Wall clock time and date at job start Tue Mar 31 2020 12:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 117.00047 * 2 1 4 4 O 1.21472 * 120.00302 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99804 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.15174 * 5.67122 * 5 3 2 7 7 C 1.37918 * 119.84781 * 180.31560 * 6 5 3 8 8 C 1.38389 * 120.15089 * 359.66867 * 7 6 5 9 9 C 1.38351 * 120.30296 * 359.97438 * 8 7 6 10 10 C 1.37962 * 120.14913 * 0.04936 * 9 8 7 11 11 C 1.50702 * 120.07872 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47106 * 98.63857 * 11 10 9 13 13 N 1.46502 * 109.47045 * 180.02562 * 12 11 10 14 14 C 1.34773 * 119.99912 * 180.02562 * 13 12 11 15 15 O 1.21287 * 120.00009 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00128 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47429 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47275 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.47120 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00384 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00446 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99539 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00560 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46774 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47325 * 119.99875 * 23 21 19 26 26 H 1.48501 * 109.47084 * 240.00106 * 23 21 19 27 27 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46707 * 300.00326 * 1 2 3 29 29 H 1.09001 * 109.47047 * 60.00205 * 1 2 3 30 30 H 1.07999 * 120.07403 * 359.97438 * 6 5 3 31 31 H 1.07995 * 119.92668 * 179.68147 * 7 6 5 32 32 H 1.07998 * 119.85112 * 180.02562 * 8 7 6 33 33 H 1.07996 * 119.92620 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47229 * 218.64549 * 11 10 9 35 35 H 1.09004 * 109.46629 * 338.64019 * 11 10 9 36 36 H 1.09000 * 109.47189 * 300.00721 * 12 11 10 37 37 H 1.09005 * 109.46780 * 60.00276 * 12 11 10 38 38 H 0.97003 * 120.00032 * 359.97438 * 13 12 11 39 39 H 1.09000 * 109.46612 * 299.99811 * 16 14 13 40 40 H 1.08995 * 109.46731 * 59.99861 * 16 14 13 41 41 H 1.09000 * 109.46829 * 300.00261 * 17 16 14 42 42 H 1.09005 * 109.46971 * 59.99713 * 17 16 14 43 43 H 1.08999 * 109.47197 * 299.99456 * 18 17 16 44 44 H 1.08996 * 109.47204 * 60.00170 * 18 17 16 45 45 H 0.96991 * 119.99750 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3022 0.1142 -0.1204 7 6 5.6791 0.1930 -0.1137 8 6 6.3045 1.4218 0.0046 9 6 5.5544 2.5789 0.1163 10 6 4.1763 2.5146 0.1114 11 6 3.3608 3.7760 0.2338 12 6 2.9013 4.2229 -1.1555 13 7 2.1090 5.4495 -1.0366 14 6 1.5955 6.0296 -2.1394 15 8 1.7897 5.5364 -3.2303 16 6 0.7801 7.2910 -2.0171 17 6 0.3196 7.7373 -3.4062 18 6 -0.5088 9.0176 -3.2819 19 6 -0.9619 9.4575 -4.6501 20 1 -0.6869 8.8813 -5.5213 21 6 -1.7275 10.5956 -4.7901 22 7 -2.0629 11.2970 -3.7293 23 14 -2.2897 11.1406 -6.4860 24 1 -1.7837 10.1867 -7.5054 25 1 -3.7737 11.1712 -6.5295 26 1 -1.7581 12.4975 -6.7715 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.8154 -0.8454 -0.2127 31 1 6.2706 -0.7064 -0.2011 32 1 7.3830 1.4779 0.0089 33 1 6.0488 3.5347 0.2079 34 1 2.4899 3.5862 0.8611 35 1 3.9695 4.5597 0.6848 36 1 3.7723 4.4127 -1.7827 37 1 2.2926 3.4391 -1.6064 38 1 1.9535 5.8438 -0.1640 39 1 -0.0907 7.1012 -1.3896 40 1 1.3889 8.0748 -1.5664 41 1 1.1902 7.9269 -4.0340 42 1 -0.2893 6.9532 -3.8564 43 1 -1.3794 8.8275 -2.6542 44 1 0.0997 9.8018 -2.8315 45 1 -2.6018 12.0974 -3.8276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886294303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:24 Heat of formation + Delta-G solvation = -138.354052 kcal Electronic energy + Delta-G solvation = -25616.097576 eV Core-core repulsion = 21790.033801 eV Total energy + Delta-G solvation = -3826.063775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84940 -40.72480 -39.86127 -37.66895 -36.52677 -36.01461 -34.09219 -33.59164 -32.52402 -30.42198 -29.18558 -28.50772 -26.06229 -25.04463 -24.20850 -22.70798 -22.27545 -21.72256 -21.10047 -18.96677 -18.62120 -18.05921 -17.72874 -17.53797 -17.02815 -16.96553 -16.52971 -16.45867 -16.33002 -15.58674 -15.38655 -14.95330 -14.64679 -14.47945 -14.25356 -14.19035 -14.09640 -13.74624 -13.68459 -13.14494 -13.09003 -12.84400 -12.68544 -12.66135 -12.53218 -12.46800 -12.38263 -12.06437 -11.80184 -11.57253 -11.48431 -11.26758 -11.18338 -10.78403 -10.55412 -10.07646 -10.04202 -9.81206 -8.20992 -6.30956 -0.33652 0.33284 1.38616 1.38818 1.49339 1.53042 1.65360 1.67503 2.21984 2.41620 2.75907 3.11603 3.62463 3.70854 3.85630 3.91961 4.04460 4.12070 4.20675 4.24993 4.26328 4.27371 4.28864 4.43096 4.44863 4.52263 4.66565 4.76490 4.82646 4.90055 4.96114 4.97592 5.06044 5.09750 5.17903 5.30467 5.30809 5.44147 5.47410 5.53529 5.54886 5.74396 5.85910 5.89265 6.26863 6.56550 6.66066 6.84261 7.27888 7.37513 8.90827 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.002088 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.507599 B =13406.391643 C =14139.458906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.496 3.504 4 O -0.518 6.518 5 C -0.149 4.149 6 C -0.065 4.065 7 C -0.134 4.134 8 C -0.076 4.076 9 C -0.131 4.131 10 C -0.032 4.032 11 C -0.091 4.091 12 C 0.141 3.859 13 N -0.714 5.714 14 C 0.513 3.487 15 O -0.590 6.590 16 C -0.129 4.129 17 C -0.082 4.082 18 C 0.026 3.974 19 C -0.547 4.547 20 H 0.050 0.950 21 C 0.001 3.999 22 N -0.929 5.929 23 Si 0.964 3.036 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.274 1.274 27 H 0.134 0.866 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.416 0.584 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.000 1.000 44 H 0.003 0.997 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.438 -26.777 15.916 35.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.276 6.276 3 C 0.342 3.658 4 O -0.409 6.409 5 C -0.150 4.150 6 C -0.084 4.084 7 C -0.151 4.151 8 C -0.094 4.094 9 C -0.149 4.149 10 C -0.033 4.033 11 C -0.128 4.128 12 C 0.017 3.983 13 N -0.367 5.367 14 C 0.301 3.699 15 O -0.470 6.470 16 C -0.169 4.169 17 C -0.120 4.120 18 C -0.011 4.011 19 C -0.585 4.585 20 H 0.068 0.932 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.788 3.212 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.199 1.199 27 H 0.152 0.848 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.170 0.830 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.253 0.747 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.249 -26.716 15.211 35.251 hybrid contribution -1.078 0.693 -0.528 1.386 sum 16.171 -26.023 14.683 33.975 Atomic orbital electron populations 1.23517 0.74593 1.05720 1.02303 1.86509 1.24878 1.32097 1.84075 1.21659 0.89942 0.81551 0.72612 1.90839 1.67627 1.36080 1.46335 1.19117 0.88442 0.95797 1.11612 1.21668 0.94835 0.97496 0.94353 1.21562 0.93788 0.99610 1.00171 1.21874 1.02011 0.91756 0.93729 1.21371 0.91677 1.00827 1.00986 1.19886 0.94794 0.92759 0.95888 1.20916 1.00577 0.94974 0.96299 1.21060 0.94046 0.85763 0.97426 1.45831 1.53818 1.27216 1.09789 1.21126 0.78964 0.86001 0.83772 1.90649 1.61223 1.66264 1.28863 1.21674 1.00601 0.94604 0.99975 1.21159 0.98620 0.97258 0.94993 1.19022 0.94125 0.92325 0.95642 1.21710 1.32641 1.09680 0.94451 0.93174 1.25935 0.96085 0.96530 1.01089 1.70076 1.38632 1.17452 1.30760 0.85419 0.78142 0.78231 0.79383 1.19316 1.20010 1.19902 0.84760 0.91760 0.92833 0.83469 0.82224 0.82174 0.83035 0.88863 0.88065 0.92758 0.94067 0.74727 0.87658 0.86990 0.94011 0.94463 0.98127 0.97849 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.36 -6.81 9.83 -56.18 -0.55 -7.36 16 3 C 0.50 11.12 7.76 70.33 0.55 11.66 16 4 O -0.52 -14.09 11.38 19.93 0.23 -13.87 16 5 C -0.15 -2.76 5.87 -20.10 -0.12 -2.88 16 6 C -0.07 -0.87 9.62 22.53 0.22 -0.65 16 7 C -0.13 -1.18 10.03 22.23 0.22 -0.95 16 8 C -0.08 -0.64 10.04 22.33 0.22 -0.42 16 9 C -0.13 -1.56 9.66 22.23 0.21 -1.34 16 10 C -0.03 -0.56 5.17 -19.60 -0.10 -0.66 16 11 C -0.09 -1.67 4.72 29.85 0.14 -1.53 16 12 C 0.14 3.64 5.18 86.38 0.45 4.09 16 13 N -0.71 -19.07 5.56 -463.05 -2.57 -21.64 16 14 C 0.51 18.33 7.83 87.66 0.69 19.01 16 15 O -0.59 -26.58 15.98 -3.05 -0.05 -26.63 16 16 C -0.13 -4.54 5.70 29.85 0.17 -4.37 16 17 C -0.08 -3.84 4.44 30.59 0.14 -3.70 16 18 C 0.03 1.43 4.97 29.85 0.15 1.58 16 19 C -0.55 -33.14 9.11 25.60 0.23 -32.90 16 20 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 21 C 0.00 0.09 5.46 84.65 0.46 0.55 16 22 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 23 Si 0.96 46.21 29.54 68.60 2.03 48.23 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 27 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.15 1.55 7.63 -2.91 -0.02 1.53 16 31 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 32 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.15 1.20 8.04 -2.91 -0.02 1.18 16 34 H 0.09 1.95 5.96 -2.39 -0.01 1.93 16 35 H 0.10 1.32 8.02 -2.38 -0.02 1.30 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 1.33 6.57 -2.38 -0.02 1.31 16 38 H 0.42 8.19 8.47 -92.71 -0.79 7.41 16 39 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.11 3.41 8.14 -2.39 -0.02 3.40 16 41 H 0.04 2.02 8.10 -2.39 -0.02 2.00 16 42 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.26 15.24 8.31 -92.72 -0.77 14.47 16 Total: -1.00 -81.52 381.21 4.40 -77.12 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.21 Total: 12.12 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.83 Total: -10.85 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.29 Total: -78.77 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.37 Total: -47.86 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -81.52 4.40 -77.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886294303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.235 kcal (2) G-P(sol) polarization free energy of solvation -81.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds