Wall clock time and date at job start Tue Mar 31 2020 12:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34710 * 116.99774 * 2 1 4 4 O 1.21465 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.47725 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.24666 * 0.02562 * 5 3 2 7 7 C 1.37705 * 119.70982 * 180.09334 * 6 5 3 8 8 C 1.38903 * 120.59506 * 0.02562 * 7 6 5 9 9 C 1.38021 * 119.95138 * 359.78004 * 8 7 6 10 10 C 1.38394 * 119.99840 * 0.30989 * 9 8 7 11 11 C 1.50745 * 121.64130 * 180.54336 * 9 8 7 12 12 C 1.52886 * 109.96620 * 342.81608 * 11 9 8 13 13 N 1.47153 * 108.49889 * 50.48865 * 12 11 9 14 14 C 1.46901 * 111.00012 * 165.28961 * 13 12 11 15 15 C 1.52999 * 109.46955 * 190.00260 * 14 13 12 16 16 O 1.42895 * 109.47447 * 64.99492 * 15 14 13 17 17 C 1.42904 * 114.00042 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46959 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00005 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00231 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47057 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47154 * 120.00089 * 22 20 18 25 25 H 1.48503 * 109.47138 * 239.99812 * 22 20 18 26 26 C 1.46615 * 110.27319 * 288.72168 * 13 12 11 27 27 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47197 * 299.99657 * 1 2 3 29 29 H 1.09001 * 109.47477 * 59.99112 * 1 2 3 30 30 H 1.07999 * 120.14443 * 0.37330 * 6 5 3 31 31 H 1.07996 * 119.69983 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.88076 * 179.82621 * 10 9 8 33 33 H 1.09001 * 109.38613 * 102.96591 * 11 9 8 34 34 H 1.09001 * 109.39193 * 222.65845 * 11 9 8 35 35 H 1.09000 * 109.63232 * 170.19376 * 12 11 9 36 36 H 1.08999 * 109.62637 * 290.58479 * 12 11 9 37 37 H 1.09007 * 109.46758 * 309.99411 * 14 13 12 38 38 H 1.08991 * 109.47251 * 69.99830 * 14 13 12 39 39 H 1.08997 * 109.47025 * 184.99957 * 15 14 13 40 40 H 1.09007 * 109.46991 * 304.99398 * 15 14 13 41 41 H 1.09000 * 109.46968 * 299.99556 * 17 16 15 42 42 H 1.08990 * 109.47171 * 59.99817 * 17 16 15 43 43 H 0.96998 * 119.99975 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.26429 * 292.34714 * 26 13 12 45 45 H 1.08999 * 109.26737 * 172.87685 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3044 0.1096 -0.0017 7 6 5.6788 0.1946 -0.0002 8 6 6.3107 1.4316 0.0028 9 6 5.5592 2.5893 -0.0002 10 6 4.1771 2.5170 0.0003 11 6 6.2050 3.9513 -0.0092 12 6 7.6707 3.8369 0.4106 13 7 8.3064 2.7830 -0.3959 14 6 9.7703 2.8556 -0.2974 15 6 10.3981 1.9184 -1.3310 16 8 10.0843 2.3808 -2.6461 17 6 10.6257 1.5709 -3.6916 18 6 10.2352 2.1484 -5.0277 19 1 9.6334 3.0440 -5.0738 20 6 10.6463 1.5334 -6.1913 21 7 11.3795 0.4431 -6.1351 22 14 10.1617 2.2488 -7.8474 23 1 9.3411 3.4688 -7.6386 24 1 11.3853 2.5995 -8.6122 25 1 9.3730 1.2464 -8.6079 26 6 7.8170 1.4636 0.0156 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 3.8207 -0.8559 -0.0082 31 1 6.2708 -0.7087 -0.0015 32 1 3.5909 3.4241 0.0008 33 1 6.1480 4.3721 -1.0131 34 1 5.6794 4.6057 0.6862 35 1 8.1766 4.7866 0.2367 36 1 7.7296 3.5789 1.4680 37 1 10.0970 3.8779 -0.4882 38 1 10.0826 2.5551 0.7027 39 1 11.4800 1.9047 -1.1992 40 1 10.0029 0.9115 -1.1959 41 1 11.7124 1.5497 -3.6090 42 1 10.2349 0.5572 -3.6053 43 1 11.6690 0.0106 -6.9537 44 1 8.1729 1.2461 1.0227 45 1 8.1987 0.7081 -0.6712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880351515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:50 Heat of formation + Delta-G solvation = -124.642747 kcal Electronic energy + Delta-G solvation = -26136.047626 eV Core-core repulsion = 22310.578418 eV Total energy + Delta-G solvation = -3825.469208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77077 -40.84431 -38.94453 -37.79865 -37.45414 -34.96820 -34.15225 -33.16196 -30.96117 -29.97923 -29.10414 -28.40464 -26.35269 -24.56649 -24.43306 -23.67449 -22.94657 -22.02450 -20.56376 -18.73955 -18.60625 -18.17373 -17.50781 -17.43445 -17.36192 -16.80612 -16.35554 -16.18367 -15.89181 -15.61647 -15.38392 -15.06865 -14.76125 -14.61336 -14.38894 -14.23617 -14.03037 -13.82932 -13.42608 -13.16800 -13.07872 -13.00673 -12.90157 -12.72974 -12.61332 -12.39210 -12.22272 -12.13080 -11.86283 -11.83365 -11.57097 -11.47796 -11.20186 -10.83717 -10.13909 -9.97515 -9.68325 -9.15958 -8.30631 -6.41633 -0.40463 0.32340 1.39777 1.39964 1.41152 1.56066 1.63208 2.36044 2.66435 2.88139 3.03136 3.28484 3.54755 3.66663 3.74761 3.88731 4.06033 4.16900 4.21494 4.27092 4.30446 4.31192 4.40188 4.43438 4.47410 4.52751 4.58251 4.67917 4.72051 4.78033 4.82181 4.86137 4.89215 4.99150 5.01932 5.13682 5.18378 5.22869 5.23130 5.34979 5.48538 5.57976 5.81311 6.00256 6.13560 6.16159 6.59635 6.60207 6.90390 7.30709 8.81886 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.002882 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.198718 B = 9714.232083 C =11049.429662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.514 3.486 4 O -0.538 6.538 5 C -0.148 4.148 6 C -0.061 4.061 7 C -0.131 4.131 8 C -0.045 4.045 9 C -0.088 4.088 10 C -0.060 4.060 11 C -0.075 4.075 12 C 0.055 3.945 13 N -0.550 5.550 14 C 0.071 3.929 15 C 0.054 3.946 16 O -0.395 6.395 17 C 0.210 3.790 18 C -0.542 4.542 19 H 0.058 0.942 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.980 3.020 23 H -0.266 1.266 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.088 3.912 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.039 0.961 41 H -0.016 1.016 42 H -0.018 1.018 43 H 0.270 0.730 44 H 0.072 0.928 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.518 -0.322 18.991 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.361 3.639 4 O -0.429 6.429 5 C -0.150 4.150 6 C -0.079 4.079 7 C -0.149 4.149 8 C -0.045 4.045 9 C -0.088 4.088 10 C -0.079 4.079 11 C -0.112 4.112 12 C -0.072 4.072 13 N -0.274 5.274 14 C -0.057 4.057 15 C -0.023 4.023 16 O -0.315 6.315 17 C 0.135 3.865 18 C -0.580 4.580 19 H 0.076 0.924 20 C -0.192 4.192 21 N -0.571 5.571 22 Si 0.803 3.197 23 H -0.190 1.190 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.039 4.039 27 H 0.154 0.846 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.002 0.998 42 H 0.000 1.000 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.895 0.069 18.362 24.286 hybrid contribution 0.137 -0.309 -0.206 0.395 sum -15.759 -0.239 18.156 24.042 Atomic orbital electron populations 1.23610 0.74169 1.05994 1.02662 1.86537 1.25345 1.31551 1.83780 1.21351 0.89337 0.81523 0.71735 1.90801 1.67443 1.36999 1.47681 1.19104 0.88787 0.95682 1.11378 1.21513 0.93534 0.98233 0.94616 1.21316 0.94662 0.97807 1.01135 1.20144 0.95613 0.93356 0.95431 1.19712 0.92398 0.96190 1.00537 1.21251 0.93954 0.97014 0.95642 1.20602 0.94892 0.92636 1.03084 1.22192 0.94337 0.95546 0.95155 1.62083 1.06194 1.03403 1.55759 1.22111 0.86366 1.00764 0.96421 1.22640 0.98101 0.97391 0.84195 1.87907 1.76357 1.53139 1.14064 1.19759 0.91464 0.89444 0.85811 1.21402 1.33659 1.11922 0.91016 0.92402 1.25921 0.94577 0.95149 1.03567 1.70069 1.37000 1.20108 1.29876 0.85189 0.78421 0.78550 0.77578 1.19036 1.19506 1.19739 1.21082 0.90416 0.92351 1.00093 0.84635 0.91615 0.92052 0.82527 0.83083 0.84508 0.90700 0.87925 0.89147 0.92855 0.89706 0.90522 0.93393 0.94257 0.99795 1.00035 0.92113 0.90997 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.14 9.83 -56.19 -0.55 -7.70 16 3 C 0.51 12.74 7.90 70.33 0.56 13.29 16 4 O -0.54 -15.79 16.14 19.95 0.32 -15.47 16 5 C -0.15 -3.57 5.87 -20.14 -0.12 -3.69 16 6 C -0.06 -1.27 9.62 22.49 0.22 -1.05 16 7 C -0.13 -2.80 9.62 22.30 0.21 -2.59 16 8 C -0.04 -1.10 5.81 -19.76 -0.11 -1.22 16 9 C -0.09 -2.15 5.77 -19.86 -0.11 -2.26 16 10 C -0.06 -1.47 9.20 22.59 0.21 -1.26 16 11 C -0.07 -1.60 5.94 29.82 0.18 -1.43 16 12 C 0.05 1.15 5.57 86.22 0.48 1.63 16 13 N -0.55 -15.15 4.62 -901.17 -4.17 -19.31 16 14 C 0.07 1.88 5.33 86.30 0.46 2.34 16 15 C 0.05 1.93 6.00 71.98 0.43 2.36 16 16 O -0.40 -19.40 10.27 -148.98 -1.53 -20.93 16 17 C 0.21 11.97 5.69 71.24 0.41 12.37 16 18 C -0.54 -32.97 9.43 25.60 0.24 -32.73 16 19 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 20 C 0.01 0.36 5.46 84.66 0.46 0.82 16 21 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 22 Si 0.98 45.28 29.54 68.60 2.03 47.31 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.09 2.17 4.92 85.60 0.42 2.59 16 27 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.16 2.54 7.62 -2.91 -0.02 2.52 16 31 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.14 3.19 7.64 -2.91 -0.02 3.17 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.74 7.85 -2.39 -0.02 1.72 16 36 H 0.05 0.93 8.05 -2.39 -0.02 0.91 16 37 H 0.08 2.26 7.89 -2.38 -0.02 2.24 16 38 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.36 6.44 -2.38 -0.02 1.35 16 41 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.07 1.41 8.07 -2.39 -0.02 1.39 16 45 H 0.08 2.26 6.54 -2.39 -0.02 2.24 16 Total: -1.00 -74.91 375.17 2.49 -72.43 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.98 Total: 9.13 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.12 Total: -9.23 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -3.88 Total: -75.54 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.76 Total: -44.09 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -74.91 2.49 -72.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880351515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.214 kcal (2) G-P(sol) polarization free energy of solvation -74.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds