Wall clock time and date at job start Tue Mar 31 2020 12:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34710 * 116.99774 * 2 1 4 4 O 1.21465 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.47725 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.24666 * 0.02562 * 5 3 2 7 7 C 1.37705 * 119.70982 * 180.09334 * 6 5 3 8 8 C 1.38903 * 120.59506 * 0.02562 * 7 6 5 9 9 C 1.38021 * 119.95138 * 359.78004 * 8 7 6 10 10 C 1.38394 * 119.99840 * 0.30989 * 9 8 7 11 11 C 1.50745 * 121.64130 * 180.54336 * 9 8 7 12 12 C 1.52886 * 109.96620 * 342.81608 * 11 9 8 13 13 N 1.47153 * 108.49889 * 50.48865 * 12 11 9 14 14 C 1.46901 * 111.00012 * 165.28961 * 13 12 11 15 15 C 1.52999 * 109.46955 * 190.00260 * 14 13 12 16 16 O 1.42895 * 109.47447 * 64.99492 * 15 14 13 17 17 C 1.42904 * 114.00042 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46959 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00005 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00231 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47057 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47154 * 120.00089 * 22 20 18 25 25 H 1.48503 * 109.47138 * 239.99812 * 22 20 18 26 26 C 1.46615 * 110.27319 * 288.72168 * 13 12 11 27 27 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47197 * 299.99657 * 1 2 3 29 29 H 1.09001 * 109.47477 * 59.99112 * 1 2 3 30 30 H 1.07999 * 120.14443 * 0.37330 * 6 5 3 31 31 H 1.07996 * 119.69983 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.88076 * 179.82621 * 10 9 8 33 33 H 1.09001 * 109.38613 * 102.96591 * 11 9 8 34 34 H 1.09001 * 109.39193 * 222.65845 * 11 9 8 35 35 H 1.09000 * 109.63232 * 170.19376 * 12 11 9 36 36 H 1.08999 * 109.62637 * 290.58479 * 12 11 9 37 37 H 1.09007 * 109.46758 * 309.99411 * 14 13 12 38 38 H 1.08991 * 109.47251 * 69.99830 * 14 13 12 39 39 H 1.08997 * 109.47025 * 184.99957 * 15 14 13 40 40 H 1.09007 * 109.46991 * 304.99398 * 15 14 13 41 41 H 1.09000 * 109.46968 * 299.99556 * 17 16 15 42 42 H 1.08990 * 109.47171 * 59.99817 * 17 16 15 43 43 H 0.96998 * 119.99975 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.26429 * 292.34714 * 26 13 12 45 45 H 1.08999 * 109.26737 * 172.87685 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3044 0.1096 -0.0017 7 6 5.6788 0.1946 -0.0002 8 6 6.3107 1.4316 0.0028 9 6 5.5592 2.5893 -0.0002 10 6 4.1771 2.5170 0.0003 11 6 6.2050 3.9513 -0.0092 12 6 7.6707 3.8369 0.4106 13 7 8.3064 2.7830 -0.3959 14 6 9.7703 2.8556 -0.2974 15 6 10.3981 1.9184 -1.3310 16 8 10.0843 2.3808 -2.6461 17 6 10.6257 1.5709 -3.6916 18 6 10.2352 2.1484 -5.0277 19 1 9.6334 3.0440 -5.0738 20 6 10.6463 1.5334 -6.1913 21 7 11.3795 0.4431 -6.1351 22 14 10.1617 2.2488 -7.8474 23 1 9.3411 3.4688 -7.6386 24 1 11.3853 2.5995 -8.6122 25 1 9.3730 1.2464 -8.6079 26 6 7.8170 1.4636 0.0156 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 3.8207 -0.8559 -0.0082 31 1 6.2708 -0.7087 -0.0015 32 1 3.5909 3.4241 0.0008 33 1 6.1480 4.3721 -1.0131 34 1 5.6794 4.6057 0.6862 35 1 8.1766 4.7866 0.2367 36 1 7.7296 3.5789 1.4680 37 1 10.0970 3.8779 -0.4882 38 1 10.0826 2.5551 0.7027 39 1 11.4800 1.9047 -1.1992 40 1 10.0029 0.9115 -1.1959 41 1 11.7124 1.5497 -3.6090 42 1 10.2349 0.5572 -3.6053 43 1 11.6690 0.0106 -6.9537 44 1 8.1729 1.2461 1.0227 45 1 8.1987 0.7081 -0.6712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880351515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:51 Heat of formation + Delta-G solvation = -103.124993 kcal Electronic energy + Delta-G solvation = -26135.114546 eV Core-core repulsion = 22310.578418 eV Total energy + Delta-G solvation = -3824.536128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85502 -39.91201 -37.69047 -36.64262 -36.16485 -33.33791 -32.63252 -32.14705 -29.82464 -28.86272 -27.99237 -26.78699 -25.28851 -23.63453 -22.73756 -22.29615 -21.89481 -20.92734 -19.64749 -17.83391 -17.28261 -16.58093 -16.39518 -16.34654 -16.03066 -15.35685 -15.19471 -14.80179 -14.62187 -14.36456 -14.27993 -13.83119 -13.76774 -13.52378 -13.27007 -13.20409 -12.85392 -12.50663 -12.41020 -12.10987 -12.03138 -11.67989 -11.51739 -11.31135 -11.12505 -11.07643 -10.88920 -10.77195 -10.74129 -10.55683 -10.35619 -9.95205 -9.06722 -9.02513 -8.78373 -8.75915 -8.19207 -8.09018 -6.07216 -4.07761 0.53429 1.21707 2.34512 2.44056 3.32081 3.38537 3.45730 3.58272 3.87293 4.38631 4.43436 4.53233 4.61868 4.76384 4.81081 4.83486 4.89118 4.99516 5.09653 5.16597 5.21425 5.29589 5.30075 5.32561 5.38352 5.53443 5.59702 5.64165 5.71861 5.75663 5.88195 5.94144 5.99590 6.06335 6.07769 6.11891 6.23096 6.28012 6.41170 6.70798 7.10234 7.12130 7.18385 7.47188 7.51133 7.85258 8.20870 8.65315 9.07273 9.57078 11.04549 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.002882 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.198718 B = 9714.232083 C =11049.429662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.512 3.488 4 O -0.510 6.510 5 C -0.135 4.135 6 C -0.065 4.065 7 C -0.128 4.128 8 C -0.030 4.030 9 C -0.078 4.078 10 C -0.053 4.053 11 C -0.076 4.076 12 C 0.052 3.948 13 N -0.518 5.518 14 C 0.061 3.939 15 C 0.065 3.935 16 O -0.379 6.379 17 C 0.194 3.806 18 C -0.508 4.508 19 H 0.067 0.933 20 C 0.055 3.945 21 N -0.901 5.901 22 Si 0.906 3.094 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.085 3.915 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.262 0.738 44 H 0.050 0.950 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.873 -0.241 18.521 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.358 3.642 4 O -0.399 6.399 5 C -0.136 4.136 6 C -0.083 4.083 7 C -0.147 4.147 8 C -0.030 4.030 9 C -0.078 4.078 10 C -0.071 4.071 11 C -0.113 4.113 12 C -0.076 4.076 13 N -0.242 5.242 14 C -0.067 4.067 15 C -0.013 4.013 16 O -0.298 6.298 17 C 0.120 3.880 18 C -0.547 4.547 19 H 0.085 0.915 20 C -0.146 4.146 21 N -0.540 5.540 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.043 4.043 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.249 0.165 17.863 23.488 hybrid contribution -0.029 -0.260 -0.141 0.297 sum -15.278 -0.095 17.722 23.399 Atomic orbital electron populations 1.23281 0.76008 1.03767 1.02639 1.86549 1.23533 1.32729 1.84368 1.21261 0.89199 0.81345 0.72412 1.90822 1.66864 1.36053 1.46158 1.18934 0.88617 0.95146 1.10944 1.21297 0.93642 0.97784 0.95618 1.21063 0.94330 0.97477 1.01783 1.19973 0.95562 0.92678 0.94788 1.19539 0.92284 0.95586 1.00380 1.21168 0.93847 0.96714 0.95379 1.20570 0.94551 0.92846 1.03343 1.22152 0.94694 0.96127 0.94619 1.62162 1.06052 1.02079 1.53890 1.22207 0.86277 1.01847 0.96332 1.22251 0.96971 0.95867 0.86203 1.87956 1.76370 1.53332 1.12177 1.20176 0.92760 0.90172 0.84908 1.21099 1.32678 1.11575 0.89322 0.91484 1.24947 0.95161 0.95002 0.99498 1.69973 1.36644 1.19145 1.28273 0.86308 0.78259 0.79174 0.82930 1.19440 1.20914 1.20890 1.21141 0.90297 0.93368 0.99475 0.87947 0.91871 0.91763 0.84505 0.84932 0.84640 0.89053 0.90332 0.89869 0.94691 0.89681 0.94133 0.94189 0.94682 0.98019 0.97965 0.92810 0.93254 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.77 9.83 -40.52 -0.40 -4.17 16 3 C 0.51 6.45 7.90 34.61 0.27 6.72 16 4 O -0.51 -7.46 16.14 -19.24 -0.31 -7.77 16 5 C -0.14 -1.66 5.87 -105.05 -0.62 -2.28 16 6 C -0.07 -0.72 9.62 -39.25 -0.38 -1.09 16 7 C -0.13 -1.44 9.62 -39.53 -0.38 -1.82 16 8 C -0.03 -0.37 5.81 -104.47 -0.61 -0.98 16 9 C -0.08 -0.97 5.77 -104.62 -0.60 -1.57 16 10 C -0.05 -0.65 9.20 -39.08 -0.36 -1.01 16 11 C -0.08 -0.84 5.94 -27.92 -0.17 -1.01 16 12 C 0.05 0.59 5.57 -3.74 -0.02 0.57 16 13 N -0.52 -7.42 4.62 -236.19 -1.09 -8.51 16 14 C 0.06 0.86 5.33 -3.82 -0.02 0.84 16 15 C 0.07 1.17 6.00 37.16 0.22 1.39 16 16 O -0.38 -9.11 10.27 -35.23 -0.36 -9.47 16 17 C 0.19 5.35 5.69 36.01 0.20 5.56 16 18 C -0.51 -15.15 9.43 -34.44 -0.32 -15.48 16 19 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 20 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 22 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 C 0.08 1.09 4.92 -5.14 -0.03 1.07 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.14 1.24 7.62 -52.49 -0.40 0.84 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 1.56 7.64 -52.49 -0.40 1.16 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16 36 H 0.03 0.35 8.05 -51.93 -0.42 -0.06 16 37 H 0.08 1.19 7.89 -51.92 -0.41 0.78 16 38 H 0.04 0.46 8.06 -51.93 -0.42 0.04 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.61 6.44 -51.93 -0.33 0.27 16 41 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 42 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 45 H 0.10 1.40 6.54 -51.93 -0.34 1.06 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -34.44 375.17 -9.52 -43.96 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -6.90 Total: -4.14 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.83 Total: -6.26 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.36 Total: -34.94 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.07 Total: -21.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.44 -9.52 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880351515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.161 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds