Wall clock time and date at job start Tue Mar 31 2020 12:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00227 * 2 1 4 4 O 1.20830 * 119.99897 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00197 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47270 * 186.13319 * 5 3 2 7 7 H 1.09002 * 109.46971 * 306.48287 * 6 5 3 8 8 C 1.52990 * 109.46970 * 66.48430 * 6 5 3 9 9 C 1.50703 * 109.47234 * 185.00363 * 8 6 5 10 10 C 1.38233 * 120.00449 * 89.99275 * 9 8 6 11 11 C 1.38234 * 120.00473 * 180.02562 * 10 9 8 12 12 C 1.38234 * 119.99594 * 0.02562 * 11 10 9 13 13 C 1.38243 * 120.00193 * 0.25184 * 12 11 10 14 14 C 1.38236 * 119.99720 * 359.47268 * 13 12 11 15 15 N 1.46497 * 109.47230 * 186.48536 * 6 5 3 16 16 C 1.34774 * 120.00236 * 88.94369 * 15 6 5 17 17 O 1.21288 * 120.00046 * 355.08246 * 16 15 6 18 18 C 1.50704 * 120.00293 * 175.07790 * 16 15 6 19 19 C 1.53000 * 109.47319 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47011 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00321 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99910 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00042 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99967 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47034 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47247 * 120.00087 * 24 22 20 27 27 H 1.48506 * 109.46964 * 239.99717 * 24 22 20 28 28 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46854 * 299.99752 * 1 2 3 30 30 H 1.08999 * 109.47062 * 59.99838 * 1 2 3 31 31 H 1.09004 * 109.47126 * 66.13270 * 5 3 2 32 32 H 1.09001 * 109.47648 * 306.13047 * 5 3 2 33 33 H 1.08997 * 109.47633 * 65.00314 * 8 6 5 34 34 H 1.08999 * 109.47249 * 304.99687 * 8 6 5 35 35 H 1.07999 * 119.99764 * 359.97438 * 10 9 8 36 36 H 1.07994 * 120.00466 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.99910 * 179.97438 * 12 11 10 38 38 H 1.07995 * 119.99875 * 179.72135 * 13 12 11 39 39 H 1.08002 * 119.99849 * 180.27394 * 14 13 12 40 40 H 0.96999 * 120.00199 * 268.94896 * 15 6 5 41 41 H 1.09000 * 109.46888 * 300.00480 * 18 16 15 42 42 H 1.09000 * 109.47138 * 60.00173 * 18 16 15 43 43 H 1.08996 * 109.46759 * 300.00072 * 19 18 16 44 44 H 1.09007 * 109.47123 * 60.00221 * 19 18 16 45 45 H 0.97000 * 120.00238 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0005 2.7338 0.1546 7 1 3.5134 3.3404 -0.6089 8 6 3.6003 3.2414 1.5412 9 6 3.9166 4.7109 1.6490 10 6 2.9697 5.6502 1.2859 11 6 3.2600 6.9982 1.3842 12 6 4.4976 7.4067 1.8451 13 6 5.4466 6.4673 2.2028 14 6 5.1542 5.1194 2.1099 15 7 5.4542 2.8296 0.0003 16 6 5.9916 3.0130 -1.2219 17 8 5.2799 3.0095 -2.2041 18 6 7.4768 3.2224 -1.3685 19 6 7.8227 3.4048 -2.8477 20 6 9.3078 3.6149 -2.9940 21 1 9.9415 3.6184 -2.1195 22 6 9.8574 3.8037 -4.2443 23 7 9.0856 3.7999 -5.3092 24 14 11.6983 4.0634 -4.4259 25 1 12.3382 4.0238 -3.0864 26 1 12.2679 2.9897 -5.2790 27 1 11.9521 5.3837 -5.0565 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9513 0.8784 -0.9390 32 1 3.9606 0.6889 0.8309 33 1 4.1551 2.6935 2.3029 34 1 2.5314 3.0881 1.6897 35 1 2.0033 5.3310 0.9246 36 1 2.5204 7.7320 1.1002 37 1 4.7246 8.4598 1.9216 38 1 6.4150 6.7865 2.5586 39 1 5.8941 4.3855 2.3935 40 1 6.0300 2.7609 0.7779 41 1 7.7747 4.1121 -0.8136 42 1 8.0066 2.3547 -0.9754 43 1 7.5247 2.5154 -3.4028 44 1 7.2929 4.2728 -3.2403 45 1 9.4723 3.9323 -6.1889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890865681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:53 Heat of formation + Delta-G solvation = -140.289167 kcal Electronic energy + Delta-G solvation = -26550.830391 eV Core-core repulsion = 22724.682703 eV Total energy + Delta-G solvation = -3826.147688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79769 -40.79781 -39.95737 -37.88875 -36.80769 -35.52019 -33.61515 -32.83615 -32.07123 -31.70412 -29.13613 -27.69749 -27.49186 -24.49680 -23.52454 -23.11242 -22.11213 -21.36889 -21.19165 -18.88233 -18.77081 -17.94647 -17.69858 -17.41421 -17.37931 -16.73373 -16.41720 -16.31095 -16.04691 -15.78168 -15.00136 -14.89257 -14.69518 -14.42839 -14.22997 -14.10707 -14.04456 -13.99726 -13.41069 -13.22900 -13.19807 -12.88741 -12.84117 -12.80855 -12.42528 -12.17508 -11.88558 -11.87439 -11.82801 -11.74107 -11.60789 -11.59901 -11.25590 -10.68874 -10.56226 -10.17883 -9.76293 -9.55863 -8.16043 -6.29712 0.47801 0.54861 1.11602 1.43423 1.44712 1.57380 1.58372 1.77652 2.35331 2.48199 2.88888 3.17291 3.52930 3.80401 3.85945 3.97940 4.07872 4.18525 4.20298 4.24896 4.30011 4.32632 4.33379 4.48417 4.54380 4.60716 4.64619 4.68817 4.72327 4.74141 4.84329 4.99874 5.14030 5.19868 5.22232 5.34740 5.47232 5.54336 5.60911 5.66915 5.66943 5.75796 5.88499 6.17542 6.20182 6.65164 6.67175 6.89560 7.38903 7.41142 8.96801 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010176 B = 0.003472 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.803421 B = 8063.204389 C =10171.515152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.469 3.531 4 O -0.530 6.530 5 C -0.125 4.125 6 C 0.166 3.834 7 H 0.058 0.942 8 C -0.080 4.080 9 C -0.090 4.090 10 C -0.135 4.135 11 C -0.135 4.135 12 C -0.136 4.136 13 C -0.128 4.128 14 C -0.117 4.117 15 N -0.705 5.705 16 C 0.515 3.485 17 O -0.588 6.588 18 C -0.118 4.118 19 C 0.042 3.958 20 C -0.539 4.539 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.939 5.939 24 Si 0.973 3.027 25 H -0.251 1.251 26 H -0.281 1.281 27 H -0.283 1.283 28 H 0.131 0.869 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.419 0.581 41 H 0.102 0.898 42 H 0.110 0.890 43 H -0.017 1.017 44 H -0.023 1.023 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 -3.961 22.334 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.313 3.687 4 O -0.420 6.420 5 C -0.163 4.163 6 C 0.061 3.939 7 H 0.076 0.924 8 C -0.118 4.118 9 C -0.090 4.090 10 C -0.153 4.153 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.146 4.146 14 C -0.135 4.135 15 N -0.359 5.359 16 C 0.304 3.696 17 O -0.467 6.467 18 C -0.158 4.158 19 C 0.004 3.996 20 C -0.576 4.576 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.579 5.579 24 Si 0.797 3.203 25 H -0.174 1.174 26 H -0.207 1.207 27 H -0.209 1.209 28 H 0.149 0.851 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.166 0.834 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.257 0.743 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.002 0.998 44 H -0.005 1.005 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.762 -3.648 21.483 25.772 hybrid contribution 0.361 0.448 -0.832 1.011 sum -13.401 -3.200 20.651 24.826 Atomic orbital electron populations 1.23547 0.74784 1.05684 1.02514 1.86505 1.25034 1.32744 1.83707 1.23791 0.92320 0.81306 0.71323 1.90664 1.67865 1.37038 1.46424 1.21863 0.87220 0.99717 1.07516 1.20496 0.81174 0.93705 0.98544 0.92391 1.20963 1.03677 0.91948 0.95179 1.19918 0.94553 0.95453 0.99036 1.21260 0.99885 0.93705 1.00462 1.21375 0.97914 0.96006 0.99995 1.21449 0.93798 1.00690 0.99483 1.21497 0.99998 0.93414 0.99720 1.21345 0.96093 0.96654 0.99418 1.45801 1.06826 1.74250 1.09000 1.21347 0.91542 0.73995 0.82712 1.90677 1.64145 1.51836 1.40040 1.21629 0.89868 1.04582 0.99680 1.18686 0.95140 0.94498 0.91253 1.21751 0.93571 1.48847 0.93480 0.90450 1.26140 1.03717 0.95015 0.95704 1.70191 1.37617 1.51137 0.98957 0.85291 0.78657 0.77440 0.78963 1.17394 1.20670 1.20898 0.85086 0.91301 0.92654 0.88163 0.83433 0.86898 0.89247 0.86708 0.85252 0.84684 0.84137 0.83560 0.74296 0.87988 0.87175 0.99836 1.00454 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.30 10.56 -51.37 -0.54 -7.84 16 3 C 0.47 10.86 7.52 71.23 0.54 11.39 16 4 O -0.53 -14.95 14.09 21.95 0.31 -14.64 16 5 C -0.12 -2.57 5.59 29.85 0.17 -2.40 16 6 C 0.17 4.03 1.69 44.99 0.08 4.11 16 7 H 0.06 1.98 7.20 -2.39 -0.02 1.96 16 8 C -0.08 -1.48 4.72 29.85 0.14 -1.33 16 9 C -0.09 -1.98 4.95 -19.86 -0.10 -2.08 16 10 C -0.14 -3.38 9.70 22.27 0.22 -3.16 16 11 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 12 C -0.14 -2.93 10.05 22.27 0.22 -2.71 16 13 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 14 C -0.12 -2.29 9.17 22.27 0.20 -2.08 16 15 N -0.70 -17.27 4.44 -442.53 -1.97 -19.23 16 16 C 0.52 19.17 7.82 87.66 0.69 19.85 16 17 O -0.59 -28.65 15.63 -3.05 -0.05 -28.70 16 18 C -0.12 -4.56 5.64 29.85 0.17 -4.39 16 19 C 0.04 2.32 4.26 29.85 0.13 2.45 16 20 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 21 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 22 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 23 N -0.94 -59.86 13.29 21.45 0.28 -59.58 16 24 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 25 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 1.25 8.09 -2.39 -0.02 1.23 16 34 H 0.09 1.78 6.18 -2.39 -0.01 1.77 16 35 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 38 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.15 1.94 7.69 -2.91 -0.02 1.92 16 40 H 0.42 6.74 8.11 -92.71 -0.75 5.99 16 41 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 42 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 43 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 44 H -0.02 -1.47 8.10 -2.38 -0.02 -1.49 16 45 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -83.61 383.92 5.08 -78.53 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.23 Total: 19.51 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 4.79 Total: -14.28 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -1.68 Total: -78.81 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.28 Total: -51.18 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -83.61 5.08 -78.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890865681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.759 kcal (2) G-P(sol) polarization free energy of solvation -83.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds