Wall clock time and date at job start Tue Mar 31 2020 12:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 117.00047 * 2 1 4 4 O 1.21472 * 120.00302 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99804 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.15174 * 5.67122 * 5 3 2 7 7 C 1.37918 * 119.84781 * 180.31560 * 6 5 3 8 8 C 1.38389 * 120.15089 * 359.66867 * 7 6 5 9 9 C 1.38351 * 120.30296 * 359.97438 * 8 7 6 10 10 C 1.37962 * 120.14913 * 0.04936 * 9 8 7 11 11 C 1.50702 * 120.07872 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47106 * 98.63857 * 11 10 9 13 13 N 1.46502 * 109.47045 * 180.02562 * 12 11 10 14 14 C 1.34773 * 119.99912 * 180.02562 * 13 12 11 15 15 O 1.21287 * 120.00009 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00128 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47429 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47275 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.47120 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00384 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00446 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99539 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00560 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46774 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47325 * 119.99875 * 23 21 19 26 26 H 1.48501 * 109.47084 * 240.00106 * 23 21 19 27 27 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46707 * 300.00326 * 1 2 3 29 29 H 1.09001 * 109.47047 * 60.00205 * 1 2 3 30 30 H 1.07999 * 120.07403 * 359.97438 * 6 5 3 31 31 H 1.07995 * 119.92668 * 179.68147 * 7 6 5 32 32 H 1.07998 * 119.85112 * 180.02562 * 8 7 6 33 33 H 1.07996 * 119.92620 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47229 * 218.64549 * 11 10 9 35 35 H 1.09004 * 109.46629 * 338.64019 * 11 10 9 36 36 H 1.09000 * 109.47189 * 300.00721 * 12 11 10 37 37 H 1.09005 * 109.46780 * 60.00276 * 12 11 10 38 38 H 0.97003 * 120.00032 * 359.97438 * 13 12 11 39 39 H 1.09000 * 109.46612 * 299.99811 * 16 14 13 40 40 H 1.08995 * 109.46731 * 59.99861 * 16 14 13 41 41 H 1.09000 * 109.46829 * 300.00261 * 17 16 14 42 42 H 1.09005 * 109.46971 * 59.99713 * 17 16 14 43 43 H 1.08999 * 109.47197 * 299.99456 * 18 17 16 44 44 H 1.08996 * 109.47204 * 60.00170 * 18 17 16 45 45 H 0.96991 * 119.99750 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3022 0.1142 -0.1204 7 6 5.6791 0.1930 -0.1137 8 6 6.3045 1.4218 0.0046 9 6 5.5544 2.5789 0.1163 10 6 4.1763 2.5146 0.1114 11 6 3.3608 3.7760 0.2338 12 6 2.9013 4.2229 -1.1555 13 7 2.1090 5.4495 -1.0366 14 6 1.5955 6.0296 -2.1394 15 8 1.7897 5.5364 -3.2303 16 6 0.7801 7.2910 -2.0171 17 6 0.3196 7.7373 -3.4062 18 6 -0.5088 9.0176 -3.2819 19 6 -0.9619 9.4575 -4.6501 20 1 -0.6869 8.8813 -5.5213 21 6 -1.7275 10.5956 -4.7901 22 7 -2.0629 11.2970 -3.7293 23 14 -2.2897 11.1406 -6.4860 24 1 -1.7837 10.1867 -7.5054 25 1 -3.7737 11.1712 -6.5295 26 1 -1.7581 12.4975 -6.7715 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.8154 -0.8454 -0.2127 31 1 6.2706 -0.7064 -0.2011 32 1 7.3830 1.4779 0.0089 33 1 6.0488 3.5347 0.2079 34 1 2.4899 3.5862 0.8611 35 1 3.9695 4.5597 0.6848 36 1 3.7723 4.4127 -1.7827 37 1 2.2926 3.4391 -1.6064 38 1 1.9535 5.8438 -0.1640 39 1 -0.0907 7.1012 -1.3896 40 1 1.3889 8.0748 -1.5664 41 1 1.1902 7.9269 -4.0340 42 1 -0.2893 6.9532 -3.8564 43 1 -1.3794 8.8275 -2.6542 44 1 0.0997 9.8018 -2.8315 45 1 -2.6018 12.0974 -3.8276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886294303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:25 Heat of formation + Delta-G solvation = -115.376091 kcal Electronic energy + Delta-G solvation = -25615.101177 eV Core-core repulsion = 21790.033801 eV Total energy + Delta-G solvation = -3825.067376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12746 -39.44874 -39.11739 -36.88829 -35.34398 -34.07307 -32.82834 -31.97693 -31.91750 -29.23828 -28.06994 -27.42269 -24.68546 -24.05702 -23.06342 -21.99582 -21.00526 -20.49848 -19.60994 -18.29514 -17.31784 -16.79523 -16.69931 -16.26924 -15.98920 -15.88791 -15.60129 -15.23849 -14.98856 -14.37692 -14.28306 -13.90749 -13.71620 -13.52805 -13.28115 -12.99417 -12.93570 -12.49056 -12.21808 -12.19028 -11.99511 -11.75964 -11.65732 -11.50178 -11.23073 -11.02930 -10.76960 -10.52322 -10.47340 -10.41096 -9.60171 -9.58374 -9.50739 -9.29512 -9.16272 -8.93040 -8.81984 -8.27575 -5.93165 -3.94082 0.26601 0.85219 2.18961 2.32875 3.08535 3.24866 3.36781 3.43694 3.47895 3.50807 4.22565 4.35746 4.41694 4.53224 4.55046 4.79492 4.80250 4.89434 4.90075 4.95826 5.08012 5.19110 5.26170 5.34549 5.42821 5.42899 5.55409 5.72576 5.79069 5.81349 5.83189 5.86748 5.95063 6.07560 6.20434 6.36301 6.37794 6.64227 6.81712 7.02147 7.24322 7.41728 7.75427 7.78924 7.90651 8.08379 8.52643 8.61656 9.13361 9.69513 11.18451 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.002088 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.507599 B =13406.391643 C =14139.458906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.501 3.499 4 O -0.486 6.486 5 C -0.125 4.125 6 C -0.060 4.060 7 C -0.138 4.138 8 C -0.080 4.080 9 C -0.127 4.127 10 C -0.012 4.012 11 C -0.103 4.103 12 C 0.137 3.863 13 N -0.735 5.735 14 C 0.512 3.488 15 O -0.541 6.541 16 C -0.138 4.138 17 C -0.095 4.095 18 C 0.020 3.980 19 C -0.515 4.515 20 H 0.056 0.944 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.892 3.108 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.284 1.284 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.759 -25.960 15.288 34.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.346 3.654 4 O -0.375 6.375 5 C -0.126 4.126 6 C -0.078 4.078 7 C -0.156 4.156 8 C -0.098 4.098 9 C -0.145 4.145 10 C -0.013 4.013 11 C -0.141 4.141 12 C 0.013 3.987 13 N -0.388 5.388 14 C 0.300 3.700 15 O -0.418 6.418 16 C -0.178 4.178 17 C -0.133 4.133 18 C -0.018 4.018 19 C -0.554 4.554 20 H 0.075 0.925 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.232 0.768 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.558 -25.878 14.523 33.505 hybrid contribution -0.592 0.517 -0.382 0.874 sum 14.966 -25.361 14.141 32.667 Atomic orbital electron populations 1.23311 0.75549 1.03814 1.03000 1.86511 1.23860 1.32672 1.84420 1.21218 0.89116 0.81653 0.73440 1.90869 1.66834 1.35176 1.44609 1.18978 0.89173 0.94602 1.09860 1.21463 0.93997 0.97792 0.94576 1.21178 0.94320 0.98301 1.01757 1.21469 1.00502 0.92365 0.95494 1.21098 0.92481 0.99335 1.01570 1.19824 0.93876 0.93333 0.94301 1.21067 1.00434 0.93727 0.98826 1.21063 0.95111 0.87256 0.95281 1.46021 1.55256 1.27502 1.10024 1.21221 0.79054 0.86126 0.83593 1.90665 1.59216 1.64978 1.26915 1.21830 0.99393 0.93713 1.02848 1.21434 1.00102 0.99661 0.92065 1.19141 0.94482 0.90984 0.97145 1.21327 1.31675 1.08937 0.93423 0.92540 1.25034 0.96286 0.96660 0.96666 1.69978 1.38305 1.17017 1.28499 0.86535 0.78313 0.78466 0.84715 1.19697 1.21073 1.21070 0.87965 0.91692 0.91484 0.84408 0.85060 0.85143 0.84746 0.87785 0.90497 0.92327 0.91251 0.76795 0.89437 0.89449 0.92755 0.92778 0.96606 0.96603 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.36 -3.33 9.83 -40.51 -0.40 -3.73 16 3 C 0.50 5.40 7.76 34.61 0.27 5.67 16 4 O -0.49 -6.28 11.38 -19.24 -0.22 -6.50 16 5 C -0.12 -1.17 5.87 -104.98 -0.62 -1.79 16 6 C -0.06 -0.44 9.62 -39.17 -0.38 -0.81 16 7 C -0.14 -0.80 10.03 -39.64 -0.40 -1.19 16 8 C -0.08 -0.46 10.04 -39.48 -0.40 -0.86 16 9 C -0.13 -0.89 9.66 -39.64 -0.38 -1.28 16 10 C -0.01 -0.11 5.17 -104.21 -0.54 -0.65 16 11 C -0.10 -0.98 4.72 -27.88 -0.13 -1.11 16 12 C 0.14 1.76 5.18 -4.04 -0.02 1.73 16 13 N -0.74 -9.99 5.56 -60.29 -0.33 -10.32 16 14 C 0.51 9.11 7.83 -10.99 -0.09 9.03 16 15 O -0.54 -11.87 15.98 5.55 0.09 -11.78 16 16 C -0.14 -2.46 5.70 -27.88 -0.16 -2.62 16 17 C -0.09 -2.16 4.44 -26.74 -0.12 -2.28 16 18 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 19 C -0.52 -15.33 9.11 -34.44 -0.31 -15.64 16 20 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 21 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 23 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.14 0.80 7.63 -52.49 -0.40 0.40 16 31 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 32 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 33 H 0.13 0.72 8.04 -52.49 -0.42 0.30 16 34 H 0.10 1.08 5.96 -51.93 -0.31 0.77 16 35 H 0.08 0.58 8.02 -51.93 -0.42 0.16 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.06 6.57 -51.93 -0.34 0.72 16 38 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 42 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -36.67 381.21 -8.69 -45.36 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.85 Total: -0.77 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.44 Total: -8.56 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.40 Total: -37.22 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.53 Total: -22.01 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.67 -8.69 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886294303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.016 kcal (2) G-P(sol) polarization free energy of solvation -36.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds