Wall clock time and date at job start Tue Mar 31 2020 12:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00029 * 2 1 4 4 O 1.20821 * 119.99912 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99770 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46885 * 180.02562 * 5 3 2 7 7 C 1.37100 * 119.99959 * 269.99512 * 6 5 3 8 8 H 1.08002 * 120.00107 * 140.64861 * 7 6 5 9 9 C 1.38950 * 120.00040 * 320.65978 * 7 6 5 10 10 N 1.31415 * 120.00117 * 158.99829 * 9 7 6 11 11 Si 1.86801 * 119.99887 * 338.98629 * 9 7 6 12 12 H 1.48502 * 109.46773 * 95.81494 * 11 9 7 13 13 H 1.48496 * 109.47343 * 215.81448 * 11 9 7 14 14 H 1.48496 * 109.47260 * 335.82235 * 11 9 7 15 15 C 1.34771 * 120.00378 * 90.00088 * 6 5 3 16 16 O 1.21291 * 120.00199 * 5.00052 * 15 6 5 17 17 C 1.50698 * 120.00216 * 185.00051 * 15 6 5 18 18 C 1.53002 * 109.47248 * 185.46110 * 17 15 6 19 19 C 1.53006 * 109.47164 * 179.12337 * 18 17 15 20 20 C 1.53002 * 109.47164 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47275 * 180.02562 * 20 19 18 22 22 C 1.38236 * 120.00095 * 89.99775 * 21 20 19 23 23 C 1.38236 * 119.99899 * 179.97438 * 22 21 20 24 24 C 1.38239 * 119.99824 * 359.97393 * 23 22 21 25 25 C 1.38228 * 120.00139 * 0.28489 * 24 23 22 26 26 C 1.38236 * 119.99808 * 269.97758 * 21 20 19 27 27 H 1.09000 * 109.47477 * 59.99509 * 1 2 3 28 28 H 1.09002 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46829 * 299.99248 * 1 2 3 30 30 H 1.09005 * 109.47360 * 60.00211 * 5 3 2 31 31 H 1.09000 * 109.47315 * 299.99847 * 5 3 2 32 32 H 0.97001 * 119.99345 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47044 * 65.46236 * 17 15 6 34 34 H 1.08995 * 109.47278 * 305.46386 * 17 15 6 35 35 H 1.08994 * 109.47175 * 59.12723 * 18 17 15 36 36 H 1.08997 * 109.47243 * 299.12370 * 18 17 15 37 37 H 1.09001 * 109.46744 * 60.00518 * 19 18 17 38 38 H 1.08997 * 109.47068 * 300.00141 * 19 18 17 39 39 H 1.08998 * 109.47089 * 59.99871 * 20 19 18 40 40 H 1.09002 * 109.46607 * 300.00351 * 20 19 18 41 41 H 1.07995 * 120.00307 * 359.97438 * 22 21 20 42 42 H 1.08001 * 120.00060 * 180.02562 * 23 22 21 43 43 H 1.08005 * 119.99704 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.99998 * 179.72258 * 25 24 23 45 45 H 1.07999 * 119.99890 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.1756 3.3378 -1.1868 8 1 3.8610 4.3656 -1.2921 9 6 4.7767 2.6824 -2.2545 10 7 4.6031 3.1255 -3.4794 11 14 5.8319 1.1716 -1.9484 12 1 5.0123 -0.0518 -2.1409 13 1 6.9693 1.1606 -2.9030 14 1 6.3526 1.2048 -0.5582 15 6 4.1732 3.3252 1.1676 16 8 4.0905 2.7204 2.2157 17 6 4.4902 4.7984 1.1709 18 6 4.7929 5.2519 2.6005 19 6 5.1361 6.7429 2.6007 20 6 5.4381 7.1965 4.0304 21 6 5.7755 8.6652 4.0308 22 6 4.7740 9.6044 4.1910 23 6 5.0836 10.9517 4.1919 24 6 6.3948 11.3596 4.0331 25 6 7.3956 10.4206 3.8676 26 6 7.0866 9.0732 3.8714 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 3.9557 0.7809 -0.8909 31 1 3.9563 0.7805 0.8891 32 1 5.0231 2.6681 -4.2246 33 1 3.6353 5.3549 0.7866 34 1 5.3586 4.9847 0.5391 35 1 5.6380 4.6845 2.9903 36 1 3.9190 5.0800 3.2288 37 1 4.2909 7.3103 2.2109 38 1 6.0100 6.9147 1.9724 39 1 6.2830 6.6291 4.4207 40 1 4.5639 7.0246 4.6584 41 1 3.7497 9.2857 4.3155 42 1 4.3012 11.6855 4.3174 43 1 6.6368 12.4122 4.0342 44 1 8.4194 10.7395 3.7391 45 1 7.8691 8.3394 3.7462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889076946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:35 Heat of formation + Delta-G solvation = -102.392558 kcal Electronic energy + Delta-G solvation = -26064.878814 eV Core-core repulsion = 22240.374446 eV Total energy + Delta-G solvation = -3824.504368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.01638 -39.37895 -38.71424 -36.04148 -35.36952 -34.77115 -32.18399 -32.03282 -30.96273 -29.43876 -28.20085 -26.56149 -25.13296 -24.02145 -22.64446 -21.53006 -20.77798 -20.49454 -19.03884 -17.43902 -17.11369 -16.79039 -16.50531 -15.81937 -15.68303 -15.46230 -15.28939 -15.12831 -14.81360 -14.02653 -13.83202 -13.47173 -13.42585 -13.25346 -13.11810 -12.97433 -12.76131 -12.36950 -12.09386 -11.98258 -11.79232 -11.63702 -11.52425 -11.21862 -11.04339 -10.80348 -10.74497 -10.63071 -10.48982 -10.35332 -10.15903 -10.10777 -9.91329 -9.33035 -9.00235 -8.78863 -8.66152 -7.97460 -6.56257 -4.19278 1.28918 1.31916 2.84260 2.95541 3.01018 3.16806 3.20778 3.70412 3.74963 4.01208 4.26916 4.73356 4.76879 4.86763 4.91589 5.03938 5.18158 5.30123 5.36141 5.43187 5.43699 5.44675 5.47482 5.53599 5.68676 5.71957 5.78190 5.80078 5.90564 5.96644 5.97092 6.02009 6.17916 6.22389 6.34376 6.39961 6.42245 6.48353 6.59557 6.72610 6.81413 6.84601 6.94080 7.16208 7.96216 8.16067 8.38814 8.83758 9.19916 9.52415 10.54249 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015389 B = 0.002716 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.068424 B =10304.957624 C =11286.639039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.489 6.489 5 C 0.108 3.892 6 N -0.454 5.454 7 C -0.341 4.341 8 H 0.107 0.893 9 C 0.066 3.934 10 N -0.853 5.853 11 Si 0.861 3.139 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.497 3.503 16 O -0.594 6.594 17 C -0.118 4.118 18 C -0.102 4.102 19 C -0.112 4.112 20 C -0.083 4.083 21 C -0.074 4.074 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.119 4.119 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.277 0.723 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 6.767 10.593 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.374 6.374 5 C -0.018 4.018 6 N -0.175 5.175 7 C -0.468 4.468 8 H 0.125 0.875 9 C -0.142 4.142 10 N -0.487 5.487 11 Si 0.687 3.313 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.179 1.179 15 C 0.289 3.711 16 O -0.478 6.478 17 C -0.157 4.157 18 C -0.140 4.140 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.074 4.074 22 C -0.137 4.137 23 C -0.138 4.138 24 C -0.149 4.149 25 C -0.138 4.138 26 C -0.137 4.137 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.208 6.776 10.878 12.873 hybrid contribution 0.188 -0.688 -0.411 0.823 sum 1.397 6.088 10.467 12.189 Atomic orbital electron populations 1.23134 0.77582 1.02829 1.02240 1.86525 1.22654 1.34569 1.84934 1.24793 0.92878 0.81183 0.72228 1.90607 1.66604 1.36262 1.43958 1.21330 0.86739 0.88857 1.04858 1.43428 1.58969 1.08307 1.06803 1.19079 1.40359 0.99808 0.87597 0.87506 1.25370 0.96097 0.97989 0.94716 1.69767 1.39683 1.40954 0.98313 0.87147 0.81437 0.82717 0.79975 1.19691 1.20671 1.17915 1.20597 0.77792 0.90018 0.82720 1.90538 1.56121 1.69179 1.31967 1.21372 1.03789 0.92945 0.97639 1.21358 1.02134 0.94037 0.96486 1.21592 1.01845 0.96367 0.95189 1.20672 1.02233 0.90812 0.98298 1.20037 0.93303 0.96029 0.98042 1.21100 0.99149 0.92862 1.00585 1.21139 0.96503 0.95896 1.00249 1.21109 0.93230 0.99340 1.01245 1.21139 0.99213 0.93242 1.00175 1.21103 0.96175 0.95925 1.00458 0.92188 0.88725 0.92366 0.87890 0.86958 0.91309 0.89643 0.88825 0.91731 0.91734 0.91875 0.91730 0.90924 0.90970 0.86077 0.86297 0.86431 0.86282 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.96 10.56 -39.26 -0.41 -7.38 16 3 C 0.45 9.99 8.02 36.00 0.29 10.28 16 4 O -0.49 -12.14 16.18 -18.75 -0.30 -12.44 16 5 C 0.11 2.41 4.84 -5.20 -0.03 2.39 16 6 N -0.45 -10.99 1.63 -116.10 -0.19 -11.18 16 7 C -0.34 -8.83 8.93 -14.93 -0.13 -8.96 16 8 H 0.11 2.91 7.45 -52.49 -0.39 2.52 16 9 C 0.07 1.71 5.32 -17.47 -0.09 1.62 16 10 N -0.85 -23.13 13.96 55.50 0.77 -22.36 16 11 Si 0.86 19.27 25.02 -169.99 -4.25 15.02 16 12 H -0.27 -5.77 6.71 56.52 0.38 -5.39 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 15 C 0.50 11.51 7.62 -10.99 -0.08 11.42 16 16 O -0.59 -14.53 15.55 5.55 0.09 -14.45 16 17 C -0.12 -2.25 4.35 -27.88 -0.12 -2.37 16 18 C -0.10 -1.63 4.51 -26.73 -0.12 -1.75 16 19 C -0.11 -1.47 5.20 -26.73 -0.14 -1.61 16 20 C -0.08 -0.95 5.34 -27.88 -0.15 -1.10 16 21 C -0.07 -0.85 5.13 -104.63 -0.54 -1.39 16 22 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 23 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 26 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 27 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 30 H 0.10 2.29 3.42 -51.93 -0.18 2.11 16 31 H 0.11 2.35 7.36 -51.93 -0.38 1.96 16 32 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.09 1.62 8.04 -51.93 -0.42 1.21 16 34 H 0.09 1.76 7.86 -51.93 -0.41 1.35 16 35 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 36 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -31.15 378.96 -7.44 -38.59 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.84 Total: 6.55 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.01 Total: 1.93 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.59 Total: -33.54 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.63 Total: -34.26 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.25 Total: 15.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.15 -7.44 -38.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889076946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.800 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds