Wall clock time and date at job start Tue Mar 31 2020 12:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34239 * 116.99786 * 2 1 4 4 O 1.20818 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99717 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.50693 * 109.47512 * 180.02562 * 6 5 3 8 8 C 1.37983 * 120.07901 * 98.58642 * 7 6 5 9 9 C 1.38335 * 120.14413 * 180.02562 * 8 7 6 10 10 C 1.38380 * 120.29515 * 0.02562 * 9 8 7 11 11 C 1.37932 * 120.14640 * 0.02562 * 10 9 8 12 12 C 1.39560 * 120.06927 * 278.31750 * 7 6 5 13 13 C 1.47839 * 120.14963 * 359.97438 * 12 7 6 14 14 O 1.21561 * 119.99481 * 5.43238 * 13 12 7 15 15 N 1.34776 * 120.00562 * 185.43249 * 13 12 7 16 16 C 1.46497 * 119.99970 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.47051 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47144 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47192 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00029 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00313 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00008 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00023 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46621 * 90.00343 * 23 21 19 25 25 H 1.48491 * 109.47562 * 210.00374 * 23 21 19 26 26 H 1.48506 * 109.47008 * 330.00994 * 23 21 19 27 27 H 1.09005 * 109.46998 * 299.99469 * 1 2 3 28 28 H 1.08997 * 109.46887 * 59.99937 * 1 2 3 29 29 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47010 * 60.00363 * 5 3 2 31 31 H 1.08999 * 109.47578 * 300.00102 * 5 3 2 32 32 H 1.08996 * 109.46967 * 59.99879 * 6 5 3 33 33 H 1.09004 * 109.47362 * 300.00229 * 6 5 3 34 34 H 1.07992 * 119.92421 * 0.02793 * 8 7 6 35 35 H 1.08007 * 119.84891 * 179.97438 * 9 8 7 36 36 H 1.08004 * 119.92410 * 179.97438 * 10 9 8 37 37 H 1.07997 * 120.07509 * 179.97438 * 11 10 9 38 38 H 0.97001 * 119.99753 * 0.02562 * 15 13 12 39 39 H 1.08998 * 109.47363 * 300.00183 * 16 15 13 40 40 H 1.09002 * 109.47213 * 60.00030 * 16 15 13 41 41 H 1.08998 * 109.47163 * 300.00276 * 17 16 15 42 42 H 1.09003 * 109.46875 * 60.00435 * 17 16 15 43 43 H 1.08998 * 109.47390 * 300.00227 * 18 17 16 44 44 H 1.09002 * 109.47092 * 60.00017 * 18 17 16 45 45 H 0.97004 * 119.99731 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7421 0.0011 7 6 5.5050 2.8211 0.0011 8 6 6.1862 3.0358 -1.1795 9 6 7.5676 3.1080 -1.1812 10 6 8.2756 2.9651 -0.0008 11 6 7.6069 2.7491 1.1861 12 6 6.2125 2.6828 1.1960 13 6 5.4890 2.4591 2.4657 14 8 4.2843 2.2966 2.4582 15 7 6.1649 2.4353 3.6315 16 6 5.4477 2.2141 4.8896 17 6 6.4411 2.2341 6.0532 18 6 5.6920 2.0037 7.3672 19 6 6.6703 2.0240 8.5133 20 1 7.7212 2.1846 8.3234 21 6 6.2238 1.8364 9.8042 22 7 7.0776 1.8546 10.8045 23 14 4.4061 1.5578 10.1327 24 1 4.1117 0.1031 10.0838 25 1 4.0587 2.0883 11.4754 26 1 3.6031 2.2603 9.0997 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9564 0.7807 -0.8892 31 1 3.9558 0.7810 0.8908 32 1 3.6100 3.2360 0.8910 33 1 3.6107 3.2365 -0.8889 34 1 5.6396 3.1478 -2.1042 35 1 8.0960 3.2758 -2.1081 36 1 9.3541 3.0221 -0.0091 37 1 8.1606 2.6373 2.1066 38 1 7.1261 2.5653 3.6375 39 1 4.7085 3.0027 5.0299 40 1 4.9457 1.2472 4.8565 41 1 7.1807 1.4457 5.9131 42 1 6.9427 3.2012 6.0861 43 1 4.9527 2.7923 7.5071 44 1 5.1900 1.0367 7.3346 45 1 6.7634 1.7230 11.7127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900573178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:24 Heat of formation + Delta-G solvation = -134.053283 kcal Electronic energy + Delta-G solvation = -25945.222952 eV Core-core repulsion = 22119.345672 eV Total energy + Delta-G solvation = -3825.877280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73493 -41.21423 -39.33712 -37.67491 -37.07747 -35.46599 -34.74696 -33.47593 -31.99658 -31.21463 -29.01717 -28.57113 -26.01404 -25.03565 -24.07670 -22.50079 -22.21943 -21.62230 -21.14348 -19.09758 -18.80664 -18.44226 -17.67247 -17.61388 -17.16143 -16.71313 -16.47555 -16.30284 -16.05988 -15.68221 -15.50482 -14.94608 -14.78184 -14.68151 -14.32808 -14.12578 -13.82726 -13.76503 -13.67984 -13.55120 -13.11419 -12.77831 -12.73235 -12.72717 -12.58773 -12.18266 -11.94315 -11.90751 -11.82657 -11.75781 -11.59713 -11.57686 -11.34095 -10.77127 -10.65112 -10.17546 -9.85610 -9.68676 -8.30426 -6.34115 -0.10604 0.39784 1.16087 1.35496 1.37501 1.49015 1.78984 1.89583 2.17970 2.35206 2.88749 3.05418 3.64342 3.71413 3.84582 3.91887 4.07669 4.12259 4.18984 4.22750 4.25009 4.28847 4.30671 4.47620 4.47719 4.53504 4.58287 4.67486 4.85727 4.87339 4.88474 4.92196 5.02470 5.07051 5.17593 5.34704 5.38961 5.41926 5.50997 5.54185 5.54384 5.60265 5.64396 5.98131 6.26536 6.54850 6.70055 6.74021 7.21110 7.30794 8.85996 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.002971 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.627342 B = 9421.196788 C =11823.039341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.465 3.535 4 O -0.541 6.541 5 C -0.092 4.092 6 C -0.068 4.068 7 C -0.039 4.039 8 C -0.126 4.126 9 C -0.085 4.085 10 C -0.128 4.128 11 C -0.087 4.087 12 C -0.151 4.151 13 C 0.545 3.455 14 O -0.566 6.566 15 N -0.714 5.714 16 C 0.129 3.871 17 C -0.100 4.100 18 C -0.012 4.012 19 C -0.530 4.530 20 H 0.039 0.961 21 C 0.006 3.994 22 N -0.950 5.950 23 Si 0.946 3.054 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.250 1.250 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.411 0.589 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.019 0.981 44 H 0.020 0.980 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -1.210 -31.374 31.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.310 3.690 4 O -0.431 6.431 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.040 4.040 8 C -0.143 4.143 9 C -0.103 4.103 10 C -0.146 4.146 11 C -0.106 4.106 12 C -0.154 4.154 13 C 0.335 3.665 14 O -0.447 6.447 15 N -0.365 5.365 16 C 0.005 3.995 17 C -0.138 4.138 18 C -0.050 4.050 19 C -0.568 4.568 20 H 0.057 0.943 21 C -0.191 4.191 22 N -0.591 5.591 23 Si 0.769 3.231 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.174 1.174 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.168 0.832 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.249 0.751 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.038 0.962 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.587 -1.062 -31.157 31.381 hybrid contribution -0.461 0.070 1.205 1.292 sum -4.048 -0.991 -29.952 30.240 Atomic orbital electron populations 1.23520 0.75065 1.05625 1.02331 1.86505 1.24916 1.33185 1.83877 1.24210 0.92971 0.80975 0.70794 1.90629 1.68117 1.37370 1.46966 1.21279 0.85890 0.99387 1.06327 1.20435 0.91160 0.95099 1.03853 1.19897 0.94941 0.96588 0.92555 1.21335 0.95141 1.00569 0.97290 1.21765 0.93747 0.95252 0.99529 1.21492 1.01742 0.99597 0.91777 1.21571 0.92032 0.96699 1.00268 1.19773 0.94677 1.08628 0.92350 1.18790 0.86877 0.76373 0.84488 1.90731 1.15397 1.51049 1.87554 1.45933 1.12233 1.72558 1.05817 1.21298 0.95006 1.00925 0.82295 1.21483 0.97639 1.02104 0.92598 1.19461 0.95821 0.96671 0.93041 1.21460 0.94921 1.48654 0.91767 0.94288 1.25963 1.02608 0.94512 0.96044 1.70057 1.36854 1.52111 1.00046 0.85721 0.80126 0.79344 0.77860 1.19158 1.21008 1.17355 0.92872 0.91446 0.85037 0.85371 0.88150 0.90757 0.90106 0.83198 0.82380 0.82689 0.84133 0.75108 0.92650 0.92142 0.91492 0.91784 0.96296 0.96199 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.37 -8.50 10.57 -51.50 -0.54 -9.04 16 3 C 0.47 12.12 7.96 71.24 0.57 12.68 16 4 O -0.54 -17.16 15.73 21.99 0.35 -16.82 16 5 C -0.09 -1.98 5.32 29.85 0.16 -1.82 16 6 C -0.07 -1.56 3.90 29.85 0.12 -1.44 16 7 C -0.04 -0.75 5.17 -19.61 -0.10 -0.86 16 8 C -0.13 -1.64 9.66 22.23 0.21 -1.42 16 9 C -0.08 -0.84 10.04 22.33 0.22 -0.62 16 10 C -0.13 -1.42 10.03 22.23 0.22 -1.20 16 11 C -0.09 -1.35 9.53 22.53 0.21 -1.14 16 12 C -0.15 -3.23 5.87 -20.09 -0.12 -3.34 16 13 C 0.55 15.09 7.64 86.78 0.66 15.75 16 14 O -0.57 -19.23 11.59 -3.91 -0.05 -19.28 16 15 N -0.71 -18.59 5.51 -465.97 -2.57 -21.16 16 16 C 0.13 4.09 5.67 86.38 0.49 4.58 16 17 C -0.10 -3.61 5.27 30.59 0.16 -3.44 16 18 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 19 C -0.53 -30.08 9.66 25.60 0.25 -29.83 16 20 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 21 C 0.01 0.33 5.47 84.65 0.46 0.79 16 22 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 23 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 27 H 0.05 1.01 8.13 -2.38 -0.02 0.99 16 28 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 2.50 6.57 -2.39 -0.02 2.49 16 32 H 0.07 2.28 5.92 -2.39 -0.01 2.26 16 33 H 0.08 1.62 7.98 -2.38 -0.02 1.60 16 34 H 0.15 1.27 8.04 -2.91 -0.02 1.24 16 35 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 36 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 37 H 0.14 1.72 6.45 -2.91 -0.02 1.70 16 38 H 0.41 8.38 6.54 -92.71 -0.61 7.77 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 43 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 44 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -76.87 375.15 4.55 -72.32 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.34 Total: 16.62 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.84 Total: -10.07 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.27 Total: -80.25 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.24 Total: -45.14 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -76.87 4.55 -72.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900573178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.733 kcal (2) G-P(sol) polarization free energy of solvation -76.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds