Wall clock time and date at job start Tue Mar 31 2020 12:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99579 * 2 1 4 4 H 1.09000 * 112.85065 * 18.80120 * 3 2 1 5 5 C 1.53776 * 113.61425 * 150.00521 * 3 2 1 6 6 C 1.53774 * 87.08367 * 89.11464 * 5 3 2 7 7 H 1.09000 * 113.61656 * 270.79801 * 6 5 3 8 8 C 1.52996 * 113.61682 * 139.98333 * 6 5 3 9 9 N 1.46498 * 109.47606 * 174.99778 * 8 6 5 10 10 C 1.34776 * 120.00163 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00215 * 0.02562 * 10 9 8 12 12 C 1.50708 * 119.99874 * 180.02562 * 10 9 8 13 13 C 1.50696 * 109.46856 * 180.02562 * 12 10 9 14 14 C 1.38325 * 119.96384 * 269.72284 * 13 12 10 15 15 C 1.38281 * 120.13571 * 179.77299 * 14 13 12 16 16 C 1.38127 * 120.06989 * 0.50603 * 15 14 13 17 17 C 1.38858 * 119.92793 * 359.74872 * 16 15 14 18 18 O 1.35748 * 120.06676 * 180.02562 * 17 16 15 19 19 C 1.34829 * 117.00027 * 354.44385 * 18 17 16 20 20 H 1.08001 * 120.00086 * 5.05585 * 19 18 17 21 21 C 1.38655 * 120.00205 * 185.05638 * 19 18 17 22 22 N 1.31565 * 119.99770 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00509 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46818 * 59.99426 * 23 21 19 25 25 H 1.48494 * 109.47409 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46715 * 300.00326 * 23 21 19 27 27 C 1.38080 * 119.96579 * 90.00226 * 13 12 10 28 28 C 1.53774 * 87.08377 * 25.43087 * 6 5 3 29 29 H 1.09011 * 109.46770 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47068 * 299.99840 * 1 2 3 31 31 H 1.08992 * 109.47635 * 60.00248 * 1 2 3 32 32 H 1.09001 * 113.61533 * 334.56371 * 5 3 2 33 33 H 1.08999 * 113.61659 * 203.66832 * 5 3 2 34 34 H 1.09006 * 109.47098 * 54.99772 * 8 6 5 35 35 H 1.09000 * 109.47416 * 295.00016 * 8 6 5 36 36 H 0.97002 * 119.99796 * 0.02562 * 9 8 6 37 37 H 1.08995 * 109.47084 * 300.00320 * 12 10 9 38 38 H 1.09003 * 109.46619 * 60.00310 * 12 10 9 39 39 H 1.07998 * 119.93163 * 0.02562 * 14 13 12 40 40 H 1.08003 * 119.96305 * 180.28198 * 15 14 13 41 41 H 1.07994 * 120.03259 * 179.77049 * 16 15 14 42 42 H 0.96996 * 119.99988 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.03575 * 359.95332 * 27 13 12 44 44 H 1.09003 * 113.61249 * 89.11561 * 28 6 5 45 45 H 1.09002 * 113.61763 * 220.02074 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0789 0.3237 5 6 3.3755 1.3720 0.7044 6 6 4.0060 1.0333 -0.6566 7 1 4.1098 -0.0369 -0.8355 8 6 5.2907 1.8114 -0.9476 9 7 5.8761 1.3356 -2.2034 10 6 7.0198 1.8808 -2.6631 11 8 7.5646 2.7651 -2.0368 12 6 7.6217 1.3917 -3.9553 13 6 8.8871 2.1581 -4.2418 14 6 8.8353 3.3251 -4.9826 15 6 9.9937 4.0338 -5.2436 16 6 11.2080 3.5724 -4.7739 17 6 11.2639 2.3984 -4.0344 18 8 12.4556 1.9427 -3.5709 19 6 13.5598 2.6119 -3.9593 20 1 13.4661 3.5158 -4.5429 21 6 14.8157 2.1396 -3.6096 22 7 14.9298 1.0387 -2.8983 23 14 16.3455 3.0663 -4.1482 24 1 16.3120 4.4427 -3.5918 25 1 17.5531 2.3598 -3.6506 26 1 16.3874 3.1328 -5.6311 27 6 10.0979 1.6917 -3.7694 28 6 2.7533 1.6489 -1.3018 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 3.5170 0.5959 1.4565 33 1 3.6310 2.3672 1.0685 34 1 6.0006 1.6579 -0.1347 35 1 5.0608 2.8734 -1.0334 36 1 5.4402 0.6286 -2.7046 37 1 7.8519 0.3298 -3.8698 38 1 6.9115 1.5453 -4.7678 39 1 7.8877 3.6858 -5.3544 40 1 9.9494 4.9470 -5.8184 41 1 12.1127 4.1243 -4.9812 42 1 15.8083 0.7085 -2.6533 43 1 10.1382 0.7785 -3.1943 44 1 2.8387 2.7198 -1.4863 45 1 2.3925 1.0964 -2.1694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881576071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:38 Heat of formation + Delta-G solvation = -90.570812 kcal Electronic energy + Delta-G solvation = -25315.421441 eV Core-core repulsion = 21491.429703 eV Total energy + Delta-G solvation = -3823.991738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20216 -40.69160 -40.11013 -38.21260 -37.24780 -35.13774 -34.33449 -33.44603 -30.92668 -29.73417 -28.01782 -27.34028 -27.01810 -26.57050 -23.73451 -23.23306 -22.64379 -21.52218 -20.37905 -19.49397 -18.80914 -18.07290 -17.41002 -16.90515 -16.86609 -16.64259 -16.42249 -16.20627 -16.09647 -15.90143 -15.50507 -15.17257 -14.99648 -14.63202 -14.31858 -14.25657 -13.99224 -13.84498 -13.57622 -13.32716 -12.94881 -12.90249 -12.71329 -12.46070 -12.44295 -12.39122 -12.21052 -12.12344 -11.80882 -11.59971 -11.20276 -11.18479 -10.87110 -10.77072 -10.43713 -10.03873 -9.62458 -8.96974 -8.46230 -6.15060 0.53249 0.76825 1.34057 1.45665 1.51010 1.70751 2.18346 2.26689 2.75683 2.86265 3.19073 3.45273 3.60775 3.64330 3.80816 3.83634 3.92002 4.11368 4.18119 4.30644 4.33037 4.39761 4.45522 4.57106 4.58721 4.60067 4.66497 4.68820 4.74791 4.80952 4.82561 4.88104 4.91837 5.08062 5.11493 5.13523 5.22631 5.31484 5.34394 5.55410 5.66113 5.73740 5.76485 6.03352 6.24814 6.31896 6.62202 6.97943 7.34383 7.79783 8.77133 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029188 B = 0.001938 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.060428 B =14445.469683 C =14974.264145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.060 3.940 4 H 0.089 0.911 5 C -0.134 4.134 6 C -0.109 4.109 7 H 0.099 0.901 8 C 0.130 3.870 9 N -0.716 5.716 10 C 0.512 3.488 11 O -0.582 6.582 12 C -0.091 4.091 13 C -0.026 4.026 14 C -0.181 4.181 15 C -0.074 4.074 16 C -0.247 4.247 17 C 0.111 3.889 18 O -0.235 6.235 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.255 1.255 27 C -0.194 4.194 28 C -0.146 4.146 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.417 0.583 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.272 0.728 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.454 0.214 0.551 30.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.002 3.998 4 H 0.107 0.893 5 C -0.172 4.172 6 C -0.128 4.128 7 H 0.118 0.882 8 C 0.006 3.994 9 N -0.369 5.369 10 C 0.299 3.701 11 O -0.461 6.461 12 C -0.131 4.131 13 C -0.027 4.027 14 C -0.199 4.199 15 C -0.092 4.092 16 C -0.267 4.267 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.492 4.492 20 H 0.118 0.882 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.183 1.183 25 H -0.195 1.195 26 H -0.180 1.180 27 C -0.213 4.213 28 C -0.184 4.184 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -29.776 0.347 1.247 29.804 hybrid contribution 0.869 0.052 0.014 0.870 sum -28.907 0.399 1.260 28.937 Atomic orbital electron populations 1.22974 0.79529 1.03708 1.00864 1.87850 1.21328 1.27361 1.94717 1.23119 0.94581 0.85201 0.96934 0.89291 1.23238 0.94334 1.03322 0.96321 1.22663 0.92056 1.00209 0.97844 0.88244 1.21359 0.94190 0.98348 0.85489 1.45854 1.24906 1.40941 1.25236 1.20938 0.80428 0.81546 0.87139 1.90750 1.62290 1.32732 1.60329 1.20708 0.94691 1.01517 0.96151 1.19220 0.92508 0.95435 0.95496 1.20984 0.98768 0.96240 1.03905 1.21146 0.91258 0.99334 0.97450 1.21297 0.99920 0.98794 1.06648 1.19892 0.87128 0.93639 0.93282 1.83934 1.12300 1.53499 1.64476 1.21796 0.82777 1.08754 1.35827 0.88242 1.26633 1.01703 0.97475 0.96372 1.70192 1.25683 1.22848 1.37333 0.84625 0.74502 0.77688 0.79217 1.18339 1.19468 1.17962 1.20228 0.91089 1.02218 1.07801 1.23533 0.95208 1.01814 0.97834 0.88799 0.93111 0.93091 0.90839 0.87727 0.93406 0.91885 0.74570 0.86177 0.83744 0.83409 0.83624 0.86416 0.91863 0.87684 0.88342 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 113.37 1.23 1.44 16 2 O -0.39 -5.62 10.63 -148.98 -1.58 -7.20 16 3 C 0.06 0.67 4.38 31.12 0.14 0.81 16 4 H 0.09 0.73 7.87 -2.39 -0.02 0.71 16 5 C -0.13 -1.65 7.47 31.12 0.23 -1.42 16 6 C -0.11 -1.43 3.69 -10.27 -0.04 -1.47 16 7 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 8 C 0.13 2.41 5.51 86.38 0.48 2.89 16 9 N -0.72 -13.40 5.56 -463.06 -2.57 -15.97 16 10 C 0.51 14.16 7.82 87.66 0.69 14.84 16 11 O -0.58 -23.07 16.03 -3.03 -0.05 -23.11 16 12 C -0.09 -2.18 5.83 29.10 0.17 -2.01 16 13 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 14 C -0.18 -6.06 9.70 22.30 0.22 -5.85 16 15 C -0.07 -2.75 10.04 22.25 0.22 -2.53 16 16 C -0.25 -11.66 9.17 22.39 0.21 -11.45 16 17 C 0.11 5.96 6.65 22.58 0.15 6.11 16 18 O -0.24 -15.05 9.76 -22.71 -0.22 -15.28 16 19 C -0.42 -25.46 9.49 67.92 0.64 -24.81 16 20 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 21 C -0.02 -1.47 5.49 84.83 0.47 -1.00 16 22 N -0.92 -58.66 13.67 21.61 0.30 -58.37 16 23 Si 1.02 44.50 29.55 68.60 2.03 46.53 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 27 C -0.19 -9.01 9.65 22.39 0.22 -8.80 16 28 C -0.15 -1.55 7.46 31.12 0.23 -1.31 16 29 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.11 8.10 -2.39 -0.02 1.09 16 34 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.06 1.25 7.84 -2.39 -0.02 1.23 16 36 H 0.42 4.79 8.47 -92.71 -0.79 4.01 16 37 H 0.12 2.43 8.08 -2.39 -0.02 2.41 16 38 H 0.14 2.15 8.08 -2.39 -0.02 2.13 16 39 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 41 H 0.12 5.58 5.64 -2.91 -0.02 5.57 16 42 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 43 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 44 H 0.10 0.94 7.90 -2.39 -0.02 0.92 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -85.55 380.75 3.27 -82.29 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.21 Total: 26.70 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 5.16 Total: -35.58 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -2.28 Total: -74.34 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -1.85 Total: -45.59 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -85.55 3.27 -82.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881576071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.285 kcal (2) G-P(sol) polarization free energy of solvation -85.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds