Wall clock time and date at job start Tue Mar 31 2020 12:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00246 * 2 1 4 4 H 1.09002 * 112.84846 * 339.67091 * 3 2 1 5 5 C 1.53783 * 113.61167 * 110.86281 * 3 2 1 6 6 C 1.54043 * 86.98454 * 89.16495 * 5 3 2 7 7 H 1.08997 * 113.69225 * 270.86721 * 6 5 3 8 8 C 1.52998 * 113.62169 * 139.97642 * 6 5 3 9 9 N 1.46500 * 109.47331 * 87.50461 * 8 6 5 10 10 C 1.34778 * 120.00325 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99771 * 179.97438 * 10 9 8 13 13 C 1.50705 * 109.46610 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.92966 * 269.72534 * 13 12 10 15 15 C 1.38102 * 120.06553 * 179.73126 * 14 13 12 16 16 C 1.38881 * 119.92941 * 0.56482 * 15 14 13 17 17 O 1.35754 * 120.06844 * 179.68316 * 16 15 14 18 18 C 1.34834 * 117.00031 * 174.48773 * 17 16 15 19 19 H 1.07998 * 119.99849 * 5.06157 * 18 17 16 20 20 C 1.38647 * 119.99819 * 185.05788 * 18 17 16 21 21 N 1.31552 * 119.99962 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00315 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47191 * 89.99497 * 22 20 18 24 24 H 1.48505 * 109.47155 * 209.99670 * 22 20 18 25 25 H 1.48501 * 109.46753 * 329.99656 * 22 20 18 26 26 C 1.38880 * 119.86356 * 359.71076 * 16 15 14 27 27 C 1.38097 * 119.92841 * 359.97438 * 26 16 15 28 28 C 1.53776 * 87.08090 * 25.42959 * 6 5 3 29 29 H 1.09001 * 109.46646 * 299.99895 * 1 2 3 30 30 H 1.08994 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46893 * 59.99311 * 1 2 3 32 32 H 1.09007 * 113.61035 * 203.66475 * 5 3 2 33 33 H 1.08996 * 113.61393 * 334.56808 * 5 3 2 34 34 H 1.09003 * 109.47300 * 207.50462 * 8 6 5 35 35 H 1.09003 * 109.47329 * 327.50284 * 8 6 5 36 36 H 0.97006 * 119.99524 * 0.02562 * 9 8 6 37 37 H 1.09003 * 109.47297 * 299.99859 * 12 10 9 38 38 H 1.08996 * 109.47177 * 60.00026 * 12 10 9 39 39 H 1.07995 * 119.96904 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.03758 * 180.27645 * 15 14 13 41 41 H 0.97004 * 120.00629 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.03329 * 180.02562 * 26 16 15 43 43 H 1.08008 * 119.96448 * 180.02562 * 27 26 16 44 44 H 1.09002 * 113.62110 * 220.02267 * 28 6 5 45 45 H 1.09004 * 113.69269 * 89.12995 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3220 2.0752 -0.3490 5 6 2.7193 1.6640 1.3167 6 6 3.9895 1.0404 0.7079 7 1 4.0887 -0.0278 0.9009 8 6 5.2669 1.8218 1.0216 9 7 5.8215 1.3596 2.2964 10 6 6.9538 1.9098 2.7778 11 8 7.5133 2.7879 2.1559 12 6 7.5238 1.4347 4.0895 13 6 8.7822 2.2043 4.3984 14 6 10.0061 1.7285 3.9645 15 6 11.1604 2.4343 4.2412 16 6 11.0925 3.6170 4.9661 17 8 12.2261 4.3098 5.2452 18 6 12.0794 5.5050 5.8517 19 1 11.1002 5.8340 6.1669 20 6 13.1856 6.3116 6.0709 21 7 13.0426 7.4775 6.6631 22 14 14.8792 5.7427 5.5252 23 1 15.1310 6.2004 4.1352 24 1 15.9088 6.3156 6.4292 25 1 14.9440 4.2601 5.5777 26 6 9.8625 4.0892 5.4053 27 6 8.7111 3.3822 5.1197 28 6 3.3924 1.3644 -0.6716 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 2.8001 2.7370 1.4909 33 1 2.3358 1.1215 2.1808 34 1 5.9963 1.6595 0.2280 35 1 5.0352 2.8847 1.0903 36 1 5.3737 0.6576 2.7940 37 1 6.7942 1.5970 4.8829 38 1 7.7559 0.3719 4.0211 39 1 10.0589 0.8060 3.4054 40 1 12.1155 2.0646 3.8983 41 1 13.8164 8.0421 6.8161 42 1 9.8064 5.0088 5.9688 43 1 7.7542 3.7491 5.4606 44 1 3.5520 0.5802 -1.4117 45 1 3.6563 2.3553 -1.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881574418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:34 Heat of formation + Delta-G solvation = -64.237144 kcal Electronic energy + Delta-G solvation = -25226.246010 eV Core-core repulsion = 21403.396186 eV Total energy + Delta-G solvation = -3822.849825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29956 -39.56644 -38.81686 -36.85380 -36.44888 -34.18647 -32.46292 -31.56412 -30.17647 -28.68637 -27.09359 -26.41519 -26.06206 -24.80335 -22.90983 -22.03456 -21.03371 -20.28532 -19.63803 -17.83319 -17.38931 -17.12904 -16.66946 -16.17568 -15.96899 -15.72990 -15.38269 -14.84421 -14.68954 -14.20392 -13.98311 -13.90994 -13.69286 -13.58456 -13.35926 -13.14787 -12.86899 -12.62071 -12.49002 -12.28273 -12.15262 -11.98099 -11.56334 -11.28546 -11.21953 -11.09517 -10.86775 -10.70871 -10.62637 -10.60230 -10.10817 -9.99091 -9.65771 -9.32764 -9.08142 -8.80825 -8.17115 -7.24296 -6.36537 -4.02786 2.22109 2.22389 2.81756 3.16551 3.21415 3.26345 3.30404 3.44448 4.12977 4.17124 4.28459 4.32999 4.43293 4.54256 4.76950 4.89359 4.91375 4.93817 4.94454 5.04428 5.16565 5.17082 5.26357 5.28520 5.31119 5.38433 5.40772 5.53621 5.63523 5.68037 5.72341 5.76844 5.82016 5.94297 6.19468 6.39498 6.41640 6.63132 6.73237 6.86009 7.08722 7.28755 7.37006 7.50706 7.68283 7.86262 8.09615 8.36968 8.99016 9.62141 10.71239 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035323 B = 0.001849 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.491581 B =15139.020170 C =15280.607928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.060 3.940 4 H 0.074 0.926 5 C -0.155 4.155 6 C -0.115 4.115 7 H 0.100 0.900 8 C 0.128 3.872 9 N -0.739 5.739 10 C 0.508 3.492 11 O -0.522 6.522 12 C -0.082 4.082 13 C -0.160 4.160 14 C -0.062 4.062 15 C -0.191 4.191 16 C 0.161 3.839 17 O -0.219 6.219 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.059 4.059 28 C -0.131 4.131 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.279 0.721 42 H 0.133 0.867 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.029 -15.880 -11.207 30.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.002 3.998 4 H 0.092 0.908 5 C -0.193 4.193 6 C -0.134 4.134 7 H 0.118 0.882 8 C 0.005 3.995 9 N -0.393 5.393 10 C 0.294 3.706 11 O -0.396 6.396 12 C -0.122 4.122 13 C -0.161 4.161 14 C -0.081 4.081 15 C -0.210 4.210 16 C 0.109 3.891 17 O -0.124 6.124 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.238 4.238 27 C -0.077 4.077 28 C -0.169 4.169 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.150 0.850 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.137 -15.224 -11.620 30.036 hybrid contribution 0.127 -0.067 0.096 0.172 sum -23.010 -15.292 -11.525 29.935 Atomic orbital electron populations 1.22816 0.80800 1.02863 1.00089 1.87876 1.19800 1.26583 1.94615 1.23081 0.94543 0.85146 0.97035 0.90772 1.23623 0.96302 1.01521 0.97808 1.22774 0.93134 1.00526 0.96921 0.88219 1.21321 0.93988 0.98248 0.85986 1.46074 1.27382 1.41988 1.23843 1.21015 0.79833 0.82089 0.87656 1.90750 1.59258 1.29878 1.59715 1.20431 0.96745 1.00609 0.94404 1.18715 0.92711 0.98353 1.06365 1.20406 0.91495 0.98361 0.97804 1.20151 0.98574 0.96535 1.05757 1.19120 0.86220 0.91378 0.92334 1.83571 1.27946 1.31433 1.69432 1.20774 0.98007 0.91188 1.36412 0.87647 1.24459 0.99333 0.94284 0.95951 1.69647 1.31970 1.09481 1.40818 0.86180 0.81875 0.80158 0.78677 1.19909 1.20829 1.18376 1.21224 0.92054 1.03187 1.07382 1.20565 0.97142 0.93457 0.96526 1.23173 0.93940 1.03103 0.96688 0.93907 0.89519 0.93926 0.88952 0.90686 0.91543 0.91539 0.76843 0.88917 0.88929 0.87199 0.86558 0.91122 0.84975 0.87553 0.90215 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.85 101.05 1.10 1.25 16 2 O -0.37 -2.82 10.63 -35.23 -0.37 -3.19 16 3 C 0.06 0.38 4.36 -25.92 -0.11 0.27 16 4 H 0.07 0.38 7.88 -51.93 -0.41 -0.03 16 5 C -0.15 -0.97 7.48 -25.78 -0.19 -1.17 16 6 C -0.11 -0.78 3.69 -89.67 -0.33 -1.11 16 7 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 8 C 0.13 1.18 5.51 -4.04 -0.02 1.16 16 9 N -0.74 -7.14 5.56 -60.29 -0.33 -7.48 16 10 C 0.51 6.98 7.82 -10.98 -0.09 6.89 16 11 O -0.52 -9.91 16.03 5.56 0.09 -9.82 16 12 C -0.08 -1.01 5.83 -29.03 -0.17 -1.18 16 13 C -0.16 -2.77 4.38 -104.57 -0.46 -3.23 16 14 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 15 C -0.19 -4.00 9.99 -39.39 -0.39 -4.40 16 16 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 17 O -0.22 -5.99 8.59 0.03 0.00 -5.99 16 18 C -0.39 -11.27 9.95 30.88 0.31 -10.97 16 19 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 20 C 0.06 1.80 5.49 -17.52 -0.10 1.71 16 21 N -0.88 -25.97 13.96 55.48 0.77 -25.20 16 22 Si 0.91 22.24 28.62 -169.99 -4.86 17.37 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.26 -6.39 7.11 56.52 0.40 -5.98 16 26 C -0.22 -4.98 9.17 -39.40 -0.36 -5.34 16 27 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 28 C -0.13 -0.82 7.47 -25.92 -0.19 -1.02 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.56 7.90 -51.92 -0.41 0.15 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 36 H 0.40 2.65 8.47 -40.82 -0.35 2.30 16 37 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.13 3.13 5.64 -52.49 -0.30 2.83 16 43 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -34.53 379.67 -7.81 -42.33 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.78 Total: 2.74 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -2.04 Total: -16.50 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.44 Total: -32.68 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.29 Total: -19.00 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.86 Total: 17.37 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.53 -7.81 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881574418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.903 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds