Wall clock time and date at job start Tue Mar 31 2020 12:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99935 * 2 1 4 4 O 1.20823 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99594 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.01797 * 59.93937 * 5 3 2 7 7 C 1.54266 * 110.03152 * 298.54540 * 5 3 2 8 8 C 1.54888 * 104.19729 * 217.06096 * 7 5 3 9 9 C 1.54885 * 102.74772 * 37.94491 * 8 7 5 10 10 H 1.08994 * 110.48754 * 80.74053 * 9 8 7 11 11 N 1.46901 * 110.48521 * 203.38192 * 9 8 7 12 12 C 1.46898 * 110.99870 * 273.54370 * 11 9 8 13 13 C 1.50705 * 109.47057 * 180.02562 * 12 11 9 14 14 C 1.38300 * 119.92876 * 269.72408 * 13 12 11 15 15 C 1.38102 * 120.06839 * 179.72508 * 14 13 12 16 16 C 1.38884 * 119.92864 * 0.57532 * 15 14 13 17 17 O 1.35749 * 120.06913 * 179.68291 * 16 15 14 18 18 C 1.34826 * 117.00039 * 174.48545 * 17 16 15 19 19 H 1.08008 * 120.00084 * 5.06078 * 18 17 16 20 20 C 1.38657 * 120.00073 * 185.05618 * 18 17 16 21 21 N 1.31550 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99887 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47160 * 60.00017 * 22 20 18 24 24 H 1.48493 * 109.47068 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47172 * 300.00044 * 22 20 18 26 26 C 1.38878 * 119.85849 * 359.70022 * 16 15 14 27 27 C 1.38099 * 119.93713 * 0.02562 * 26 16 15 28 28 C 1.53877 * 110.06659 * 181.36017 * 5 3 2 29 29 H 1.08995 * 109.47472 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46481 * 299.99412 * 1 2 3 31 31 H 1.09000 * 109.47642 * 59.99054 * 1 2 3 32 32 H 1.08997 * 110.48474 * 98.38103 * 7 5 3 33 33 H 1.08998 * 110.60323 * 335.79663 * 7 5 3 34 34 H 1.09001 * 110.75549 * 279.62763 * 8 7 5 35 35 H 1.08998 * 110.91708 * 156.33371 * 8 7 5 36 36 H 1.00896 * 111.00298 * 37.49591 * 11 9 8 37 37 H 1.08999 * 109.47357 * 299.99830 * 12 11 9 38 38 H 1.09006 * 109.47269 * 60.00258 * 12 11 9 39 39 H 1.08005 * 119.97017 * 359.97438 * 14 13 12 40 40 H 1.07995 * 120.03811 * 180.27562 * 15 14 13 41 41 H 0.96995 * 119.99823 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.02995 * 180.02562 * 26 16 15 43 43 H 1.07993 * 119.97041 * 179.97438 * 27 26 16 44 44 H 1.08997 * 110.03609 * 0.02562 * 28 5 3 45 45 H 1.09007 * 110.02665 * 238.58602 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9654 0.7822 -0.8872 7 6 4.1308 0.6106 1.2722 8 6 5.3422 1.4955 1.6573 9 6 4.8413 2.9233 1.3263 10 1 4.2113 3.3026 2.1308 11 7 5.9771 3.8252 1.0924 12 6 6.4606 4.4010 2.3543 13 6 7.6227 5.3190 2.0748 14 6 8.9128 4.8208 2.0819 15 6 9.9794 5.6582 1.8206 16 6 9.7563 7.0045 1.5624 17 8 10.8032 7.8315 1.3115 18 6 10.5106 9.0989 0.9566 19 1 9.4853 9.4382 0.9621 20 6 11.5261 9.9667 0.5847 21 7 12.7750 9.5536 0.5786 22 14 11.1208 11.7228 0.0937 23 1 10.4564 12.4133 1.2283 24 1 12.3726 12.4399 -0.2582 25 1 10.2109 11.7113 -1.0799 26 6 8.4600 7.5028 1.5616 27 6 7.3972 6.6591 1.8181 28 6 4.0181 2.7454 0.0338 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 4.4549 -0.4081 1.0592 33 1 3.3869 0.6144 2.0690 34 1 6.2133 1.2420 1.0532 35 1 5.5701 1.4026 2.7191 36 1 6.7209 3.3505 0.6031 37 1 5.6574 4.9660 2.8272 38 1 6.7820 3.5998 3.0198 39 1 9.0861 3.7748 2.2880 40 1 10.9863 5.2677 1.8219 41 1 13.4853 10.1605 0.3180 42 1 8.2834 8.5491 1.3607 43 1 6.3890 7.0461 1.8180 44 1 3.1488 3.4027 0.0514 45 1 4.6365 2.9664 -0.8362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886545693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:41 Heat of formation + Delta-G solvation = -116.478074 kcal Electronic energy + Delta-G solvation = -25465.085958 eV Core-core repulsion = 21639.970797 eV Total energy + Delta-G solvation = -3825.115161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75331 -40.77491 -39.45317 -38.35243 -37.46674 -35.39782 -34.22798 -31.77932 -31.42969 -30.01537 -29.07828 -27.88805 -27.22777 -25.01112 -23.59175 -23.35092 -21.99689 -21.67475 -20.56633 -19.81106 -18.84757 -18.77718 -17.75431 -17.54840 -16.84823 -16.46629 -16.41985 -16.16318 -15.68461 -15.48961 -15.21590 -14.92131 -14.66752 -14.49464 -14.28231 -14.23562 -13.99293 -13.58317 -13.45488 -13.18453 -13.07658 -12.87539 -12.63394 -12.50579 -12.34915 -12.24882 -12.17738 -12.13450 -11.84538 -11.82110 -11.72954 -11.52462 -11.33718 -11.15428 -10.77635 -9.74482 -9.21780 -8.86604 -8.46145 -6.14064 0.63559 0.70877 1.14168 1.35084 1.45678 1.51114 1.74815 2.18610 2.80052 3.10536 3.33952 3.54866 3.57432 3.71429 3.77701 4.07702 4.13223 4.23453 4.27025 4.30698 4.33326 4.37904 4.42818 4.46051 4.55441 4.63060 4.63901 4.65597 4.71015 4.80018 4.87612 5.02718 5.07189 5.12809 5.17592 5.19656 5.28147 5.31057 5.33704 5.44568 5.59891 5.74655 5.85893 6.04457 6.18801 6.29678 6.58191 6.70251 6.98676 7.79869 8.76789 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028137 B = 0.001943 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.882928 B =14403.707096 C =15031.845635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.540 6.540 5 C -0.082 4.082 6 H 0.132 0.868 7 C -0.100 4.100 8 C -0.149 4.149 9 C 0.086 3.914 10 H 0.077 0.923 11 N -0.688 5.688 12 C 0.124 3.876 13 C -0.156 4.156 14 C -0.057 4.057 15 C -0.204 4.204 16 C 0.112 3.888 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.259 1.259 26 C -0.246 4.246 27 C -0.053 4.053 28 C -0.110 4.110 29 H 0.132 0.868 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.347 0.653 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.272 0.728 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.067 0.933 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.900 -21.785 0.991 30.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.430 6.430 5 C -0.102 4.102 6 H 0.150 0.850 7 C -0.138 4.138 8 C -0.188 4.188 9 C -0.024 4.024 10 H 0.095 0.905 11 N -0.319 5.319 12 C -0.004 4.004 13 C -0.158 4.158 14 C -0.075 4.075 15 C -0.224 4.224 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.220 4.220 21 N -0.558 5.558 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.195 1.195 25 H -0.183 1.183 26 C -0.265 4.265 27 C -0.072 4.072 28 C -0.148 4.148 29 H 0.150 0.850 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.167 0.833 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.168 0.832 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.086 0.914 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.095 -20.914 0.810 30.434 hybrid contribution 0.381 0.581 0.015 0.695 sum -21.713 -20.332 0.826 29.758 Atomic orbital electron populations 1.23533 0.75146 1.05662 1.02331 1.86512 1.24693 1.32798 1.83636 1.24232 0.93016 0.80986 0.70770 1.90652 1.67915 1.37515 1.46889 1.21795 0.85461 0.99220 1.03696 0.84998 1.22202 0.97190 1.00061 0.94324 1.23228 0.98249 0.94737 1.02551 1.22406 0.92238 0.91012 0.96736 0.90477 1.60463 1.11370 1.38251 1.21787 1.20604 0.93687 0.95431 0.90721 1.19639 0.94441 0.94148 1.07523 1.20907 0.90817 0.99310 0.96506 1.20463 1.00402 0.90691 1.10813 1.19969 0.88045 0.91533 0.94234 1.83933 1.30824 1.22137 1.77098 1.21756 0.95769 0.84879 1.46597 0.88341 1.26563 0.94195 1.04872 0.96374 1.70170 1.00432 1.38292 1.46919 0.84671 0.78232 0.74093 0.79365 1.18217 1.19494 1.18323 1.21248 0.92632 1.01026 1.11610 1.20902 0.97581 0.93304 0.95370 1.22164 1.00131 0.93297 0.99234 0.85003 0.92199 0.92224 0.88317 0.91448 0.89796 0.90320 0.83324 0.90678 0.92905 0.83164 0.86851 0.91858 0.86782 0.85091 0.91444 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.39 10.53 -51.44 -0.54 -5.94 16 3 C 0.47 8.38 7.11 71.24 0.51 8.89 16 4 O -0.54 -13.49 14.96 21.97 0.33 -13.16 16 5 C -0.08 -1.08 3.41 -10.81 -0.04 -1.12 16 6 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 7 C -0.10 -0.99 6.32 31.67 0.20 -0.79 16 8 C -0.15 -1.64 6.41 31.88 0.20 -1.44 16 9 C 0.09 1.40 3.16 45.99 0.15 1.55 16 10 H 0.08 1.37 7.88 -2.39 -0.02 1.36 16 11 N -0.69 -13.90 6.26 -490.03 -3.07 -16.96 16 12 C 0.12 2.70 5.66 85.56 0.48 3.18 16 13 C -0.16 -4.73 5.40 -19.83 -0.11 -4.83 16 14 C -0.06 -1.81 9.69 22.25 0.22 -1.60 16 15 C -0.20 -8.60 9.99 22.39 0.22 -8.37 16 16 C 0.11 5.67 6.65 22.58 0.15 5.82 16 17 O -0.23 -14.26 9.76 -22.69 -0.22 -14.48 16 18 C -0.41 -24.56 9.49 67.92 0.64 -23.91 16 19 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 20 C -0.02 -1.30 5.49 84.84 0.47 -0.84 16 21 N -0.92 -57.02 13.67 21.61 0.30 -56.72 16 22 Si 1.02 43.59 29.55 68.60 2.03 45.62 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 26 C -0.25 -11.00 9.17 22.39 0.21 -10.79 16 27 C -0.05 -1.88 9.69 22.25 0.22 -1.67 16 28 C -0.11 -1.90 6.14 31.32 0.19 -1.71 16 29 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 31 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.74 7.85 -2.39 -0.02 0.72 16 34 H 0.08 0.83 7.82 -2.39 -0.02 0.81 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.35 6.64 8.29 -89.70 -0.74 5.90 16 37 H 0.07 1.62 8.02 -2.39 -0.02 1.60 16 38 H 0.05 0.95 8.06 -2.38 -0.02 0.93 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 43 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.07 1.52 6.40 -2.39 -0.02 1.51 16 45 H 0.08 1.44 8.04 -2.38 -0.02 1.42 16 Total: -1.00 -75.50 374.92 3.99 -71.51 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.26 Total: 26.29 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 4.91 Total: -36.16 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -2.77 Total: -73.68 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.43 Total: -33.57 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -75.50 3.99 -71.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886545693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.965 kcal (2) G-P(sol) polarization free energy of solvation -75.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds