Wall clock time and date at job start Tue Mar 31 2020 12:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99579 * 2 1 4 4 H 1.09000 * 112.85065 * 18.80120 * 3 2 1 5 5 C 1.53776 * 113.61425 * 150.00521 * 3 2 1 6 6 C 1.53774 * 87.08367 * 89.11464 * 5 3 2 7 7 H 1.09000 * 113.61656 * 270.79801 * 6 5 3 8 8 C 1.52996 * 113.61682 * 139.98333 * 6 5 3 9 9 N 1.46498 * 109.47606 * 174.99778 * 8 6 5 10 10 C 1.34776 * 120.00163 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00215 * 0.02562 * 10 9 8 12 12 C 1.50708 * 119.99874 * 180.02562 * 10 9 8 13 13 C 1.50696 * 109.46856 * 180.02562 * 12 10 9 14 14 C 1.38325 * 119.96384 * 269.72284 * 13 12 10 15 15 C 1.38281 * 120.13571 * 179.77299 * 14 13 12 16 16 C 1.38127 * 120.06989 * 0.50603 * 15 14 13 17 17 C 1.38858 * 119.92793 * 359.74872 * 16 15 14 18 18 O 1.35748 * 120.06676 * 180.02562 * 17 16 15 19 19 C 1.34829 * 117.00027 * 354.44385 * 18 17 16 20 20 H 1.08001 * 120.00086 * 5.05585 * 19 18 17 21 21 C 1.38655 * 120.00205 * 185.05638 * 19 18 17 22 22 N 1.31565 * 119.99770 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00509 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46818 * 59.99426 * 23 21 19 25 25 H 1.48494 * 109.47409 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46715 * 300.00326 * 23 21 19 27 27 C 1.38080 * 119.96579 * 90.00226 * 13 12 10 28 28 C 1.53774 * 87.08377 * 25.43087 * 6 5 3 29 29 H 1.09011 * 109.46770 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47068 * 299.99840 * 1 2 3 31 31 H 1.08992 * 109.47635 * 60.00248 * 1 2 3 32 32 H 1.09001 * 113.61533 * 334.56371 * 5 3 2 33 33 H 1.08999 * 113.61659 * 203.66832 * 5 3 2 34 34 H 1.09006 * 109.47098 * 54.99772 * 8 6 5 35 35 H 1.09000 * 109.47416 * 295.00016 * 8 6 5 36 36 H 0.97002 * 119.99796 * 0.02562 * 9 8 6 37 37 H 1.08995 * 109.47084 * 300.00320 * 12 10 9 38 38 H 1.09003 * 109.46619 * 60.00310 * 12 10 9 39 39 H 1.07998 * 119.93163 * 0.02562 * 14 13 12 40 40 H 1.08003 * 119.96305 * 180.28198 * 15 14 13 41 41 H 1.07994 * 120.03259 * 179.77049 * 16 15 14 42 42 H 0.96996 * 119.99988 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.03575 * 359.95332 * 27 13 12 44 44 H 1.09003 * 113.61249 * 89.11561 * 28 6 5 45 45 H 1.09002 * 113.61763 * 220.02074 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0789 0.3237 5 6 3.3755 1.3720 0.7044 6 6 4.0060 1.0333 -0.6566 7 1 4.1098 -0.0369 -0.8355 8 6 5.2907 1.8114 -0.9476 9 7 5.8761 1.3356 -2.2034 10 6 7.0198 1.8808 -2.6631 11 8 7.5646 2.7651 -2.0368 12 6 7.6217 1.3917 -3.9553 13 6 8.8871 2.1581 -4.2418 14 6 8.8353 3.3251 -4.9826 15 6 9.9937 4.0338 -5.2436 16 6 11.2080 3.5724 -4.7739 17 6 11.2639 2.3984 -4.0344 18 8 12.4556 1.9427 -3.5709 19 6 13.5598 2.6119 -3.9593 20 1 13.4661 3.5158 -4.5429 21 6 14.8157 2.1396 -3.6096 22 7 14.9298 1.0387 -2.8983 23 14 16.3455 3.0663 -4.1482 24 1 16.3120 4.4427 -3.5918 25 1 17.5531 2.3598 -3.6506 26 1 16.3874 3.1328 -5.6311 27 6 10.0979 1.6917 -3.7694 28 6 2.7533 1.6489 -1.3018 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 3.5170 0.5959 1.4565 33 1 3.6310 2.3672 1.0685 34 1 6.0006 1.6579 -0.1347 35 1 5.0608 2.8734 -1.0334 36 1 5.4402 0.6286 -2.7046 37 1 7.8519 0.3298 -3.8698 38 1 6.9115 1.5453 -4.7678 39 1 7.8877 3.6858 -5.3544 40 1 9.9494 4.9470 -5.8184 41 1 12.1127 4.1243 -4.9812 42 1 15.8083 0.7085 -2.6533 43 1 10.1382 0.7785 -3.1943 44 1 2.8387 2.7198 -1.4863 45 1 2.3925 1.0964 -2.1694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881576071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:39 Heat of formation + Delta-G solvation = -65.356070 kcal Electronic energy + Delta-G solvation = -25314.328048 eV Core-core repulsion = 21491.429703 eV Total energy + Delta-G solvation = -3822.898345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.26876 -39.50674 -38.65156 -36.75465 -36.30931 -34.14634 -32.33241 -31.92236 -29.26327 -28.62844 -27.11532 -26.40626 -26.02660 -25.13772 -22.94085 -21.59726 -21.12380 -20.35739 -19.65367 -17.66668 -17.24596 -16.83866 -16.63280 -15.99393 -15.90009 -15.70288 -15.38939 -14.94285 -14.65308 -14.33093 -14.10542 -13.89674 -13.67356 -13.45317 -13.23717 -13.01723 -12.83663 -12.56475 -12.33102 -12.28249 -11.97975 -11.72010 -11.44263 -11.21685 -11.17850 -11.03624 -10.76359 -10.71118 -10.58088 -10.54172 -10.40390 -9.95513 -9.63450 -9.26301 -9.03029 -8.76127 -7.97753 -7.13455 -6.36872 -3.95872 2.18064 2.47792 2.86352 3.18028 3.18459 3.20150 3.21856 3.28079 4.03181 4.17072 4.21241 4.37696 4.46992 4.63605 4.79857 4.92009 4.96221 4.97954 5.02676 5.18137 5.19509 5.20769 5.30205 5.33295 5.41578 5.44055 5.56377 5.59367 5.69328 5.74743 5.81918 5.83963 5.98738 6.01622 6.25917 6.42228 6.46611 6.74441 6.76760 7.00387 7.14903 7.35387 7.44748 7.51834 7.55200 7.91624 8.08260 8.40852 9.08748 9.80414 10.81419 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029188 B = 0.001938 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.060428 B =14445.469683 C =14974.264145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.060 3.940 4 H 0.074 0.926 5 C -0.132 4.132 6 C -0.115 4.115 7 H 0.100 0.900 8 C 0.129 3.871 9 N -0.738 5.738 10 C 0.512 3.488 11 O -0.520 6.520 12 C -0.094 4.094 13 C -0.032 4.032 14 C -0.197 4.197 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.174 4.174 28 C -0.154 4.154 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.397 -0.910 2.304 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.002 3.998 4 H 0.092 0.908 5 C -0.170 4.170 6 C -0.134 4.134 7 H 0.119 0.881 8 C 0.005 3.995 9 N -0.392 5.392 10 C 0.299 3.701 11 O -0.394 6.394 12 C -0.134 4.134 13 C -0.033 4.033 14 C -0.216 4.216 15 C -0.094 4.094 16 C -0.251 4.251 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.194 4.194 28 C -0.192 4.192 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.110 0.890 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.612 -0.751 3.029 26.795 hybrid contribution 0.309 0.399 -0.509 0.717 sum -26.303 -0.352 2.520 26.426 Atomic orbital electron populations 1.22817 0.80840 1.02869 1.00036 1.87886 1.19762 1.26570 1.94598 1.23082 0.94507 0.85144 0.97065 0.90770 1.23190 0.93935 1.03067 0.96798 1.22729 0.93044 1.00645 0.96964 0.88149 1.21325 0.93623 0.98030 0.86534 1.46025 1.26323 1.41519 1.25313 1.20765 0.79948 0.82257 0.87172 1.90757 1.60396 1.29737 1.58557 1.20591 0.96391 1.01220 0.95191 1.18668 0.91885 0.95186 0.97555 1.20346 0.97359 0.97546 1.06331 1.20676 0.92371 0.98105 0.98200 1.21167 0.98410 0.99331 1.06145 1.19280 0.87384 0.91811 0.91412 1.83976 1.10909 1.51660 1.61833 1.21267 0.82115 1.08077 1.35242 0.89202 1.25271 0.98232 0.96452 0.96603 1.70037 1.24676 1.20408 1.34912 0.85790 0.79629 0.79032 0.79012 1.19558 1.20341 1.19561 1.19949 0.90245 1.02115 1.07062 1.23568 0.96285 1.01511 0.97798 0.89519 0.93942 0.93942 0.90170 0.88509 0.91413 0.91569 0.76784 0.88285 0.88463 0.87981 0.87514 0.85647 0.92090 0.86842 0.88999 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.85 101.05 1.10 1.25 16 2 O -0.37 -2.97 10.63 -35.23 -0.37 -3.35 16 3 C 0.06 0.40 4.38 -25.92 -0.11 0.29 16 4 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 5 C -0.13 -0.90 7.47 -25.93 -0.19 -1.09 16 6 C -0.12 -0.86 3.69 -89.82 -0.33 -1.19 16 7 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 8 C 0.13 1.28 5.51 -4.04 -0.02 1.26 16 9 N -0.74 -7.81 5.56 -60.29 -0.33 -8.15 16 10 C 0.51 7.64 7.82 -10.98 -0.09 7.55 16 11 O -0.52 -10.46 16.03 5.56 0.09 -10.37 16 12 C -0.09 -1.29 5.83 -29.03 -0.17 -1.46 16 13 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 14 C -0.20 -3.67 9.70 -39.53 -0.38 -4.05 16 15 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 16 C -0.23 -5.36 9.17 -39.39 -0.36 -5.72 16 17 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 18 O -0.18 -5.37 9.76 0.06 0.00 -5.37 16 19 C -0.39 -11.33 9.49 30.89 0.29 -11.03 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -26.06 13.67 55.48 0.76 -25.31 16 23 Si 0.94 21.13 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 C -0.17 -3.94 9.65 -39.39 -0.38 -4.32 16 28 C -0.15 -1.01 7.46 -25.92 -0.19 -1.21 16 29 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.58 8.10 -51.93 -0.42 0.15 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 36 H 0.40 2.99 8.47 -40.82 -0.35 2.65 16 37 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.11 2.49 8.06 -52.49 -0.42 2.07 16 44 H 0.09 0.57 7.90 -51.93 -0.41 0.16 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -35.96 380.75 -7.97 -43.92 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.76 Total: 4.76 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -2.06 Total: -17.99 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.42 Total: -33.45 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.28 Total: -19.09 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.96 -7.97 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881576071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.432 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds