Wall clock time and date at job start Tue Mar 31 2020 12:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99754 * 2 1 4 4 N 1.46902 * 109.46790 * 125.14956 * 3 2 1 5 5 C 1.46897 * 110.99827 * 199.68908 * 4 3 2 6 6 C 1.50704 * 109.47407 * 66.04228 * 5 4 3 7 7 H 1.08002 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00471 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99887 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00314 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46992 * 89.99914 * 10 8 6 12 12 H 1.48505 * 109.47186 * 210.00105 * 10 8 6 13 13 H 1.48497 * 109.47001 * 329.99886 * 10 8 6 14 14 C 1.46896 * 111.00208 * 75.73176 * 4 3 2 15 15 C 1.50697 * 109.46991 * 198.75600 * 14 4 3 16 16 C 1.38170 * 120.03270 * 255.26398 * 15 14 4 17 17 C 1.38239 * 120.05739 * 179.97438 * 16 15 14 18 18 C 1.38288 * 120.11196 * 0.02562 * 17 16 15 19 19 C 1.38119 * 120.05549 * 0.03051 * 18 17 16 20 20 C 1.38715 * 120.02649 * 74.99029 * 15 14 4 21 21 O 1.35902 * 120.05188 * 359.97438 * 20 15 14 22 22 C 1.42905 * 116.99307 * 180.02562 * 21 20 15 23 23 C 1.50699 * 109.46507 * 179.97438 * 22 21 20 24 24 O 1.20828 * 120.00424 * 359.97438 * 23 22 21 25 25 O 1.34232 * 120.00118 * 179.97438 * 23 22 21 26 26 C 1.45199 * 117.00428 * 179.97438 * 25 23 22 27 27 H 1.07997 * 120.00103 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99984 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99769 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47538 * 5.14438 * 3 2 1 31 31 H 1.09003 * 109.47222 * 245.14194 * 3 2 1 32 32 H 1.09001 * 109.47313 * 186.04510 * 5 4 3 33 33 H 1.08999 * 109.47485 * 306.04482 * 5 4 3 34 34 H 0.96999 * 120.00291 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46678 * 78.76198 * 14 4 3 36 36 H 1.08991 * 109.47587 * 318.75895 * 14 4 3 37 37 H 1.07997 * 119.96770 * 359.97438 * 16 15 14 38 38 H 1.08005 * 119.94487 * 180.02562 * 17 16 15 39 39 H 1.08002 * 119.97058 * 180.02562 * 18 17 16 40 40 H 1.08005 * 120.02811 * 179.97438 * 19 18 17 41 41 H 1.09003 * 109.47260 * 299.99264 * 22 21 20 42 42 H 1.09000 * 109.47475 * 59.99971 * 22 21 20 43 43 H 1.09004 * 109.47069 * 179.97438 * 26 25 23 44 44 H 1.09002 * 109.47004 * 300.00116 * 26 25 23 45 45 H 1.09002 * 109.46893 * 60.00140 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9988 1.3305 1.1325 5 6 3.4009 2.7067 1.4524 6 6 2.2063 3.4747 1.9567 7 1 1.2445 2.9892 2.0316 8 6 2.3412 4.7972 2.3224 9 7 3.5123 5.3886 2.2308 10 14 0.8607 5.7490 2.9481 11 1 0.7693 5.6082 4.4236 12 1 1.0097 7.1839 2.5960 13 1 -0.3740 5.2114 2.3222 14 6 4.1720 0.4879 0.8653 15 6 4.8634 0.1629 2.1643 16 6 6.0439 0.7990 2.4974 17 6 6.6782 0.5017 3.6891 18 6 6.1337 -0.4331 4.5505 19 6 4.9544 -1.0725 4.2217 20 6 4.3122 -0.7709 3.0293 21 8 3.1480 -1.3935 2.7068 22 6 2.6386 -2.3431 3.6453 23 6 1.3512 -2.9258 3.1216 24 8 0.9145 -2.5647 2.0545 25 8 0.6896 -3.8462 3.8407 26 6 -0.5435 -4.3633 3.2749 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3588 2.1316 0.0921 31 1 2.6193 1.4039 -0.9325 32 1 4.1732 2.6901 2.2214 33 1 3.7909 3.1890 0.5561 34 1 3.6073 6.3189 2.4884 35 1 4.8610 1.0215 0.2106 36 1 3.8536 -0.4358 0.3822 37 1 6.4713 1.5290 1.8261 38 1 7.6007 1.0003 3.9478 39 1 6.6310 -0.6633 5.4812 40 1 4.5298 -1.8028 4.8946 41 1 3.3677 -3.1409 3.7872 42 1 2.4517 -1.8479 4.5982 43 1 -0.9756 -5.0974 3.9551 44 1 -1.2477 -3.5442 3.1287 45 1 -0.3328 -4.8369 2.3160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894586139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:39 Heat of formation + Delta-G solvation = -78.846275 kcal Electronic energy + Delta-G solvation = -27571.168167 eV Core-core repulsion = 23747.684843 eV Total energy + Delta-G solvation = -3823.483324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68888 -40.93209 -38.86284 -38.08440 -37.32704 -34.94489 -34.26692 -32.37968 -31.32026 -30.20103 -29.17089 -27.85750 -27.14783 -25.64937 -23.57160 -23.08195 -21.94742 -21.73551 -20.44588 -19.21134 -18.52134 -18.29544 -17.89948 -17.83670 -16.94181 -16.71808 -16.48863 -16.33087 -16.12228 -15.66411 -15.41872 -15.04712 -14.58681 -14.55537 -14.29359 -14.03048 -13.76570 -13.71344 -13.38846 -13.29546 -13.10974 -12.92062 -12.76991 -12.63195 -12.48083 -12.18715 -12.01572 -11.99990 -11.84700 -11.79668 -11.53338 -11.38630 -11.21761 -10.59292 -10.16084 -9.72216 -9.01227 -8.90174 -8.18196 -6.26743 0.45934 0.59784 1.12318 1.21433 1.38258 1.39523 1.50600 1.55640 2.40295 2.65985 2.88138 3.13859 3.58008 3.68433 3.87950 4.01065 4.04455 4.10989 4.16685 4.26525 4.33200 4.35792 4.37561 4.42667 4.45864 4.55987 4.65564 4.69456 4.72717 4.87451 4.91938 5.06024 5.14709 5.25007 5.30670 5.32133 5.44871 5.56154 5.67491 5.69946 5.87858 5.93879 6.06039 6.09876 6.41397 6.48283 6.68842 6.73037 6.88950 7.41779 8.92595 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.005016 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.241131 B = 5581.091183 C = 7070.820297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 C 0.088 3.912 4 N -0.522 5.522 5 C 0.213 3.787 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.279 1.279 13 H -0.269 1.269 14 C 0.105 3.895 15 C -0.119 4.119 16 C -0.089 4.089 17 C -0.162 4.162 18 C -0.081 4.081 19 C -0.212 4.212 20 C 0.137 3.863 21 O -0.302 6.302 22 C 0.062 3.938 23 C 0.461 3.539 24 O -0.509 6.509 25 O -0.356 6.356 26 C 0.032 3.968 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.013 0.987 33 H -0.044 1.044 34 H 0.264 0.736 35 H 0.024 0.976 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.137 0.863 42 H 0.120 0.880 43 H 0.137 0.863 44 H 0.056 0.944 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -20.699 5.532 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.137 4.137 3 C -0.040 4.040 4 N -0.246 5.246 5 C 0.087 3.913 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.199 1.199 12 H -0.205 1.205 13 H -0.193 1.193 14 C -0.023 4.023 15 C -0.120 4.120 16 C -0.108 4.108 17 C -0.180 4.180 18 C -0.099 4.099 19 C -0.230 4.230 20 C 0.092 3.908 21 O -0.215 6.215 22 C -0.014 4.014 23 C 0.303 3.697 24 O -0.396 6.396 25 O -0.273 6.273 26 C -0.061 4.061 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.031 0.969 33 H -0.026 1.026 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.155 0.845 42 H 0.138 0.862 43 H 0.155 0.845 44 H 0.075 0.925 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.248 -20.609 5.443 21.317 hybrid contribution -0.254 1.329 -0.682 1.515 sum -0.502 -19.280 4.761 19.866 Atomic orbital electron populations 1.23655 0.95634 1.01168 1.02228 1.22661 0.95967 0.96871 0.98198 1.21118 0.95418 0.96293 0.91169 1.62028 1.13579 1.11383 1.37596 1.19359 0.95405 0.83523 0.92999 1.21399 0.95903 0.95686 1.42700 0.92804 1.25794 0.98820 0.98519 0.96000 1.70075 1.24901 1.12595 1.49536 0.85499 0.79490 0.77586 0.78753 1.19893 1.20465 1.19321 1.20805 0.91155 0.97079 0.93227 1.19215 0.96439 0.98484 0.97852 1.21020 0.94321 0.97482 0.97986 1.21287 1.01890 1.00438 0.94422 1.21278 0.94586 0.94424 0.99589 1.21543 0.98954 1.05749 0.96758 1.18771 0.84984 0.92886 0.94163 1.86146 1.36744 1.53699 1.44912 1.22124 0.92081 0.94065 0.93138 1.23342 0.86076 0.77292 0.83004 1.90737 1.67443 1.58092 1.23314 1.86430 1.38128 1.52930 1.49771 1.23564 0.81978 0.99596 1.00982 0.87796 0.89518 0.87856 0.91793 0.95396 0.96869 1.02610 0.92757 0.95795 0.90361 0.86709 0.84167 0.82390 0.82107 0.84538 0.86205 0.84499 0.92469 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.76 14.32 67.78 0.97 -5.79 16 2 C -0.12 -4.59 9.33 25.65 0.24 -4.36 16 3 C 0.09 3.87 5.24 85.56 0.45 4.32 16 4 N -0.52 -24.70 4.34 -909.96 -3.95 -28.65 16 5 C 0.21 11.93 4.55 85.56 0.39 12.32 16 6 C -0.52 -30.82 8.23 25.60 0.21 -30.61 16 7 H 0.05 3.23 7.31 -2.91 -0.02 3.20 16 8 C 0.01 0.40 5.46 84.65 0.46 0.86 16 9 N -0.93 -57.09 13.29 21.44 0.28 -56.80 16 10 Si 0.96 45.92 29.54 68.60 2.03 47.94 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 C 0.10 4.27 4.55 85.56 0.39 4.66 16 15 C -0.12 -4.43 4.81 -19.77 -0.09 -4.53 16 16 C -0.09 -3.11 8.95 22.25 0.20 -2.91 16 17 C -0.16 -4.55 10.04 22.28 0.22 -4.33 16 18 C -0.08 -1.90 10.04 22.25 0.22 -1.68 16 19 C -0.21 -5.21 9.04 22.36 0.20 -5.01 16 20 C 0.14 4.47 6.66 22.51 0.15 4.62 16 21 O -0.30 -9.74 9.00 -73.37 -0.66 -10.40 16 22 C 0.06 1.34 5.33 71.24 0.38 1.72 16 23 C 0.46 11.53 8.03 71.24 0.57 12.10 16 24 O -0.51 -16.67 16.25 28.39 0.46 -16.21 16 25 O -0.36 -6.95 10.57 -51.43 -0.54 -7.50 16 26 C 0.03 0.46 10.56 113.37 1.20 1.66 16 27 H 0.10 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.09 3.12 7.84 -2.91 -0.02 3.09 16 29 H 0.10 3.99 7.27 -2.91 -0.02 3.97 16 30 H 0.06 3.11 6.23 -2.39 -0.01 3.09 16 31 H 0.03 1.19 8.00 -2.39 -0.02 1.17 16 32 H 0.01 0.79 6.81 -2.39 -0.02 0.77 16 33 H -0.04 -2.65 8.12 -2.39 -0.02 -2.67 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.02 0.98 7.82 -2.39 -0.02 0.96 16 36 H 0.08 3.01 6.68 -2.39 -0.02 2.99 16 37 H 0.11 4.07 8.00 -2.91 -0.02 4.05 16 38 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.16 2.61 6.30 -2.91 -0.02 2.59 16 41 H 0.14 1.88 7.65 -2.39 -0.02 1.86 16 42 H 0.12 2.18 7.68 -2.39 -0.02 2.16 16 43 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 45 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 Total: -1.00 -75.75 382.04 4.75 -70.99 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.97 Total: 17.57 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 6.16 Total: -16.95 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -3.66 Total: -85.45 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.74 Total: -34.11 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -75.75 4.75 -70.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894586139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.851 kcal (2) G-P(sol) polarization free energy of solvation -75.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds