Wall clock time and date at job start Tue Mar 31 2020 12:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99754 * 2 1 4 4 N 1.46902 * 109.46790 * 125.14956 * 3 2 1 5 5 C 1.46897 * 110.99827 * 199.68908 * 4 3 2 6 6 C 1.50704 * 109.47407 * 66.04228 * 5 4 3 7 7 H 1.08002 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00471 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99887 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00314 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46992 * 89.99914 * 10 8 6 12 12 H 1.48505 * 109.47186 * 210.00105 * 10 8 6 13 13 H 1.48497 * 109.47001 * 329.99886 * 10 8 6 14 14 C 1.46896 * 111.00208 * 75.73176 * 4 3 2 15 15 C 1.50697 * 109.46991 * 198.75600 * 14 4 3 16 16 C 1.38170 * 120.03270 * 255.26398 * 15 14 4 17 17 C 1.38239 * 120.05739 * 179.97438 * 16 15 14 18 18 C 1.38288 * 120.11196 * 0.02562 * 17 16 15 19 19 C 1.38119 * 120.05549 * 0.03051 * 18 17 16 20 20 C 1.38715 * 120.02649 * 74.99029 * 15 14 4 21 21 O 1.35902 * 120.05188 * 359.97438 * 20 15 14 22 22 C 1.42905 * 116.99307 * 180.02562 * 21 20 15 23 23 C 1.50699 * 109.46507 * 179.97438 * 22 21 20 24 24 O 1.20828 * 120.00424 * 359.97438 * 23 22 21 25 25 O 1.34232 * 120.00118 * 179.97438 * 23 22 21 26 26 C 1.45199 * 117.00428 * 179.97438 * 25 23 22 27 27 H 1.07997 * 120.00103 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99984 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99769 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47538 * 5.14438 * 3 2 1 31 31 H 1.09003 * 109.47222 * 245.14194 * 3 2 1 32 32 H 1.09001 * 109.47313 * 186.04510 * 5 4 3 33 33 H 1.08999 * 109.47485 * 306.04482 * 5 4 3 34 34 H 0.96999 * 120.00291 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46678 * 78.76198 * 14 4 3 36 36 H 1.08991 * 109.47587 * 318.75895 * 14 4 3 37 37 H 1.07997 * 119.96770 * 359.97438 * 16 15 14 38 38 H 1.08005 * 119.94487 * 180.02562 * 17 16 15 39 39 H 1.08002 * 119.97058 * 180.02562 * 18 17 16 40 40 H 1.08005 * 120.02811 * 179.97438 * 19 18 17 41 41 H 1.09003 * 109.47260 * 299.99264 * 22 21 20 42 42 H 1.09000 * 109.47475 * 59.99971 * 22 21 20 43 43 H 1.09004 * 109.47069 * 179.97438 * 26 25 23 44 44 H 1.09002 * 109.47004 * 300.00116 * 26 25 23 45 45 H 1.09002 * 109.46893 * 60.00140 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9988 1.3305 1.1325 5 6 3.4009 2.7067 1.4524 6 6 2.2063 3.4747 1.9567 7 1 1.2445 2.9892 2.0316 8 6 2.3412 4.7972 2.3224 9 7 3.5123 5.3886 2.2308 10 14 0.8607 5.7490 2.9481 11 1 0.7693 5.6082 4.4236 12 1 1.0097 7.1839 2.5960 13 1 -0.3740 5.2114 2.3222 14 6 4.1720 0.4879 0.8653 15 6 4.8634 0.1629 2.1643 16 6 6.0439 0.7990 2.4974 17 6 6.6782 0.5017 3.6891 18 6 6.1337 -0.4331 4.5505 19 6 4.9544 -1.0725 4.2217 20 6 4.3122 -0.7709 3.0293 21 8 3.1480 -1.3935 2.7068 22 6 2.6386 -2.3431 3.6453 23 6 1.3512 -2.9258 3.1216 24 8 0.9145 -2.5647 2.0545 25 8 0.6896 -3.8462 3.8407 26 6 -0.5435 -4.3633 3.2749 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3588 2.1316 0.0921 31 1 2.6193 1.4039 -0.9325 32 1 4.1732 2.6901 2.2214 33 1 3.7909 3.1890 0.5561 34 1 3.6073 6.3189 2.4884 35 1 4.8610 1.0215 0.2106 36 1 3.8536 -0.4358 0.3822 37 1 6.4713 1.5290 1.8261 38 1 7.6007 1.0003 3.9478 39 1 6.6310 -0.6633 5.4812 40 1 4.5298 -1.8028 4.8946 41 1 3.3677 -3.1409 3.7872 42 1 2.4517 -1.8479 4.5982 43 1 -0.9756 -5.0974 3.9551 44 1 -1.2477 -3.5442 3.1287 45 1 -0.3328 -4.8369 2.3160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894586139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:39 Heat of formation + Delta-G solvation = -58.793970 kcal Electronic energy + Delta-G solvation = -27570.298634 eV Core-core repulsion = 23747.684843 eV Total energy + Delta-G solvation = -3822.613791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67083 -39.81630 -37.50902 -36.65054 -36.29178 -33.02199 -32.54755 -30.92938 -30.25262 -29.13208 -27.25477 -27.00776 -25.65376 -23.73470 -22.47059 -21.57970 -20.85846 -20.18470 -18.88107 -18.12975 -17.26894 -16.95394 -16.84578 -16.33089 -15.56903 -15.41254 -15.36959 -14.76992 -14.57453 -14.10507 -13.91700 -13.76291 -13.39582 -13.31135 -13.00732 -12.71039 -12.32301 -12.19034 -12.04298 -11.99657 -11.76341 -11.32965 -11.09502 -10.97961 -10.95096 -10.94133 -10.67478 -10.60501 -10.53342 -10.27938 -10.04072 -9.76850 -9.11713 -8.59446 -8.53137 -8.35048 -7.82783 -7.06385 -5.95540 -3.95107 1.63875 1.76375 2.09670 2.12287 3.08441 3.36162 3.41734 3.46322 3.66297 4.06857 4.49859 4.56535 4.80892 4.91849 4.92819 5.02379 5.07033 5.08186 5.25190 5.32972 5.39789 5.46026 5.62173 5.67020 5.79963 5.89583 5.96760 6.03872 6.12396 6.18105 6.32740 6.39724 6.57156 6.60667 6.70052 6.75279 6.88152 7.08073 7.38239 7.42128 7.44950 7.57732 7.60510 7.69458 7.90841 8.20407 8.34825 8.66673 9.13149 9.68300 11.15388 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.005016 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.241131 B = 5581.091183 C = 7070.820297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C 0.085 3.915 4 N -0.519 5.519 5 C 0.192 3.808 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.099 3.901 15 C -0.083 4.083 16 C -0.069 4.069 17 C -0.155 4.155 18 C -0.088 4.088 19 C -0.217 4.217 20 C 0.149 3.851 21 O -0.273 6.273 22 C 0.069 3.931 23 C 0.459 3.541 24 O -0.467 6.467 25 O -0.361 6.361 26 C 0.039 3.961 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.025 0.975 32 H 0.034 0.966 33 H -0.012 1.012 34 H 0.259 0.741 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -18.947 3.147 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.132 4.132 3 C -0.043 4.043 4 N -0.243 5.243 5 C 0.067 3.933 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.029 4.029 15 C -0.084 4.084 16 C -0.088 4.088 17 C -0.173 4.173 18 C -0.107 4.107 19 C -0.236 4.236 20 C 0.103 3.897 21 O -0.186 6.186 22 C -0.007 4.007 23 C 0.299 3.701 24 O -0.350 6.350 25 O -0.279 6.279 26 C -0.055 4.055 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.005 0.995 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.438 -18.822 3.047 19.072 hybrid contribution -0.456 0.891 0.029 1.002 sum -0.018 -17.930 3.075 18.192 Atomic orbital electron populations 1.23536 0.96076 1.00417 1.04211 1.22890 0.95739 0.98147 0.96423 1.21182 0.95897 0.95834 0.91373 1.62065 1.12096 1.13524 1.36626 1.19774 0.96760 0.81568 0.95193 1.21178 0.95725 0.94902 1.42193 0.91974 1.24947 0.95844 0.97646 0.96060 1.69956 1.22864 1.12123 1.48984 0.86565 0.83156 0.78930 0.79171 1.20759 1.21384 1.19910 1.20848 0.92434 0.97861 0.91799 1.19209 0.95333 0.96250 0.97603 1.20953 0.93933 0.97138 0.96726 1.20976 1.01199 0.99960 0.95211 1.20786 0.95032 0.96032 0.98833 1.21110 0.99267 1.05639 0.97608 1.18645 0.84617 0.92972 0.93436 1.86211 1.36670 1.52656 1.43026 1.21762 0.91785 0.93583 0.93609 1.23020 0.85892 0.77602 0.83586 1.90760 1.66284 1.56503 1.21464 1.86426 1.37448 1.53803 1.50242 1.23272 0.83128 0.99260 0.99801 0.89604 0.89402 0.88110 0.89313 0.95752 0.94749 0.99455 0.93097 0.95015 0.91021 0.85484 0.86228 0.86295 0.85945 0.88349 0.87936 0.88034 0.91578 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.69 14.32 29.01 0.42 -3.28 16 2 C -0.11 -2.17 9.33 -36.02 -0.34 -2.50 16 3 C 0.08 1.79 5.24 -4.97 -0.03 1.77 16 4 N -0.52 -11.73 4.34 -238.97 -1.04 -12.77 16 5 C 0.19 5.09 4.55 -4.98 -0.02 5.07 16 6 C -0.50 -14.44 8.23 -34.44 -0.28 -14.72 16 7 H 0.06 1.81 7.31 -52.49 -0.38 1.43 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.10 1.90 4.55 -4.98 -0.02 1.88 16 15 C -0.08 -1.50 4.81 -104.47 -0.50 -2.00 16 16 C -0.07 -1.16 8.95 -39.61 -0.35 -1.51 16 17 C -0.16 -2.27 10.04 -39.56 -0.40 -2.66 16 18 C -0.09 -1.18 10.04 -39.61 -0.40 -1.58 16 19 C -0.22 -3.01 9.04 -39.43 -0.36 -3.36 16 20 C 0.15 2.48 6.66 -39.21 -0.26 2.22 16 21 O -0.27 -4.52 9.00 -39.39 -0.35 -4.87 16 22 C 0.07 0.84 5.33 36.01 0.19 1.03 16 23 C 0.46 6.09 8.03 36.01 0.29 6.38 16 24 O -0.47 -7.75 16.25 -25.48 -0.41 -8.17 16 25 O -0.36 -3.94 10.57 -39.26 -0.41 -4.35 16 26 C 0.04 0.32 10.56 101.05 1.07 1.39 16 27 H 0.09 1.44 8.06 -52.49 -0.42 1.01 16 28 H 0.09 1.59 7.84 -52.48 -0.41 1.17 16 29 H 0.10 1.92 7.27 -52.49 -0.38 1.54 16 30 H 0.09 2.06 6.23 -51.93 -0.32 1.74 16 31 H 0.02 0.49 8.00 -51.93 -0.42 0.08 16 32 H 0.03 0.97 6.81 -51.93 -0.35 0.62 16 33 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 36 H 0.07 1.31 6.68 -51.93 -0.35 0.97 16 37 H 0.13 2.07 8.00 -52.49 -0.42 1.65 16 38 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.12 1.30 6.30 -52.48 -0.33 0.96 16 41 H 0.10 0.87 7.65 -51.93 -0.40 0.47 16 42 H 0.10 1.10 7.68 -51.93 -0.40 0.70 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 45 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -33.84 382.04 -8.50 -42.34 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.66 Total: 1.49 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -1.09 Total: -10.38 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.30 Total: -39.04 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.18 Total: -17.39 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.84 -8.50 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894586139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.453 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds