 19 26 26 H 1.48496 * 109.47372 * 149.99773 * 23 21 19 27 27 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46918 * 299.99764 * 1 2 3 29 29 H 1.08999 * 109.47152 * 59.99394 * 1 2 3 30 30 H 1.08997 * 109.46613 * 22.01408 * 4 3 2 31 31 H 1.08999 * 109.47111 * 142.01636 * 4 3 2 32 32 H 1.08997 * 109.54072 * 55.57788 * 5 4 3 33 33 H 1.09008 * 109.52002 * 303.05700 * 6 5 4 34 34 H 1.08994 * 109.52712 * 63.24219 * 6 5 4 35 35 H 1.08994 * 109.47768 * 297.62313 * 7 6 5 36 36 H 1.08999 * 109.47792 * 177.59085 * 7 6 5 37 37 H 1.08999 * 109.48280 * 301.17263 * 9 8 7 38 38 H 1.09004 * 109.48723 * 181.14094 * 9 8 7 39 39 H 1.09000 * 109.52543 * 182.48116 * 10 9 8 40 40 H 1.09007 * 109.52226 * 62.29390 * 10 9 8 41 41 H 1.07997 * 119.95387 * 359.97438 * 14 13 11 42 42 H 1.07997 * 119.65869 * 179.71701 * 15 14 13 43 43 H 1.07994 * 119.71961 * 180.02562 * 16 15 14 44 44 H 1.08003 * 120.06033 * 180.02562 * 17 16 15 45 45 H 0.96996 * 120.00342 * 4.81844 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2005 2.0084 -1.2637 5 6 3.6473 1.8334 -1.7300 6 6 4.5930 2.5030 -0.7282 7 6 6.0306 2.3916 -1.2425 8 8 6.1208 2.9943 -2.5351 9 6 5.2936 2.3791 -3.5247 10 6 3.8264 2.4902 -3.1022 11 6 2.3732 1.8673 1.1627 12 8 2.7961 3.0075 1.1710 13 6 2.2633 1.1126 2.4244 14 6 2.4609 -0.2656 2.4376 15 6 2.3513 -0.9701 3.6218 16 6 2.0505 -0.3169 4.8093 17 6 1.8554 1.0450 4.8289 18 6 1.9602 1.7854 3.6370 19 6 1.7617 3.1803 3.6461 20 1 1.2926 3.6644 2.8024 21 6 2.1733 3.9401 4.7510 22 7 3.0995 3.4820 5.5502 23 14 1.3969 5.6070 5.0797 24 1 2.1735 6.6615 4.3795 25 1 -0.0017 5.6086 4.5807 26 1 1.4017 5.8760 6.5401 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.5246 1.6050 -2.0176 31 1 1.9914 3.0682 -1.1179 32 1 3.8816 0.7713 -1.8007 33 1 4.3250 3.5542 -0.6209 34 1 4.5121 2.0051 0.2380 35 1 6.3116 1.3407 -1.3111 36 1 6.7034 2.9038 -0.5547 37 1 5.5650 1.3281 -3.6232 38 1 5.4355 2.8824 -4.4812 39 1 3.1972 1.9831 -3.8337 40 1 3.5429 3.5411 -3.0428 41 1 2.6953 -0.7856 1.5205 42 1 2.5014 -2.0395 3.6232 43 1 1.9690 -0.8826 5.7256 44 1 1.6222 1.5448 5.7574 45 1 3.5519 2.6497 5.3416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868116128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:13 Heat of formation + Delta-G solvation = -81.812128 kcal Electronic energy + Delta-G solvation = -28268.718845 eV Core-core repulsion = 24445.106911 eV Total energy + Delta-G solvation = -3823.611933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29597 -40.12339 -38.97722 -38.14288 -35.91551 -35.77516 -33.05437 -32.05587 -31.83247 -31.26040 -28.66666 -27.45605 -26.85015 -24.74066 -24.54054 -23.27155 -22.71638 -21.15512 -21.04357 -19.85063 -18.62051 -17.75173 -17.51910 -16.96638 -16.75095 -16.50823 -16.21670 -15.94211 -15.78413 -15.52221 -15.34661 -15.27732 -14.83322 -14.56613 -14.38884 -14.21935 -13.91950 -13.75920 -13.30100 -13.12111 -12.95596 -12.79092 -12.68955 -12.47494 -12.28884 -12.12326 -12.01553 -11.90018 -11.65693 -11.55688 -11.27392 -11.27045 -10.91542 -10.65172 -10.44975 -9.86684 -9.58801 -9.49049 -9.16764 -6.47116 0.44858 0.91249 1.00746 1.44758 1.60039 1.73629 2.05012 2.29333 2.69618 2.93547 3.24813 3.51123 3.65906 3.74553 3.87757 4.05758 4.21143 4.23570 4.34800 4.36326 4.38702 4.43876 4.45142 4.50379 4.52938 4.61762 4.70609 4.74429 4.76466 4.81696 4.85422 4.93597 4.97191 5.12274 5.13939 5.21614 5.36700 5.42099 5.55870 5.63913 5.76177 5.80277 5.95101 6.16100 6.23527 6.33334 6.56454 6.78081 6.86480 7.35498 8.03091 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.004904 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.256548 B = 5708.764598 C = 6788.772184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.147 6.147 3 N -0.483 5.483 4 C 0.124 3.876 5 C -0.094 4.094 6 C -0.138 4.138 7 C 0.066 3.934 8 O -0.403 6.403 9 C 0.055 3.945 10 C -0.140 4.140 11 C 0.582 3.418 12 O -0.544 6.544 13 C -0.277 4.277 14 C -0.026 4.026 15 C -0.249 4.249 16 C -0.069 4.069 17 C -0.229 4.229 18 C 0.105 3.895 19 C -0.516 4.516 20 H 0.060 0.940 21 C 0.004 3.996 22 N -0.814 5.814 23 Si 1.113 2.887 24 H -0.270 1.270 25 H -0.264 1.264 26 H -0.261 1.261 27 H 0.132 0.868 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.089 0.911 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -6.265 -15.340 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.151 6.151 3 N -0.263 5.263 4 C 0.004 3.996 5 C -0.114 4.114 6 C -0.176 4.176 7 C -0.010 4.010 8 O -0.323 6.323 9 C -0.021 4.021 10 C -0.178 4.178 11 C 0.377 3.623 12 O -0.422 6.422 13 C -0.282 4.282 14 C -0.045 4.045 15 C -0.268 4.268 16 C -0.087 4.087 17 C -0.248 4.248 18 C 0.102 3.898 19 C -0.544 4.544 20 H 0.078 0.922 21 C -0.211 4.211 22 N -0.437 5.437 23 Si 0.931 3.069 24 H -0.195 1.195 25 H -0.189 1.189 26 H -0.185 1.185 27 H 0.150 0.850 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.107 0.893 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.873 -4.427 -14.291 15.077 hybrid contribution -0.385 -1.440 -0.456 1.559 sum -2.258 -5.868 -14.747 16.031 Atomic orbital electron populations 1.23456 0.80834 1.05140 1.00755 1.90528 1.21181 1.06726 1.96620 1.50090 1.59343 1.10468 1.06393 1.21837 0.97461 0.96237 0.84082 1.21562 0.93965 1.00400 0.95455 1.22167 0.96192 1.00812 0.98426 1.22539 0.95904 0.98092 0.84492 1.87888 1.65929 1.58997 1.19443 1.22801 0.88921 0.98656 0.91684 1.22166 0.98416 1.01720 0.95504 1.18405 0.75953 0.84918 0.83069 1.90754 1.47441 1.18579 1.85442 1.19747 1.20200 0.94827 0.93388 1.21173 0.93669 0.91830 0.97830 1.20778 1.14009 0.99643 0.92387 1.21122 0.95775 0.93627 0.98198 1.21126 1.11832 0.94506 0.97382 1.17788 0.87327 0.93697 0.91032 1.20557 1.36210 0.93174 1.04500 0.92183 1.28317 0.93786 1.08292 0.90751 1.70470 1.15674 1.20998 1.36574 0.83066 0.76368 0.69631 0.77860 1.19531 1.18883 1.18532 0.84990 0.95456 0.91490 0.86822 0.91352 0.90215 0.93114 0.93854 0.92245 0.89637 0.92042 0.86726 0.87644 0.91578 0.85671 0.85180 0.85865 0.89312 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.11 11.45 113.37 1.30 1.19 16 2 O -0.15 -4.56 8.37 -38.77 -0.32 -4.88 16 3 N -0.48 -17.25 2.95 -466.35 -1.38 -18.63 16 4 C 0.12 3.51 5.39 86.38 0.47 3.97 16 5 C -0.09 -2.47 2.49 -10.67 -0.03 -2.50 16 6 C -0.14 -4.69 3.92 30.68 0.12 -4.57 16 7 C 0.07 1.93 6.84 72.01 0.49 2.42 16 8 O -0.40 -11.15 10.77 -148.98 -1.60 -12.75 16 9 C 0.06 1.07 6.84 72.01 0.49 1.57 16 10 C -0.14 -2.71 5.42 30.68 0.17 -2.55 16 11 C 0.58 26.93 5.56 86.66 0.48 27.41 16 12 O -0.54 -28.49 11.88 -4.06 -0.05 -28.54 16 13 C -0.28 -13.63 5.69 -19.70 -0.11 -13.74 16 14 C -0.03 -1.12 8.67 22.50 0.20 -0.93 16 15 C -0.25 -9.94 10.03 22.41 0.22 -9.71 16 16 C -0.07 -2.95 10.01 22.26 0.22 -2.73 16 17 C -0.23 -11.64 8.01 22.72 0.18 -11.46 16 18 C 0.11 5.73 5.11 -21.11 -0.11 5.62 16 19 C -0.52 -29.40 7.43 23.41 0.17 -29.23 16 20 H 0.06 3.56 6.92 -2.91 -0.02 3.54 16 21 C 0.00 0.24 4.96 85.37 0.42 0.67 16 22 N -0.81 -45.83 12.66 21.88 0.28 -45.56 16 23 Si 1.11 46.70 29.99 68.60 2.06 48.76 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 27 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.07 2.20 7.61 -2.39 -0.02 2.18 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.99 7.64 -2.38 -0.02 1.97 16 34 H 0.04 1.78 5.80 -2.39 -0.01 1.77 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.13 4.75 6.41 -2.91 -0.02 4.73 16 42 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 43 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 44 H 0.09 4.70 7.11 -2.91 -0.02 4.68 16 45 H 0.28 16.48 6.83 -92.71 -0.63 15.84 16 Total: -1.00 -68.94 359.76 4.79 -64.14 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 1.12 Total: 32.01 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 4.69 Total: -34.56 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -1.10 Total: -64.18 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -1.98 Total: -46.18 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.06 Total: 48.76 kcal Total: -68.94 4.79 -64.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868116128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.669 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds