Wall clock time and date at job start Tue Mar 31 2020 12:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99935 * 2 1 4 4 O 1.20823 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99594 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.01797 * 59.93937 * 5 3 2 7 7 C 1.54266 * 110.03152 * 298.54540 * 5 3 2 8 8 C 1.54888 * 104.19729 * 217.06096 * 7 5 3 9 9 C 1.54885 * 102.74772 * 37.94491 * 8 7 5 10 10 H 1.08994 * 110.48754 * 80.74053 * 9 8 7 11 11 N 1.46901 * 110.48521 * 203.38192 * 9 8 7 12 12 C 1.46898 * 110.99870 * 273.54370 * 11 9 8 13 13 C 1.50705 * 109.47057 * 180.02562 * 12 11 9 14 14 C 1.38300 * 119.92876 * 269.72408 * 13 12 11 15 15 C 1.38102 * 120.06839 * 179.72508 * 14 13 12 16 16 C 1.38884 * 119.92864 * 0.57532 * 15 14 13 17 17 O 1.35749 * 120.06913 * 179.68291 * 16 15 14 18 18 C 1.34826 * 117.00039 * 174.48545 * 17 16 15 19 19 H 1.08008 * 120.00084 * 5.06078 * 18 17 16 20 20 C 1.38657 * 120.00073 * 185.05618 * 18 17 16 21 21 N 1.31550 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99887 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47160 * 60.00017 * 22 20 18 24 24 H 1.48493 * 109.47068 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47172 * 300.00044 * 22 20 18 26 26 C 1.38878 * 119.85849 * 359.70022 * 16 15 14 27 27 C 1.38099 * 119.93713 * 0.02562 * 26 16 15 28 28 C 1.53877 * 110.06659 * 181.36017 * 5 3 2 29 29 H 1.08995 * 109.47472 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46481 * 299.99412 * 1 2 3 31 31 H 1.09000 * 109.47642 * 59.99054 * 1 2 3 32 32 H 1.08997 * 110.48474 * 98.38103 * 7 5 3 33 33 H 1.08998 * 110.60323 * 335.79663 * 7 5 3 34 34 H 1.09001 * 110.75549 * 279.62763 * 8 7 5 35 35 H 1.08998 * 110.91708 * 156.33371 * 8 7 5 36 36 H 1.00896 * 111.00298 * 37.49591 * 11 9 8 37 37 H 1.08999 * 109.47357 * 299.99830 * 12 11 9 38 38 H 1.09006 * 109.47269 * 60.00258 * 12 11 9 39 39 H 1.08005 * 119.97017 * 359.97438 * 14 13 12 40 40 H 1.07995 * 120.03811 * 180.27562 * 15 14 13 41 41 H 0.96995 * 119.99823 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.02995 * 180.02562 * 26 16 15 43 43 H 1.07993 * 119.97041 * 179.97438 * 27 26 16 44 44 H 1.08997 * 110.03609 * 0.02562 * 28 5 3 45 45 H 1.09007 * 110.02665 * 238.58602 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9654 0.7822 -0.8872 7 6 4.1308 0.6106 1.2722 8 6 5.3422 1.4955 1.6573 9 6 4.8413 2.9233 1.3263 10 1 4.2113 3.3026 2.1308 11 7 5.9771 3.8252 1.0924 12 6 6.4606 4.4010 2.3543 13 6 7.6227 5.3190 2.0748 14 6 8.9128 4.8208 2.0819 15 6 9.9794 5.6582 1.8206 16 6 9.7563 7.0045 1.5624 17 8 10.8032 7.8315 1.3115 18 6 10.5106 9.0989 0.9566 19 1 9.4853 9.4382 0.9621 20 6 11.5261 9.9667 0.5847 21 7 12.7750 9.5536 0.5786 22 14 11.1208 11.7228 0.0937 23 1 10.4564 12.4133 1.2283 24 1 12.3726 12.4399 -0.2582 25 1 10.2109 11.7113 -1.0799 26 6 8.4600 7.5028 1.5616 27 6 7.3972 6.6591 1.8181 28 6 4.0181 2.7454 0.0338 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 4.4549 -0.4081 1.0592 33 1 3.3869 0.6144 2.0690 34 1 6.2133 1.2420 1.0532 35 1 5.5701 1.4026 2.7191 36 1 6.7209 3.3505 0.6031 37 1 5.6574 4.9660 2.8272 38 1 6.7820 3.5998 3.0198 39 1 9.0861 3.7748 2.2880 40 1 10.9863 5.2677 1.8219 41 1 13.4853 10.1605 0.3180 42 1 8.2834 8.5491 1.3607 43 1 6.3890 7.0461 1.8180 44 1 3.1488 3.4027 0.0514 45 1 4.6365 2.9664 -0.8362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886545693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:42 Heat of formation + Delta-G solvation = -96.539936 kcal Electronic energy + Delta-G solvation = -25464.221376 eV Core-core repulsion = 21639.970797 eV Total energy + Delta-G solvation = -3824.250579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.03510 -39.14365 -38.56474 -36.91878 -36.56364 -34.33214 -32.26896 -30.28535 -30.09558 -29.31498 -28.29838 -26.93338 -25.43349 -23.75378 -22.67882 -21.95346 -21.03074 -20.45769 -19.81295 -18.12287 -17.95733 -17.07743 -16.94858 -16.80974 -15.93911 -15.56870 -14.75881 -14.58488 -14.35884 -14.31112 -14.01192 -13.73972 -13.56023 -13.41047 -13.16416 -12.90616 -12.65679 -12.59802 -12.51845 -12.09086 -11.84906 -11.74132 -11.58133 -11.41838 -11.21221 -11.18529 -11.15854 -10.83248 -10.74610 -10.66893 -10.60950 -10.47131 -10.42301 -9.31154 -8.81515 -8.30745 -8.14221 -7.16324 -6.43411 -4.02134 1.86913 2.24305 2.30415 2.36071 3.14768 3.16005 3.18592 3.96365 3.98787 4.19774 4.36127 4.38814 4.69645 4.71168 4.78319 4.93231 4.96653 5.07316 5.10375 5.12067 5.15252 5.24077 5.28630 5.32904 5.41951 5.46597 5.55410 5.66733 5.77876 5.81855 5.85044 5.92187 5.95990 6.00582 6.16783 6.23631 6.45674 6.72427 6.93335 7.04370 7.15336 7.23660 7.40490 7.42367 7.46000 7.51370 7.85445 8.01823 9.02332 9.72459 10.74550 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028137 B = 0.001943 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.882928 B =14403.707096 C =15031.845635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.503 6.503 5 C -0.086 4.086 6 H 0.111 0.889 7 C -0.106 4.106 8 C -0.157 4.157 9 C 0.085 3.915 10 H 0.083 0.917 11 N -0.677 5.677 12 C 0.119 3.881 13 C -0.185 4.185 14 C -0.069 4.069 15 C -0.194 4.194 16 C 0.156 3.844 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.235 4.235 27 C -0.049 4.049 28 C -0.112 4.112 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.343 0.657 37 H 0.069 0.931 38 H 0.028 0.972 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.589 -19.328 0.593 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.390 6.390 5 C -0.106 4.106 6 H 0.129 0.871 7 C -0.144 4.144 8 C -0.196 4.196 9 C -0.026 4.026 10 H 0.101 0.899 11 N -0.307 5.307 12 C -0.009 4.009 13 C -0.187 4.187 14 C -0.088 4.088 15 C -0.214 4.214 16 C 0.102 3.898 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.255 4.255 27 C -0.068 4.068 28 C -0.150 4.150 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.163 0.837 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.730 -18.392 0.397 26.976 hybrid contribution -0.042 0.149 0.067 0.169 sum -19.772 -18.243 0.464 26.906 Atomic orbital electron populations 1.23275 0.76428 1.03675 1.02620 1.86519 1.23372 1.33576 1.84137 1.23847 0.92292 0.81200 0.71871 1.90661 1.66987 1.36309 1.45015 1.21755 0.86650 1.00162 1.02027 0.87072 1.22211 0.97709 0.99296 0.95231 1.23299 0.97814 0.96546 1.01948 1.22433 0.93181 0.90022 0.96956 0.89866 1.60569 1.10770 1.36963 1.22381 1.20633 0.95191 0.95404 0.89695 1.19117 0.93125 0.94380 1.12045 1.20471 0.91832 0.97820 0.98629 1.20165 0.99011 0.91407 1.10774 1.19401 0.87712 0.90450 0.92277 1.83972 1.28681 1.21417 1.74090 1.21285 0.95042 0.84294 1.46169 0.89099 1.25283 0.94554 1.00041 0.96624 1.70026 0.99163 1.36334 1.44300 0.85787 0.78066 0.80344 0.79275 1.19513 1.20300 1.19479 1.21171 0.92410 1.00861 1.11029 1.20583 0.97491 0.92653 0.96039 1.22258 1.01147 0.92397 0.99214 0.88102 0.91884 0.91874 0.90307 0.91154 0.90674 0.91025 0.83740 0.91250 0.95349 0.87519 0.86663 0.91998 0.85627 0.87483 0.89018 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.05 10.53 -39.27 -0.41 -3.47 16 3 C 0.47 4.54 7.11 36.01 0.26 4.80 16 4 O -0.50 -6.38 14.96 -18.75 -0.28 -6.66 16 5 C -0.09 -0.68 3.41 -90.65 -0.31 -0.99 16 6 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 7 C -0.11 -0.72 6.32 -25.07 -0.16 -0.88 16 8 C -0.16 -1.19 6.41 -24.74 -0.16 -1.35 16 9 C 0.08 0.82 3.16 -66.05 -0.21 0.61 16 10 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 11 N -0.68 -8.03 6.26 -106.24 -0.67 -8.69 16 12 C 0.12 1.55 5.66 -4.97 -0.03 1.52 16 13 C -0.19 -3.09 5.40 -104.57 -0.56 -3.66 16 14 C -0.07 -1.19 9.69 -39.61 -0.38 -1.58 16 15 C -0.19 -4.08 9.99 -39.39 -0.39 -4.47 16 16 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 17 O -0.18 -5.12 9.76 0.06 0.00 -5.12 16 18 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 19 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 22 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 26 C -0.24 -5.17 9.17 -39.40 -0.36 -5.53 16 27 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 28 C -0.11 -1.07 6.14 -25.61 -0.16 -1.23 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.50 7.85 -51.93 -0.41 0.09 16 34 H 0.07 0.55 7.82 -51.93 -0.41 0.15 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.34 3.96 8.29 -39.29 -0.33 3.64 16 37 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 38 H 0.03 0.34 8.06 -51.93 -0.42 -0.08 16 39 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.09 1.06 6.40 -51.93 -0.33 0.73 16 45 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -32.12 374.92 -8.46 -40.59 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.64 Total: 5.72 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.85 Total: -19.01 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.09 Total: -33.34 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.69 Total: -15.25 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.12 -8.46 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886545693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.953 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds