Wall clock time and date at job start Tue Mar 31 2020 12:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00227 * 2 1 4 4 O 1.20830 * 119.99897 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00197 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47270 * 186.13319 * 5 3 2 7 7 H 1.09002 * 109.46971 * 306.48287 * 6 5 3 8 8 C 1.52990 * 109.46970 * 66.48430 * 6 5 3 9 9 C 1.50703 * 109.47234 * 185.00363 * 8 6 5 10 10 C 1.38233 * 120.00449 * 89.99275 * 9 8 6 11 11 C 1.38234 * 120.00473 * 180.02562 * 10 9 8 12 12 C 1.38234 * 119.99594 * 0.02562 * 11 10 9 13 13 C 1.38243 * 120.00193 * 0.25184 * 12 11 10 14 14 C 1.38236 * 119.99720 * 359.47268 * 13 12 11 15 15 N 1.46497 * 109.47230 * 186.48536 * 6 5 3 16 16 C 1.34774 * 120.00236 * 88.94369 * 15 6 5 17 17 O 1.21288 * 120.00046 * 355.08246 * 16 15 6 18 18 C 1.50704 * 120.00293 * 175.07790 * 16 15 6 19 19 C 1.53000 * 109.47319 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47011 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00321 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99910 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00042 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99967 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47034 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47247 * 120.00087 * 24 22 20 27 27 H 1.48506 * 109.46964 * 239.99717 * 24 22 20 28 28 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46854 * 299.99752 * 1 2 3 30 30 H 1.08999 * 109.47062 * 59.99838 * 1 2 3 31 31 H 1.09004 * 109.47126 * 66.13270 * 5 3 2 32 32 H 1.09001 * 109.47648 * 306.13047 * 5 3 2 33 33 H 1.08997 * 109.47633 * 65.00314 * 8 6 5 34 34 H 1.08999 * 109.47249 * 304.99687 * 8 6 5 35 35 H 1.07999 * 119.99764 * 359.97438 * 10 9 8 36 36 H 1.07994 * 120.00466 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.99910 * 179.97438 * 12 11 10 38 38 H 1.07995 * 119.99875 * 179.72135 * 13 12 11 39 39 H 1.08002 * 119.99849 * 180.27394 * 14 13 12 40 40 H 0.96999 * 120.00199 * 268.94896 * 15 6 5 41 41 H 1.09000 * 109.46888 * 300.00480 * 18 16 15 42 42 H 1.09000 * 109.47138 * 60.00173 * 18 16 15 43 43 H 1.08996 * 109.46759 * 300.00072 * 19 18 16 44 44 H 1.09007 * 109.47123 * 60.00221 * 19 18 16 45 45 H 0.97000 * 120.00238 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0005 2.7338 0.1546 7 1 3.5134 3.3404 -0.6089 8 6 3.6003 3.2414 1.5412 9 6 3.9166 4.7109 1.6490 10 6 2.9697 5.6502 1.2859 11 6 3.2600 6.9982 1.3842 12 6 4.4976 7.4067 1.8451 13 6 5.4466 6.4673 2.2028 14 6 5.1542 5.1194 2.1099 15 7 5.4542 2.8296 0.0003 16 6 5.9916 3.0130 -1.2219 17 8 5.2799 3.0095 -2.2041 18 6 7.4768 3.2224 -1.3685 19 6 7.8227 3.4048 -2.8477 20 6 9.3078 3.6149 -2.9940 21 1 9.9415 3.6184 -2.1195 22 6 9.8574 3.8037 -4.2443 23 7 9.0856 3.7999 -5.3092 24 14 11.6983 4.0634 -4.4259 25 1 12.3382 4.0238 -3.0864 26 1 12.2679 2.9897 -5.2790 27 1 11.9521 5.3837 -5.0565 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9513 0.8784 -0.9390 32 1 3.9606 0.6889 0.8309 33 1 4.1551 2.6935 2.3029 34 1 2.5314 3.0881 1.6897 35 1 2.0033 5.3310 0.9246 36 1 2.5204 7.7320 1.1002 37 1 4.7246 8.4598 1.9216 38 1 6.4150 6.7865 2.5586 39 1 5.8941 4.3855 2.3935 40 1 6.0300 2.7609 0.7779 41 1 7.7747 4.1121 -0.8136 42 1 8.0066 2.3547 -0.9754 43 1 7.5247 2.5154 -3.4028 44 1 7.2929 4.2728 -3.2403 45 1 9.4723 3.9323 -6.1889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890865681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:54 Heat of formation + Delta-G solvation = -117.886538 kcal Electronic energy + Delta-G solvation = -26549.858940 eV Core-core repulsion = 22724.682703 eV Total energy + Delta-G solvation = -3825.176237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83837 -39.64967 -38.85129 -36.93295 -35.67376 -33.43522 -32.36695 -31.47176 -30.88195 -30.58942 -28.28096 -26.77509 -25.72174 -23.16085 -22.62210 -21.59916 -21.23480 -20.34721 -19.68083 -17.89585 -17.14621 -16.84006 -16.74219 -16.56761 -15.70344 -15.61418 -15.16494 -14.90675 -14.76424 -14.39685 -14.14345 -13.77122 -13.56906 -13.41740 -13.21808 -13.02236 -12.57513 -12.52370 -12.25762 -12.19259 -12.03279 -11.90308 -11.21097 -11.14619 -11.05397 -10.98375 -10.93087 -10.90593 -10.64530 -10.56559 -9.94742 -9.65622 -9.16739 -9.01423 -8.96669 -8.86282 -8.66473 -8.31106 -5.94932 -3.99188 1.34761 1.41933 2.03998 2.45839 3.23342 3.33193 3.40170 3.43264 3.58050 3.76348 4.44655 4.48713 4.69251 4.72940 4.80330 4.86195 4.94146 4.99310 5.03265 5.11170 5.14572 5.25209 5.29121 5.40133 5.46497 5.52215 5.59849 5.64369 5.68105 6.00598 6.03275 6.07309 6.20168 6.24031 6.26093 6.46372 6.52098 6.58027 6.72332 6.90719 7.01113 7.56256 7.75906 7.86736 7.87970 8.08596 8.39946 8.77298 9.09635 9.64343 11.16015 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010176 B = 0.003472 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.803421 B = 8063.204389 C =10171.515152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.129 4.129 6 C 0.163 3.837 7 H 0.102 0.898 8 C -0.092 4.092 9 C -0.076 4.076 10 C -0.112 4.112 11 C -0.120 4.120 12 C -0.125 4.125 13 C -0.118 4.118 14 C -0.111 4.111 15 N -0.735 5.735 16 C 0.512 3.488 17 O -0.531 6.531 18 C -0.129 4.129 19 C 0.037 3.963 20 C -0.525 4.525 21 H 0.056 0.944 22 C 0.057 3.943 23 N -0.889 5.889 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.397 0.603 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.899 -3.067 19.284 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.168 4.168 6 C 0.057 3.943 7 H 0.120 0.880 8 C -0.129 4.129 9 C -0.076 4.076 10 C -0.130 4.130 11 C -0.138 4.138 12 C -0.143 4.143 13 C -0.136 4.136 14 C -0.129 4.129 15 N -0.389 5.389 16 C 0.301 3.699 17 O -0.406 6.406 18 C -0.169 4.169 19 C -0.001 4.001 20 C -0.564 4.564 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.231 0.769 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.639 -2.731 18.345 24.261 hybrid contribution 1.063 0.166 0.111 1.082 sum -14.576 -2.565 18.456 23.657 Atomic orbital electron populations 1.23259 0.76392 1.03620 1.02587 1.86520 1.23431 1.33633 1.84159 1.23676 0.92010 0.81304 0.71996 1.90664 1.67232 1.36127 1.45110 1.21927 0.87515 1.00660 1.06724 1.20555 0.82529 0.93000 0.98214 0.87997 1.21015 1.03324 0.92459 0.96148 1.19689 0.94215 0.94860 0.98874 1.21094 0.99538 0.92869 0.99538 1.21130 0.97086 0.95866 0.99711 1.21139 0.93923 0.99482 0.99719 1.21133 0.99202 0.93185 1.00060 1.20997 0.95976 0.95943 1.00020 1.46214 1.06023 1.76504 1.10142 1.21606 0.92199 0.74251 0.81865 1.90683 1.63217 1.48928 1.37734 1.21865 0.88478 1.02197 1.04385 1.18898 0.95782 0.98373 0.87008 1.21252 0.92803 1.49665 0.92662 0.92584 1.25026 0.97894 0.95448 0.96044 1.70009 1.34859 1.49725 0.98208 0.86549 0.85675 0.77741 0.78078 1.19754 1.21030 1.21045 0.88188 0.91934 0.91791 0.86494 0.87542 0.90624 0.88918 0.85969 0.86296 0.86339 0.86100 0.86297 0.76879 0.90193 0.90269 0.95845 0.95853 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.83 10.56 -39.25 -0.41 -4.24 16 3 C 0.47 5.52 7.52 36.00 0.27 5.79 16 4 O -0.50 -6.97 14.09 -18.75 -0.26 -7.23 16 5 C -0.13 -1.41 5.59 -27.88 -0.16 -1.57 16 6 C 0.16 2.03 1.69 -67.93 -0.12 1.92 16 7 H 0.10 1.66 7.20 -51.93 -0.37 1.28 16 8 C -0.09 -0.93 4.72 -27.89 -0.13 -1.07 16 9 C -0.08 -0.89 4.95 -104.62 -0.52 -1.41 16 10 C -0.11 -1.38 9.70 -39.58 -0.38 -1.76 16 11 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 12 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 13 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 14 C -0.11 -1.23 9.17 -39.58 -0.36 -1.59 16 15 N -0.73 -9.67 4.44 -53.81 -0.24 -9.91 16 16 C 0.51 9.54 7.82 -10.98 -0.09 9.45 16 17 O -0.53 -12.31 15.63 5.55 0.09 -12.22 16 18 C -0.13 -2.57 5.64 -27.88 -0.16 -2.73 16 19 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 20 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 21 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 24 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 31 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.09 0.98 6.18 -51.93 -0.32 0.66 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.12 1.05 7.69 -52.49 -0.40 0.65 16 40 H 0.40 3.99 8.11 -40.82 -0.33 3.66 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -35.95 383.92 -8.51 -44.46 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.88 Total: 3.13 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.30 Total: -9.67 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.50 Total: -36.67 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.59 Total: -23.69 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.95 -8.51 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890865681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.431 kcal (2) G-P(sol) polarization free energy of solvation -35.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds