Wall clock time and date at job start Tue Mar 31 2020 12:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00027 * 2 1 4 4 O 1.20821 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00055 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.53856 * 298.84280 * 5 3 2 7 7 C 1.54890 * 110.48635 * 61.45102 * 5 3 2 8 8 C 1.54882 * 102.91607 * 156.53078 * 7 5 3 9 9 C 1.54472 * 104.10157 * 322.30013 * 8 7 5 10 10 H 1.08998 * 109.86143 * 264.10577 * 9 8 7 11 11 N 1.46898 * 110.16101 * 142.74811 * 9 8 7 12 12 C 1.46894 * 110.99718 * 87.65508 * 11 9 8 13 13 C 1.50710 * 109.47139 * 179.97438 * 12 11 9 14 14 C 1.38298 * 119.92965 * 269.72527 * 13 12 11 15 15 C 1.38104 * 120.06571 * 179.72291 * 14 13 12 16 16 C 1.38879 * 119.92761 * 0.54577 * 15 14 13 17 17 O 1.35757 * 120.06427 * 179.74891 * 16 15 14 18 18 C 1.34834 * 116.99625 * 174.44788 * 17 16 15 19 19 H 1.08001 * 119.99934 * 5.05743 * 18 17 16 20 20 C 1.38654 * 119.99910 * 185.05533 * 18 17 16 21 21 N 1.31558 * 120.00095 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99941 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46998 * 89.99774 * 22 20 18 24 24 H 1.48493 * 109.47373 * 210.00010 * 22 20 18 25 25 H 1.48500 * 109.46880 * 330.00202 * 22 20 18 26 26 C 1.38875 * 119.86700 * 359.73201 * 16 15 14 27 27 C 1.38105 * 119.92970 * 359.97438 * 26 16 15 28 28 C 1.53879 * 106.67996 * 23.34448 * 9 8 7 29 29 H 1.09004 * 109.47507 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47538 * 300.00186 * 1 2 3 31 31 H 1.09001 * 109.47383 * 60.00146 * 1 2 3 32 32 H 1.09005 * 110.75494 * 274.94242 * 7 5 3 33 33 H 1.09001 * 110.75404 * 38.12099 * 7 5 3 34 34 H 1.08994 * 110.48947 * 80.82842 * 8 7 5 35 35 H 1.09003 * 110.48689 * 203.47504 * 8 7 5 36 36 H 1.00906 * 110.99578 * 211.60662 * 11 9 8 37 37 H 1.08997 * 109.47456 * 299.99766 * 12 11 9 38 38 H 1.09000 * 109.47422 * 60.00141 * 12 11 9 39 39 H 1.07996 * 119.96942 * 0.02562 * 14 13 12 40 40 H 1.07999 * 120.03394 * 180.27690 * 15 14 13 41 41 H 0.96993 * 119.99970 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.04158 * 180.02562 * 26 16 15 43 43 H 1.07997 * 119.96800 * 180.02562 * 27 26 16 44 44 H 1.09002 * 110.03138 * 240.87173 * 28 9 8 45 45 H 1.09004 * 110.03185 * 119.44270 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9736 0.8033 0.8949 7 6 4.1445 0.6105 -1.2736 8 6 5.5293 1.2886 -1.4196 9 6 5.2783 2.7523 -0.9944 10 1 5.0988 3.3683 -1.8755 11 7 6.4334 3.2676 -0.2473 12 6 7.4356 3.8394 -1.1564 13 6 8.6027 4.3572 -0.3557 14 6 8.6065 5.6659 0.0913 15 6 9.6720 6.1416 0.8301 16 6 10.7454 5.3076 1.1144 17 8 11.7965 5.7738 1.8360 18 6 12.7501 4.8826 2.1744 19 1 12.6986 3.8697 1.8033 20 6 13.7968 5.2667 2.9986 21 7 14.7269 4.3970 3.3291 22 14 13.8862 7.0189 3.6398 23 1 13.1620 7.1103 4.9330 24 1 15.3071 7.4009 3.8401 25 1 13.2603 7.9385 2.6560 26 6 10.7412 3.9955 0.6592 27 6 9.6701 3.5240 -0.0740 28 6 4.0301 2.7430 -0.0946 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 4.2538 -0.4649 -1.1328 33 1 3.5168 0.8234 -2.1389 34 1 6.2557 0.8194 -0.7562 35 1 5.8698 1.2417 -2.4540 36 1 6.1445 3.9437 0.4438 37 1 7.7810 3.0699 -1.8467 38 1 6.9897 4.6592 -1.7196 39 1 7.7733 6.3152 -0.1334 40 1 9.6723 7.1625 1.1827 41 1 15.4589 4.6656 3.9060 42 1 11.5743 3.3444 0.8790 43 1 9.6660 2.5036 -0.4279 44 1 3.2448 3.3545 -0.5390 45 1 4.2816 3.1201 0.8967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886545690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:29 Heat of formation + Delta-G solvation = -94.202646 kcal Electronic energy + Delta-G solvation = -25484.136467 eV Core-core repulsion = 21659.987241 eV Total energy + Delta-G solvation = -3824.149226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00384 -39.28038 -38.60281 -37.01899 -36.64486 -34.38096 -32.38265 -30.39750 -30.19678 -29.46503 -28.30948 -27.03764 -25.42538 -23.67698 -22.87466 -22.07234 -20.72277 -20.39390 -19.87855 -18.13379 -17.87700 -17.25611 -17.10811 -16.74879 -15.92508 -15.49786 -15.12719 -14.77373 -14.27217 -14.17838 -14.02841 -13.91227 -13.77326 -13.54889 -13.36724 -12.86309 -12.62865 -12.55302 -12.35943 -12.17767 -11.89074 -11.86016 -11.55058 -11.45617 -11.20637 -11.20280 -11.12547 -10.96306 -10.73428 -10.67439 -10.63628 -10.62279 -10.14335 -9.38134 -8.86885 -8.41475 -8.24299 -7.32163 -6.41507 -4.08086 1.85288 2.13717 2.18612 2.35037 3.21948 3.25762 3.40188 4.05111 4.15251 4.18119 4.23683 4.43747 4.62248 4.70534 4.77633 4.85843 4.89637 5.02283 5.10855 5.10919 5.13392 5.18028 5.21088 5.31700 5.33014 5.52527 5.52958 5.66653 5.71425 5.72977 5.83765 5.87668 5.88824 6.03090 6.10190 6.15016 6.35160 6.57501 6.80064 6.98459 7.10514 7.23607 7.33642 7.38735 7.43581 7.62026 7.80776 8.04104 8.93777 9.56230 10.66106 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027211 B = 0.001949 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.742755 B =14359.253531 C =14380.258317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.508 6.508 5 C -0.083 4.083 6 H 0.118 0.882 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.081 3.919 10 H 0.048 0.952 11 N -0.678 5.678 12 C 0.116 3.884 13 C -0.176 4.176 14 C -0.071 4.071 15 C -0.194 4.194 16 C 0.161 3.839 17 O -0.218 6.218 18 C -0.389 4.389 19 H 0.107 0.893 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.222 4.222 27 C -0.050 4.050 28 C -0.115 4.115 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.343 0.657 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.279 0.721 42 H 0.132 0.868 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.457 -7.705 -9.258 27.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.396 6.396 5 C -0.102 4.102 6 H 0.136 0.864 7 C -0.148 4.148 8 C -0.152 4.152 9 C -0.029 4.029 10 H 0.066 0.934 11 N -0.310 5.310 12 C -0.012 4.012 13 C -0.178 4.178 14 C -0.090 4.090 15 C -0.213 4.213 16 C 0.109 3.891 17 O -0.123 6.123 18 C -0.465 4.465 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.242 4.242 27 C -0.069 4.069 28 C -0.153 4.153 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.162 0.838 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.150 0.850 43 H 0.128 0.872 44 H 0.102 0.898 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.106 -7.825 -9.016 26.900 hybrid contribution -0.455 1.421 0.189 1.504 sum -24.561 -6.405 -8.827 26.873 Atomic orbital electron populations 1.23276 0.76439 1.03727 1.02546 1.86526 1.23349 1.33525 1.84003 1.23839 0.92158 0.81202 0.71743 1.90658 1.67175 1.36411 1.45318 1.21885 0.86253 0.99539 1.02573 0.86435 1.22462 0.96786 1.00362 0.95145 1.22495 0.96366 0.94576 1.01788 1.22199 0.89249 0.96349 0.95070 0.93353 1.60742 1.11844 1.42269 1.16163 1.20688 0.90536 0.96743 0.93221 1.19189 0.97095 0.94439 1.07034 1.20485 0.96861 0.94745 0.96921 1.20165 0.94310 1.00002 1.06803 1.19141 0.87174 0.92048 0.90763 1.83573 1.28161 1.38033 1.62538 1.20774 1.01305 0.94019 1.30369 0.87587 1.24470 0.94435 0.99527 0.95593 1.69645 1.12166 1.34730 1.35169 0.86181 0.77292 0.83549 0.79873 1.19892 1.20798 1.18408 1.21291 1.01196 0.96668 1.05001 1.20627 0.92426 0.98014 0.95832 1.22368 0.97472 0.94001 1.01487 0.88047 0.91895 0.91933 0.90044 0.91278 0.89518 0.91405 0.83780 0.91019 0.95346 0.87332 0.86662 0.91061 0.84989 0.87192 0.89839 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.08 10.54 -39.24 -0.41 -3.49 16 3 C 0.47 4.54 7.25 36.01 0.26 4.80 16 4 O -0.51 -6.27 15.21 -18.75 -0.29 -6.55 16 5 C -0.08 -0.68 3.37 -90.11 -0.30 -0.98 16 6 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.11 -0.78 6.29 -24.74 -0.16 -0.94 16 8 C -0.11 -0.94 6.52 -24.97 -0.16 -1.10 16 9 C 0.08 0.75 3.24 -66.48 -0.22 0.53 16 10 H 0.05 0.45 7.81 -51.93 -0.41 0.04 16 11 N -0.68 -7.60 6.26 -106.69 -0.67 -8.26 16 12 C 0.12 1.43 5.64 -4.97 -0.03 1.41 16 13 C -0.18 -2.79 5.40 -104.57 -0.56 -3.36 16 14 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 15 C -0.19 -3.78 9.99 -39.39 -0.39 -4.18 16 16 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 17 O -0.22 -5.75 8.59 0.02 0.00 -5.75 16 18 C -0.39 -10.95 9.95 30.89 0.31 -10.64 16 19 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 20 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 21 N -0.88 -25.35 13.96 55.48 0.77 -24.58 16 22 Si 0.91 21.67 28.62 -169.99 -4.86 16.81 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.26 -6.25 7.11 56.52 0.40 -5.84 16 26 C -0.22 -4.75 9.17 -39.39 -0.36 -5.11 16 27 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 28 C -0.12 -1.03 5.84 -25.62 -0.15 -1.18 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.48 8.05 -51.93 -0.42 0.07 16 34 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.34 3.85 8.00 -39.29 -0.31 3.53 16 37 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.03 0.33 8.01 -51.93 -0.42 -0.09 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.13 2.98 5.64 -52.49 -0.30 2.68 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 44 H 0.08 0.82 6.91 -51.93 -0.36 0.46 16 45 H 0.08 0.73 7.47 -51.93 -0.39 0.35 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -30.88 374.01 -8.30 -39.18 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.66 Total: 4.22 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.82 Total: -17.20 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.11 Total: -32.84 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.70 Total: -15.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.88 -8.30 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886545690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.025 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds