Wall clock time and date at job start Tue Mar 31 2020 12:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00246 * 2 1 4 4 H 1.09002 * 112.84846 * 339.67091 * 3 2 1 5 5 C 1.53783 * 113.61167 * 110.86281 * 3 2 1 6 6 C 1.54043 * 86.98454 * 89.16495 * 5 3 2 7 7 H 1.08997 * 113.69225 * 270.86721 * 6 5 3 8 8 C 1.52998 * 113.62169 * 139.97642 * 6 5 3 9 9 N 1.46500 * 109.47331 * 87.50461 * 8 6 5 10 10 C 1.34778 * 120.00325 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99771 * 179.97438 * 10 9 8 13 13 C 1.50705 * 109.46610 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.92966 * 269.72534 * 13 12 10 15 15 C 1.38102 * 120.06553 * 179.73126 * 14 13 12 16 16 C 1.38881 * 119.92941 * 0.56482 * 15 14 13 17 17 O 1.35754 * 120.06844 * 179.68316 * 16 15 14 18 18 C 1.34834 * 117.00031 * 174.48773 * 17 16 15 19 19 H 1.07998 * 119.99849 * 5.06157 * 18 17 16 20 20 C 1.38647 * 119.99819 * 185.05788 * 18 17 16 21 21 N 1.31552 * 119.99962 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00315 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47191 * 89.99497 * 22 20 18 24 24 H 1.48505 * 109.47155 * 209.99670 * 22 20 18 25 25 H 1.48501 * 109.46753 * 329.99656 * 22 20 18 26 26 C 1.38880 * 119.86356 * 359.71076 * 16 15 14 27 27 C 1.38097 * 119.92841 * 359.97438 * 26 16 15 28 28 C 1.53776 * 87.08090 * 25.42959 * 6 5 3 29 29 H 1.09001 * 109.46646 * 299.99895 * 1 2 3 30 30 H 1.08994 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46893 * 59.99311 * 1 2 3 32 32 H 1.09007 * 113.61035 * 203.66475 * 5 3 2 33 33 H 1.08996 * 113.61393 * 334.56808 * 5 3 2 34 34 H 1.09003 * 109.47300 * 207.50462 * 8 6 5 35 35 H 1.09003 * 109.47329 * 327.50284 * 8 6 5 36 36 H 0.97006 * 119.99524 * 0.02562 * 9 8 6 37 37 H 1.09003 * 109.47297 * 299.99859 * 12 10 9 38 38 H 1.08996 * 109.47177 * 60.00026 * 12 10 9 39 39 H 1.07995 * 119.96904 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.03758 * 180.27645 * 15 14 13 41 41 H 0.97004 * 120.00629 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.03329 * 180.02562 * 26 16 15 43 43 H 1.08008 * 119.96448 * 180.02562 * 27 26 16 44 44 H 1.09002 * 113.62110 * 220.02267 * 28 6 5 45 45 H 1.09004 * 113.69269 * 89.12995 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3220 2.0752 -0.3490 5 6 2.7193 1.6640 1.3167 6 6 3.9895 1.0404 0.7079 7 1 4.0887 -0.0278 0.9009 8 6 5.2669 1.8218 1.0216 9 7 5.8215 1.3596 2.2964 10 6 6.9538 1.9098 2.7778 11 8 7.5133 2.7879 2.1559 12 6 7.5238 1.4347 4.0895 13 6 8.7822 2.2043 4.3984 14 6 10.0061 1.7285 3.9645 15 6 11.1604 2.4343 4.2412 16 6 11.0925 3.6170 4.9661 17 8 12.2261 4.3098 5.2452 18 6 12.0794 5.5050 5.8517 19 1 11.1002 5.8340 6.1669 20 6 13.1856 6.3116 6.0709 21 7 13.0426 7.4775 6.6631 22 14 14.8792 5.7427 5.5252 23 1 15.1310 6.2004 4.1352 24 1 15.9088 6.3156 6.4292 25 1 14.9440 4.2601 5.5777 26 6 9.8625 4.0892 5.4053 27 6 8.7111 3.3822 5.1197 28 6 3.3924 1.3644 -0.6716 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 2.8001 2.7370 1.4909 33 1 2.3358 1.1215 2.1808 34 1 5.9963 1.6595 0.2280 35 1 5.0352 2.8847 1.0903 36 1 5.3737 0.6576 2.7940 37 1 6.7942 1.5970 4.8829 38 1 7.7559 0.3719 4.0211 39 1 10.0589 0.8060 3.4054 40 1 12.1155 2.0646 3.8983 41 1 13.8164 8.0421 6.8161 42 1 9.8064 5.0088 5.9688 43 1 7.7542 3.7491 5.4606 44 1 3.5520 0.5802 -1.4117 45 1 3.6563 2.3553 -1.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881574418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:33 Heat of formation + Delta-G solvation = -87.852057 kcal Electronic energy + Delta-G solvation = -25227.270030 eV Core-core repulsion = 21403.396186 eV Total energy + Delta-G solvation = -3823.873844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.19428 -40.74645 -40.13431 -38.32734 -37.22984 -35.09755 -34.51818 -32.99308 -31.80275 -29.64086 -28.07948 -27.31766 -26.69319 -26.41512 -23.72643 -23.58682 -22.38667 -21.36292 -20.33418 -19.81173 -19.11127 -18.08068 -17.44882 -17.02403 -16.82401 -16.52502 -16.32620 -16.13652 -15.95644 -15.69666 -15.58329 -15.26994 -14.97171 -14.66089 -14.34426 -14.31349 -14.16938 -14.06611 -13.79867 -13.33206 -13.04335 -12.89842 -12.71868 -12.51685 -12.44775 -12.39478 -12.31726 -11.93252 -11.79476 -11.60642 -11.27834 -11.16692 -10.93962 -10.75257 -10.44007 -10.00079 -9.78332 -8.97430 -8.50430 -6.22970 0.59016 0.62653 1.29875 1.34818 1.51162 1.76840 2.27841 2.30144 2.74859 2.79533 3.06222 3.19036 3.60624 3.64914 3.81065 3.86938 3.92865 4.04523 4.16122 4.24906 4.31965 4.40928 4.48597 4.56922 4.58226 4.59004 4.69265 4.71859 4.81568 4.82595 4.83573 4.87876 4.91930 4.99374 5.10846 5.22794 5.26208 5.35213 5.38356 5.57011 5.58851 5.74630 5.80188 5.91518 6.25502 6.30810 6.67742 6.83783 7.40341 7.58589 8.61369 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.035323 B = 0.001849 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.491581 B =15139.020170 C =15280.607928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.059 3.941 4 H 0.086 0.914 5 C -0.151 4.151 6 C -0.106 4.106 7 H 0.104 0.896 8 C 0.130 3.870 9 N -0.718 5.718 10 C 0.508 3.492 11 O -0.584 6.584 12 C -0.080 4.080 13 C -0.137 4.137 14 C -0.060 4.060 15 C -0.194 4.194 16 C 0.117 3.883 17 O -0.246 6.246 18 C -0.401 4.401 19 H 0.079 0.921 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.239 4.239 27 C -0.065 4.065 28 C -0.132 4.132 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.417 0.583 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.285 0.715 42 H 0.106 0.894 43 H 0.133 0.867 44 H 0.076 0.924 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.964 -19.129 -12.297 34.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.001 3.999 4 H 0.103 0.897 5 C -0.188 4.188 6 C -0.125 4.125 7 H 0.122 0.878 8 C 0.006 3.994 9 N -0.371 5.371 10 C 0.296 3.704 11 O -0.463 6.463 12 C -0.119 4.119 13 C -0.138 4.138 14 C -0.078 4.078 15 C -0.213 4.213 16 C 0.068 3.932 17 O -0.154 6.154 18 C -0.477 4.477 19 H 0.096 0.904 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.187 1.187 26 C -0.258 4.258 27 C -0.084 4.084 28 C -0.170 4.170 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.254 0.746 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.151 0.849 44 H 0.095 0.905 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.156 -18.543 -12.707 33.737 hybrid contribution 0.358 0.717 0.325 0.865 sum -24.799 -17.826 -12.382 32.955 Atomic orbital electron populations 1.22969 0.79582 1.03739 1.00789 1.87839 1.21252 1.27245 1.94725 1.23120 0.94710 0.85172 0.96947 0.89654 1.23595 0.95737 1.01575 0.97920 1.22699 0.91991 1.00291 0.97480 0.87833 1.21330 0.94674 0.98101 0.85295 1.45892 1.26022 1.41422 1.23757 1.21183 0.80266 0.81308 0.87662 1.90754 1.61278 1.32757 1.61514 1.20562 0.94818 1.01927 0.94601 1.19330 0.94951 0.96971 1.02552 1.20956 0.90570 0.99339 0.96948 1.20512 1.00574 0.95417 1.04775 1.19683 0.86106 0.92832 0.94575 1.83509 1.29424 1.31120 1.71359 1.20714 0.97368 0.92509 1.37107 0.90365 1.25295 1.03136 0.94352 0.96130 1.69730 1.33334 1.10716 1.42660 0.85200 0.77357 0.79348 0.78667 1.19301 1.18856 1.18677 1.21257 0.93379 1.03121 1.08071 1.20917 0.96856 0.93964 0.96619 1.23207 0.94076 1.03376 0.96343 0.93276 0.88659 0.93155 0.88804 0.90448 0.92808 0.92634 0.74609 0.85554 0.84776 0.82904 0.85391 0.90561 0.87585 0.84931 0.90503 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 113.37 1.23 1.42 16 2 O -0.39 -5.14 10.63 -148.98 -1.58 -6.72 16 3 C 0.06 0.62 4.36 31.12 0.14 0.75 16 4 H 0.09 0.69 7.88 -2.39 -0.02 0.68 16 5 C -0.15 -1.52 7.48 31.21 0.23 -1.29 16 6 C -0.11 -1.19 3.69 -10.18 -0.04 -1.22 16 7 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 8 C 0.13 2.12 5.51 86.38 0.48 2.59 16 9 N -0.72 -11.30 5.56 -463.06 -2.57 -13.87 16 10 C 0.51 12.19 7.82 87.66 0.69 12.87 16 11 O -0.58 -21.16 16.03 -3.03 -0.05 -21.21 16 12 C -0.08 -1.54 5.83 29.10 0.17 -1.38 16 13 C -0.14 -4.29 4.38 -19.83 -0.09 -4.37 16 14 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 15 C -0.19 -7.97 9.99 22.39 0.22 -7.75 16 16 C 0.12 5.86 6.65 22.58 0.15 6.01 16 17 O -0.25 -14.15 8.59 -22.82 -0.20 -14.34 16 18 C -0.40 -24.76 9.95 67.92 0.68 -24.09 16 19 H 0.08 5.08 5.44 -2.91 -0.02 5.06 16 20 C 0.01 0.54 5.49 84.83 0.47 1.01 16 21 N -0.92 -56.87 13.96 21.61 0.30 -56.56 16 22 Si 0.97 47.17 28.62 68.60 1.96 49.13 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 26 C -0.24 -11.32 9.17 22.39 0.21 -11.11 16 27 C -0.07 -2.44 9.69 22.25 0.22 -2.22 16 28 C -0.13 -1.42 7.47 31.12 0.23 -1.18 16 29 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.09 0.94 7.90 -2.38 -0.02 0.92 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.06 7.85 -2.39 -0.02 1.04 16 36 H 0.42 3.59 8.47 -92.70 -0.79 2.80 16 37 H 0.13 1.73 8.09 -2.39 -0.02 1.71 16 38 H 0.13 1.63 8.08 -2.39 -0.02 1.61 16 39 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 42 H 0.11 5.48 5.64 -2.91 -0.02 5.47 16 43 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 0.97 8.10 -2.39 -0.02 0.95 16 Total: -1.00 -80.61 379.67 3.27 -77.35 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.21 Total: 17.97 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 5.19 Total: -31.73 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -2.27 Total: -70.44 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.83 Total: -42.28 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.96 Total: 49.13 kcal Total: -80.61 3.27 -77.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881574418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.506 kcal (2) G-P(sol) polarization free energy of solvation -80.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds