Wall clock time and date at job start Tue Mar 31 2020 12:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00027 * 2 1 4 4 O 1.20821 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00055 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.53856 * 298.84280 * 5 3 2 7 7 C 1.54890 * 110.48635 * 61.45102 * 5 3 2 8 8 C 1.54882 * 102.91607 * 156.53078 * 7 5 3 9 9 C 1.54472 * 104.10157 * 322.30013 * 8 7 5 10 10 H 1.08998 * 109.86143 * 264.10577 * 9 8 7 11 11 N 1.46898 * 110.16101 * 142.74811 * 9 8 7 12 12 C 1.46894 * 110.99718 * 87.65508 * 11 9 8 13 13 C 1.50710 * 109.47139 * 179.97438 * 12 11 9 14 14 C 1.38298 * 119.92965 * 269.72527 * 13 12 11 15 15 C 1.38104 * 120.06571 * 179.72291 * 14 13 12 16 16 C 1.38879 * 119.92761 * 0.54577 * 15 14 13 17 17 O 1.35757 * 120.06427 * 179.74891 * 16 15 14 18 18 C 1.34834 * 116.99625 * 174.44788 * 17 16 15 19 19 H 1.08001 * 119.99934 * 5.05743 * 18 17 16 20 20 C 1.38654 * 119.99910 * 185.05533 * 18 17 16 21 21 N 1.31558 * 120.00095 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99941 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46998 * 89.99774 * 22 20 18 24 24 H 1.48493 * 109.47373 * 210.00010 * 22 20 18 25 25 H 1.48500 * 109.46880 * 330.00202 * 22 20 18 26 26 C 1.38875 * 119.86700 * 359.73201 * 16 15 14 27 27 C 1.38105 * 119.92970 * 359.97438 * 26 16 15 28 28 C 1.53879 * 106.67996 * 23.34448 * 9 8 7 29 29 H 1.09004 * 109.47507 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47538 * 300.00186 * 1 2 3 31 31 H 1.09001 * 109.47383 * 60.00146 * 1 2 3 32 32 H 1.09005 * 110.75494 * 274.94242 * 7 5 3 33 33 H 1.09001 * 110.75404 * 38.12099 * 7 5 3 34 34 H 1.08994 * 110.48947 * 80.82842 * 8 7 5 35 35 H 1.09003 * 110.48689 * 203.47504 * 8 7 5 36 36 H 1.00906 * 110.99578 * 211.60662 * 11 9 8 37 37 H 1.08997 * 109.47456 * 299.99766 * 12 11 9 38 38 H 1.09000 * 109.47422 * 60.00141 * 12 11 9 39 39 H 1.07996 * 119.96942 * 0.02562 * 14 13 12 40 40 H 1.07999 * 120.03394 * 180.27690 * 15 14 13 41 41 H 0.96993 * 119.99970 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.04158 * 180.02562 * 26 16 15 43 43 H 1.07997 * 119.96800 * 180.02562 * 27 26 16 44 44 H 1.09002 * 110.03138 * 240.87173 * 28 9 8 45 45 H 1.09004 * 110.03185 * 119.44270 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9736 0.8033 0.8949 7 6 4.1445 0.6105 -1.2736 8 6 5.5293 1.2886 -1.4196 9 6 5.2783 2.7523 -0.9944 10 1 5.0988 3.3683 -1.8755 11 7 6.4334 3.2676 -0.2473 12 6 7.4356 3.8394 -1.1564 13 6 8.6027 4.3572 -0.3557 14 6 8.6065 5.6659 0.0913 15 6 9.6720 6.1416 0.8301 16 6 10.7454 5.3076 1.1144 17 8 11.7965 5.7738 1.8360 18 6 12.7501 4.8826 2.1744 19 1 12.6986 3.8697 1.8033 20 6 13.7968 5.2667 2.9986 21 7 14.7269 4.3970 3.3291 22 14 13.8862 7.0189 3.6398 23 1 13.1620 7.1103 4.9330 24 1 15.3071 7.4009 3.8401 25 1 13.2603 7.9385 2.6560 26 6 10.7412 3.9955 0.6592 27 6 9.6701 3.5240 -0.0740 28 6 4.0301 2.7430 -0.0946 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 4.2538 -0.4649 -1.1328 33 1 3.5168 0.8234 -2.1389 34 1 6.2557 0.8194 -0.7562 35 1 5.8698 1.2417 -2.4540 36 1 6.1445 3.9437 0.4438 37 1 7.7810 3.0699 -1.8467 38 1 6.9897 4.6592 -1.7196 39 1 7.7733 6.3152 -0.1334 40 1 9.6723 7.1625 1.1827 41 1 15.4589 4.6656 3.9060 42 1 11.5743 3.3444 0.8790 43 1 9.6660 2.5036 -0.4279 44 1 3.2448 3.3545 -0.5390 45 1 4.2816 3.1201 0.8967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886545690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:28 Heat of formation + Delta-G solvation = -112.580118 kcal Electronic energy + Delta-G solvation = -25484.933374 eV Core-core repulsion = 21659.987241 eV Total energy + Delta-G solvation = -3824.946133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.71938 -40.88409 -39.46523 -38.43928 -37.47427 -35.40357 -34.40048 -31.82080 -31.51175 -30.15868 -29.09284 -27.96089 -27.12527 -24.92651 -23.69194 -23.50441 -21.89405 -21.33640 -20.62955 -19.78660 -19.07810 -18.81882 -17.79325 -17.42522 -16.85777 -16.68397 -16.45312 -15.86849 -15.66123 -15.61174 -15.49667 -14.96641 -14.83208 -14.55710 -14.30964 -14.28519 -14.08688 -14.03650 -13.28075 -13.21466 -13.08258 -12.91213 -12.62389 -12.45322 -12.38111 -12.19686 -12.03849 -12.02273 -11.86893 -11.78480 -11.72169 -11.61198 -11.37216 -11.24753 -10.88839 -9.76931 -9.29574 -8.94869 -8.48864 -6.21253 0.60531 0.65571 1.12336 1.31724 1.35879 1.52244 1.74526 2.28706 2.75149 3.03208 3.17183 3.39997 3.50741 3.54238 3.82945 4.06920 4.10096 4.20457 4.25162 4.30832 4.32623 4.40544 4.45845 4.48862 4.53124 4.58965 4.62105 4.70506 4.72910 4.80094 4.90915 4.96303 5.02046 5.12279 5.14378 5.24505 5.29232 5.37347 5.40681 5.45123 5.59934 5.78623 5.85609 5.93548 6.20022 6.30111 6.53896 6.68525 6.85575 7.60576 8.62762 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027211 B = 0.001949 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.742755 B =14359.253531 C =14380.258317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.469 3.531 4 O -0.540 6.540 5 C -0.083 4.083 6 H 0.127 0.873 7 C -0.102 4.102 8 C -0.111 4.111 9 C 0.085 3.915 10 H 0.054 0.946 11 N -0.685 5.685 12 C 0.120 3.880 13 C -0.148 4.148 14 C -0.063 4.063 15 C -0.193 4.193 16 C 0.118 3.882 17 O -0.247 6.247 18 C -0.398 4.398 19 H 0.081 0.919 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.263 1.263 26 C -0.239 4.239 27 C -0.053 4.053 28 C -0.112 4.112 29 H 0.131 0.869 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.344 0.656 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.284 0.716 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.073 0.927 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.361 -7.465 -10.660 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.314 3.686 4 O -0.430 6.430 5 C -0.102 4.102 6 H 0.145 0.855 7 C -0.140 4.140 8 C -0.150 4.150 9 C -0.024 4.024 10 H 0.072 0.928 11 N -0.318 5.318 12 C -0.008 4.008 13 C -0.149 4.149 14 C -0.081 4.081 15 C -0.212 4.212 16 C 0.069 3.931 17 O -0.155 6.155 18 C -0.475 4.475 19 H 0.098 0.902 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.794 3.206 23 H -0.191 1.191 24 H -0.192 1.192 25 H -0.188 1.188 26 C -0.258 4.258 27 C -0.072 4.072 28 C -0.149 4.149 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.163 0.837 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.150 0.850 44 H 0.092 0.908 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.055 -7.615 -10.447 29.985 hybrid contribution 0.081 1.198 0.420 1.272 sum -26.974 -6.417 -10.027 29.484 Atomic orbital electron populations 1.23540 0.75051 1.05670 1.02399 1.86519 1.24783 1.32884 1.83543 1.24116 0.92686 0.81026 0.70784 1.90645 1.67956 1.37417 1.46966 1.21936 0.85369 0.99298 1.03596 0.85535 1.22433 0.96031 1.00915 0.94591 1.22466 0.96645 0.93800 1.02045 1.22213 0.88384 0.96902 0.94939 0.92757 1.60697 1.12589 1.42205 1.16278 1.20681 0.89410 0.97823 0.92879 1.19681 0.97064 0.93818 1.04319 1.20957 0.96696 0.95452 0.94984 1.20499 0.93878 1.00202 1.06671 1.19704 0.87868 0.93543 0.91954 1.83514 1.29223 1.37722 1.65015 1.20705 1.02415 0.93619 1.30725 0.90194 1.25288 0.94071 1.03665 0.95942 1.69730 1.13213 1.36678 1.36799 0.85207 0.77932 0.78385 0.79110 1.19120 1.19201 1.18774 1.21292 1.01900 0.96211 1.06426 1.20893 0.91787 0.99471 0.95005 1.22289 0.97063 0.94386 1.01210 0.85117 0.92198 0.91985 0.88842 0.90979 0.90444 0.90505 0.83692 0.90002 0.93335 0.83103 0.85565 0.90611 0.87669 0.84998 0.90802 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.57 10.54 -51.35 -0.54 -6.11 16 3 C 0.47 8.40 7.25 71.24 0.52 8.92 16 4 O -0.54 -12.82 15.21 21.98 0.33 -12.48 16 5 C -0.08 -1.17 3.37 -10.47 -0.04 -1.20 16 6 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 7 C -0.10 -1.16 6.29 31.88 0.20 -0.96 16 8 C -0.11 -1.47 6.52 31.74 0.21 -1.27 16 9 C 0.09 1.28 3.24 45.71 0.15 1.43 16 10 H 0.05 0.79 7.81 -2.39 -0.02 0.77 16 11 N -0.69 -12.87 6.26 -491.47 -3.08 -15.95 16 12 C 0.12 2.43 5.64 85.56 0.48 2.92 16 13 C -0.15 -4.19 5.40 -19.83 -0.11 -4.29 16 14 C -0.06 -1.83 9.69 22.25 0.22 -1.61 16 15 C -0.19 -7.29 9.99 22.39 0.22 -7.07 16 16 C 0.12 5.55 6.65 22.58 0.15 5.70 16 17 O -0.25 -13.57 8.59 -22.86 -0.20 -13.77 16 18 C -0.40 -23.73 9.95 67.92 0.68 -23.06 16 19 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 20 C 0.01 0.50 5.49 84.83 0.47 0.97 16 21 N -0.92 -55.58 13.96 21.61 0.30 -55.28 16 22 Si 0.97 45.85 28.62 68.60 1.96 47.81 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 26 C -0.24 -10.55 9.17 22.39 0.21 -10.34 16 27 C -0.05 -1.81 9.69 22.25 0.22 -1.60 16 28 C -0.11 -1.73 5.84 31.32 0.18 -1.55 16 29 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 31 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 0.81 8.05 -2.39 -0.02 0.79 16 34 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.34 6.47 8.00 -89.69 -0.72 5.75 16 37 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 38 H 0.05 0.85 8.01 -2.39 -0.02 0.83 16 39 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.11 5.15 5.64 -2.91 -0.02 5.14 16 43 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.07 1.32 6.91 -2.39 -0.02 1.30 16 45 H 0.08 1.26 7.47 -2.39 -0.02 1.24 16 Total: -1.00 -70.48 374.01 4.01 -66.47 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.28 Total: 20.84 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 4.94 Total: -31.54 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -2.78 Total: -71.23 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.40 Total: -32.36 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.96 Total: 47.81 kcal Total: -70.48 4.01 -66.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886545690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.107 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds