Wall clock time and date at job start Tue Mar 31 2020 12:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99760 * 2 1 4 4 O 1.20818 * 120.00305 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99672 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46940 * 178.60696 * 5 3 2 7 7 H 1.09000 * 109.47313 * 305.65788 * 6 5 3 8 8 C 1.53006 * 109.46978 * 185.66339 * 6 5 3 9 9 C 1.50700 * 109.47172 * 175.00012 * 8 6 5 10 10 C 1.38237 * 119.99996 * 269.72969 * 9 8 6 11 11 C 1.38237 * 119.99985 * 179.76706 * 10 9 8 12 12 C 1.38236 * 120.00101 * 0.49953 * 11 10 9 13 13 C 1.38240 * 119.99418 * 359.74885 * 12 11 10 14 14 C 1.38227 * 120.00475 * 0.02562 * 13 12 11 15 15 N 1.46501 * 109.47255 * 65.66397 * 6 5 3 16 16 C 1.34783 * 119.99654 * 224.50544 * 15 6 5 17 17 O 1.21282 * 119.99803 * 5.04305 * 16 15 6 18 18 C 1.50700 * 119.99748 * 185.04861 * 16 15 6 19 19 C 1.52999 * 109.47081 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47089 * 179.97438 * 19 18 16 21 21 H 1.07994 * 119.99952 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99657 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99703 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00379 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46628 * 89.99832 * 24 22 20 26 26 H 1.48490 * 109.47646 * 209.99922 * 24 22 20 27 27 H 1.48498 * 109.46940 * 330.00512 * 24 22 20 28 28 H 1.09005 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47160 * 299.99669 * 1 2 3 30 30 H 1.09001 * 109.47552 * 59.99927 * 1 2 3 31 31 H 1.08998 * 109.47319 * 58.60591 * 5 3 2 32 32 H 1.09008 * 109.47274 * 298.60522 * 5 3 2 33 33 H 1.09000 * 109.46968 * 294.99270 * 8 6 5 34 34 H 1.08994 * 109.47589 * 54.99524 * 8 6 5 35 35 H 1.07999 * 119.99610 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.99523 * 180.22709 * 11 10 9 37 37 H 1.07999 * 120.00117 * 179.72680 * 12 11 10 38 38 H 1.08009 * 119.99180 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.99925 * 179.97438 * 14 13 12 40 40 H 0.96991 * 120.00055 * 44.50141 * 15 6 5 41 41 H 1.09002 * 109.47128 * 299.99622 * 18 16 15 42 42 H 1.08999 * 109.47420 * 59.99477 * 18 16 15 43 43 H 1.09002 * 109.47054 * 299.99940 * 19 18 16 44 44 H 1.08999 * 109.47198 * 59.99614 * 19 18 16 45 45 H 0.96997 * 119.99977 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0000 2.7417 -0.0355 7 1 3.5293 3.2397 -0.8832 8 6 5.5214 2.8203 -0.1785 9 6 5.9374 4.2601 -0.3362 10 6 6.0270 4.8195 -1.5972 11 6 6.4039 6.1416 -1.7416 12 6 6.7012 6.9015 -0.6257 13 6 6.6165 6.3406 0.6349 14 6 6.2351 5.0199 0.7796 15 7 3.5916 3.4015 1.2071 16 6 3.0215 4.6221 1.1660 17 8 2.7630 5.1350 0.0978 18 6 2.7054 5.3496 2.4474 19 6 2.0691 6.7025 2.1221 20 6 1.7525 7.4297 3.4035 21 1 1.9824 6.9728 4.3547 22 6 1.1701 8.6787 3.3615 23 7 0.8942 9.3136 4.4797 24 14 0.7730 9.4693 1.7162 25 1 -0.6013 9.0878 1.3027 26 1 0.8598 10.9462 1.8429 27 1 1.7448 9.0020 0.6952 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9568 0.7595 -0.8780 32 1 3.9552 0.8023 0.9014 33 1 5.9920 2.4016 0.7111 34 1 5.8337 2.2537 -1.0556 35 1 5.7994 4.2245 -2.4693 36 1 6.4704 6.5796 -2.7266 37 1 6.9999 7.9331 -0.7389 38 1 6.8491 6.9342 1.5067 39 1 6.1693 4.5816 1.7645 40 1 3.7314 2.9599 2.0593 41 1 2.0114 4.7547 3.0412 42 1 3.6243 5.5069 3.0121 43 1 2.7634 7.2971 1.5285 44 1 1.1503 6.5454 1.5572 45 1 0.4849 10.1924 4.4502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890869952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:58 Heat of formation + Delta-G solvation = -110.949763 kcal Electronic energy + Delta-G solvation = -27350.054431 eV Core-core repulsion = 23525.178995 eV Total energy + Delta-G solvation = -3824.875436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71471 -39.59788 -38.58415 -36.77955 -35.67578 -33.36171 -32.29695 -31.44131 -30.84238 -30.68031 -28.30513 -26.73593 -25.97848 -22.96752 -22.42544 -21.37977 -20.92907 -20.44100 -19.58346 -17.72231 -17.24060 -16.87392 -16.70724 -16.40409 -15.95186 -15.57354 -15.03189 -14.93287 -14.71009 -14.06075 -13.85893 -13.70241 -13.60956 -13.26764 -13.08635 -12.88708 -12.51264 -12.47196 -12.30677 -12.20730 -12.12474 -12.00187 -11.34600 -11.32173 -10.92203 -10.89308 -10.87279 -10.82319 -10.49841 -10.05022 -9.93398 -9.70556 -9.11760 -9.00154 -8.88490 -8.70451 -8.45307 -8.41200 -5.97509 -3.95118 1.52091 1.60689 2.14883 2.54887 3.39441 3.42659 3.48476 3.53837 3.61587 3.94117 4.38850 4.56897 4.60568 4.85722 4.91784 4.92523 4.95353 5.04538 5.15817 5.18484 5.25340 5.27493 5.32960 5.38654 5.41415 5.45329 5.62133 5.68880 5.78700 6.02853 6.18289 6.18747 6.21436 6.22238 6.28824 6.63056 6.69414 6.73187 6.80152 6.83806 7.19309 7.48158 7.54856 7.68128 7.85439 7.95715 8.57784 8.90625 9.06785 9.66533 11.15490 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008771 B = 0.005021 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.682914 B = 5575.792793 C = 7919.830093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.449 3.551 4 O -0.477 6.477 5 C -0.122 4.122 6 C 0.155 3.845 7 H 0.108 0.892 8 C -0.089 4.089 9 C -0.077 4.077 10 C -0.113 4.113 11 C -0.118 4.118 12 C -0.121 4.121 13 C -0.113 4.113 14 C -0.106 4.106 15 N -0.734 5.734 16 C 0.523 3.477 17 O -0.527 6.527 18 C -0.121 4.121 19 C 0.005 3.995 20 C -0.521 4.521 21 H 0.071 0.929 22 C 0.069 3.931 23 N -0.906 5.906 24 Si 0.875 3.125 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.260 1.260 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.393 0.607 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.023 0.977 44 H 0.017 0.983 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.157 -20.518 -10.611 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.290 3.710 4 O -0.362 6.362 5 C -0.160 4.160 6 C 0.049 3.951 7 H 0.126 0.874 8 C -0.127 4.127 9 C -0.077 4.077 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.139 4.139 13 C -0.131 4.131 14 C -0.124 4.124 15 N -0.387 5.387 16 C 0.311 3.689 17 O -0.401 6.401 18 C -0.161 4.161 19 C -0.033 4.033 20 C -0.559 4.559 21 H 0.090 0.910 22 C -0.131 4.131 23 N -0.545 5.545 24 Si 0.702 3.298 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.185 1.185 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.227 0.773 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.646 -19.627 -11.333 25.040 hybrid contribution -0.559 0.335 -0.272 0.706 sum 10.087 -19.291 -11.606 24.670 Atomic orbital electron populations 1.23234 0.76325 1.03376 1.02812 1.86471 1.23474 1.33846 1.84688 1.23690 0.92148 0.81537 0.73626 1.90832 1.66730 1.35818 1.42772 1.21804 0.88322 0.99580 1.06326 1.20702 0.93379 0.89689 0.91378 0.87408 1.21000 0.95009 0.93718 1.02996 1.19564 0.99301 0.95449 0.93345 1.20906 1.00206 0.95476 0.96558 1.21049 0.99811 0.94282 0.98507 1.21117 1.00389 0.99574 0.92863 1.21157 0.99231 0.95257 0.97427 1.20952 0.99248 0.94302 0.97943 1.45994 1.64930 1.19897 1.07914 1.21217 0.74956 0.80169 0.92528 1.90629 1.51006 1.66397 1.32095 1.21620 1.02052 0.99006 0.93399 1.19322 0.96001 0.90756 0.97252 1.21134 1.40328 1.01858 0.92589 0.91050 1.24948 0.94985 0.96979 0.96230 1.69916 1.43655 1.14449 1.26469 0.86824 0.79635 0.78037 0.85272 1.20311 1.21505 1.18470 0.88312 0.91764 0.91959 0.86757 0.87316 0.90474 0.90065 0.86662 0.86550 0.86436 0.86090 0.86472 0.77328 0.90212 0.90043 0.95908 0.96445 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.37 -3.84 10.57 -39.25 -0.41 -4.26 16 3 C 0.45 5.32 7.83 36.00 0.28 5.60 16 4 O -0.48 -7.93 14.86 -18.74 -0.28 -8.20 16 5 C -0.12 -0.97 5.47 -27.88 -0.15 -1.12 16 6 C 0.15 1.72 1.83 -67.93 -0.12 1.60 16 7 H 0.11 1.62 6.83 -51.93 -0.35 1.26 16 8 C -0.09 -0.80 5.03 -27.88 -0.14 -0.94 16 9 C -0.08 -0.96 4.71 -104.62 -0.49 -1.46 16 10 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 11 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 12 C -0.12 -1.71 10.05 -39.58 -0.40 -2.10 16 13 C -0.11 -1.62 10.05 -39.58 -0.40 -2.02 16 14 C -0.11 -1.44 8.69 -39.59 -0.34 -1.78 16 15 N -0.73 -9.79 3.63 -53.80 -0.20 -9.99 16 16 C 0.52 9.93 6.60 -10.98 -0.07 9.86 16 17 O -0.53 -12.24 15.37 5.56 0.09 -12.16 16 18 C -0.12 -2.49 5.64 -27.88 -0.16 -2.65 16 19 C 0.00 0.12 3.33 -27.88 -0.09 0.03 16 20 C -0.52 -15.40 9.66 -34.44 -0.33 -15.74 16 21 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 22 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 23 N -0.91 -28.69 13.96 55.43 0.77 -27.92 16 24 Si 0.88 23.46 27.47 -169.99 -4.67 18.79 16 25 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 H -0.26 -7.01 6.54 56.52 0.37 -6.64 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.39 4.10 8.80 -40.82 -0.36 3.74 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 43 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 44 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -38.88 381.31 -8.16 -47.05 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.98 Total: 2.09 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.24 Total: -11.15 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.58 Total: -37.91 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.61 Total: -24.62 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.67 Total: 18.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.88 -8.16 -47.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890869952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.904 kcal (2) G-P(sol) polarization free energy of solvation -38.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds