Wall clock time and date at job start Tue Mar 31 2020 12:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99945 * 2 1 4 4 O 1.20825 * 120.00146 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00285 * 179.97438 * 3 2 1 6 6 O 1.42896 * 109.47697 * 180.02562 * 5 3 2 7 7 C 1.35898 * 117.00399 * 180.02562 * 6 5 3 8 8 C 1.38762 * 120.05455 * 359.97438 * 7 6 5 9 9 C 1.38117 * 119.94160 * 180.02562 * 8 7 6 10 10 C 1.38283 * 120.05986 * 359.97438 * 9 8 7 11 11 C 1.38247 * 120.11273 * 0.02562 * 10 9 8 12 12 C 1.38169 * 120.05180 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.02373 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.47216 * 259.94869 * 13 12 11 15 15 C 1.46897 * 111.00453 * 180.02562 * 14 13 12 16 16 C 1.52991 * 109.47355 * 185.35678 * 15 14 13 17 17 C 1.50707 * 115.55183 * 65.05282 * 16 15 14 18 18 H 1.07997 * 119.99402 * 265.43398 * 17 16 15 19 19 C 1.37875 * 119.99947 * 85.43507 * 17 16 15 20 20 N 1.31506 * 120.00255 * 353.58998 * 19 17 16 21 21 Si 1.86803 * 119.99372 * 173.58888 * 19 17 16 22 22 H 1.48500 * 109.47153 * 90.00288 * 21 19 17 23 23 H 1.48504 * 109.46780 * 209.99807 * 21 19 17 24 24 H 1.48497 * 109.47526 * 329.99767 * 21 19 17 25 25 C 1.52999 * 117.50021 * 279.37616 * 16 15 14 26 26 C 1.53007 * 117.49711 * 210.71560 * 16 15 14 27 27 H 1.08997 * 109.47554 * 300.00111 * 1 2 3 28 28 H 1.09008 * 109.47445 * 60.00144 * 1 2 3 29 29 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.47032 * 59.99744 * 5 3 2 31 31 H 1.08999 * 109.46961 * 300.00769 * 5 3 2 32 32 H 1.07995 * 120.02599 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.96886 * 179.97438 * 9 8 7 34 34 H 1.08003 * 119.94727 * 179.74198 * 10 9 8 35 35 H 1.07998 * 119.97162 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.47185 * 19.95054 * 13 12 11 37 37 H 1.09002 * 109.46829 * 139.95543 * 13 12 11 38 38 H 1.00901 * 111.00224 * 303.95783 * 14 13 12 39 39 H 1.09008 * 109.46605 * 305.36063 * 15 14 13 40 40 H 1.08994 * 109.47126 * 65.35011 * 15 14 13 41 41 H 0.97007 * 120.00009 * 180.02562 * 20 19 17 42 42 H 1.09007 * 117.49719 * 0.02562 * 25 16 15 43 43 H 1.08997 * 117.50120 * 145.02176 * 25 16 15 44 44 H 1.08996 * 117.49792 * 214.97651 * 26 16 15 45 45 H 1.08998 * 117.49779 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 8 3.9714 2.6452 0.0011 7 6 5.3075 2.8936 0.0011 8 6 6.2103 1.8397 0.0012 9 6 7.5677 2.0948 0.0017 10 6 8.0274 3.3990 0.0017 11 6 7.1301 4.4507 0.0016 12 6 5.7712 4.2009 0.0021 13 6 4.7936 5.3478 0.0014 14 7 4.2923 5.5647 1.3651 15 6 3.3341 6.6775 1.4030 16 6 2.9370 6.9594 2.8533 17 6 4.0452 7.4557 3.7459 18 1 4.6044 6.7576 4.3513 19 6 4.3451 8.8007 3.7898 20 7 3.7525 9.6338 2.9626 21 14 5.5931 9.4395 5.0243 22 1 6.9484 9.4108 4.4180 23 1 5.2484 10.8342 5.4000 24 1 5.5746 8.5814 6.2361 25 6 1.8732 6.0577 3.4826 26 6 1.5289 7.5013 3.1076 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9564 0.7805 -0.8892 31 1 3.9556 0.7809 0.8908 32 1 5.8518 0.8210 0.0008 33 1 8.2707 1.2750 0.0022 34 1 9.0892 3.5964 0.0063 35 1 7.4916 5.4684 0.0019 36 1 5.2930 6.2506 -0.3501 37 1 3.9590 5.1134 -0.6594 38 1 3.8819 4.7217 1.7379 39 1 3.7935 7.5673 0.9724 40 1 2.4467 6.4126 0.8282 41 1 3.9638 10.5801 2.9933 42 1 1.4565 5.2632 2.8633 43 1 1.9746 5.8235 4.5422 44 1 1.4040 8.2163 3.9208 45 1 0.8856 7.6573 2.2416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922085355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:30 Heat of formation + Delta-G solvation = -61.489827 kcal Electronic energy + Delta-G solvation = -26783.500581 eV Core-core repulsion = 22960.769889 eV Total energy + Delta-G solvation = -3822.730692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91963 -40.07380 -37.65503 -36.83579 -36.55649 -34.46595 -31.74421 -31.11051 -30.52006 -29.33132 -27.25176 -26.22258 -25.11831 -23.06071 -22.75875 -21.33385 -21.04757 -20.76673 -18.87586 -18.42856 -17.53753 -17.18612 -17.06578 -16.24177 -15.73002 -15.62464 -15.47349 -14.63927 -14.34451 -14.28018 -13.94806 -13.92174 -13.46144 -13.32382 -13.20466 -12.92887 -12.57477 -12.44409 -12.29811 -11.69258 -11.63404 -11.29969 -11.17364 -11.11623 -11.05291 -10.84138 -10.79630 -10.56060 -10.55469 -10.32767 -10.03606 -9.34355 -8.83879 -8.65094 -8.25506 -8.19546 -7.90180 -7.33938 -5.84613 -3.85252 1.37757 1.45463 1.87122 1.88854 3.36899 3.41124 3.46989 3.51458 3.79097 4.33818 4.56714 4.58406 4.65618 4.80103 4.81318 4.82997 4.91000 5.08100 5.21120 5.23304 5.38290 5.43562 5.45926 5.63750 5.66662 5.87523 5.98844 6.00376 6.25029 6.28841 6.33786 6.48087 6.52571 6.64160 6.70017 6.77490 6.84597 6.89173 7.02749 7.24963 7.25975 7.45217 7.60610 7.73048 8.07938 8.11504 8.34278 8.69753 9.13412 9.76857 11.25406 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.004018 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.460699 B = 6966.430131 C = 9020.197035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.459 3.541 4 O -0.473 6.473 5 C 0.071 3.929 6 O -0.291 6.291 7 C 0.128 3.872 8 C -0.211 4.211 9 C -0.089 4.089 10 C -0.153 4.153 11 C -0.062 4.062 12 C -0.088 4.088 13 C 0.102 3.898 14 N -0.660 5.660 15 C 0.108 3.892 16 C 0.053 3.947 17 C -0.465 4.465 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.216 4.216 26 C -0.158 4.158 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.332 0.668 39 H 0.075 0.925 40 H -0.005 1.005 41 H 0.256 0.744 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -20.581 -9.623 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.300 3.700 4 O -0.358 6.358 5 C -0.006 4.006 6 O -0.204 6.204 7 C 0.083 3.917 8 C -0.230 4.230 9 C -0.107 4.107 10 C -0.172 4.172 11 C -0.081 4.081 12 C -0.089 4.089 13 C -0.027 4.027 14 N -0.290 5.290 15 C -0.020 4.020 16 C 0.053 3.947 17 C -0.503 4.503 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.201 1.201 25 C -0.253 4.253 26 C -0.196 4.196 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.149 0.851 39 H 0.093 0.907 40 H 0.013 0.987 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.725 -19.517 -9.488 21.770 hybrid contribution -0.275 -0.176 0.249 0.411 sum 1.450 -19.693 -9.239 21.801 Atomic orbital electron populations 1.23331 0.75303 1.03891 1.03084 1.86419 1.24081 1.32497 1.84618 1.23003 0.91048 0.82005 0.73992 1.90784 1.66503 1.36022 1.42450 1.21800 0.88915 0.84607 1.05250 1.86111 1.21179 1.23931 1.89197 1.18808 0.81013 0.93907 0.97995 1.21125 0.94191 0.97772 1.09907 1.20844 0.94471 0.96903 0.98470 1.21075 0.99742 0.92572 1.03772 1.20987 0.91254 0.99777 0.96048 1.19353 0.94864 0.91569 1.03141 1.20732 0.95158 0.94636 0.92144 1.60416 1.42059 1.09020 1.17466 1.21527 0.90805 0.92671 0.97025 1.18813 0.88388 0.95995 0.91535 1.20303 1.15599 0.91621 1.22811 0.92375 1.24926 0.95997 0.96998 0.95555 1.70018 1.43064 1.03036 1.36351 0.86684 0.81857 0.77866 0.82055 1.20821 1.21556 1.20081 1.22980 1.09280 0.93086 0.99962 1.22504 1.01418 0.94382 1.01319 0.91437 0.91646 0.87747 0.87831 0.87581 0.85712 0.86033 0.85953 0.84890 0.90569 0.95014 0.85071 0.90682 0.98689 0.93447 0.92134 0.90709 0.90157 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.48 10.57 -39.24 -0.41 -3.90 16 3 C 0.46 5.54 8.03 36.00 0.29 5.83 16 4 O -0.47 -7.78 16.25 -25.48 -0.41 -8.19 16 5 C 0.07 0.71 5.33 36.00 0.19 0.90 16 6 O -0.29 -4.19 8.85 -39.37 -0.35 -4.54 16 7 C 0.13 1.79 6.66 -39.21 -0.26 1.53 16 8 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 9 C -0.09 -0.94 10.04 -39.61 -0.40 -1.33 16 10 C -0.15 -1.79 10.04 -39.56 -0.40 -2.18 16 11 C -0.06 -0.87 9.67 -39.60 -0.38 -1.25 16 12 C -0.09 -1.38 5.41 -104.47 -0.56 -1.95 16 13 C 0.10 1.86 5.47 -4.98 -0.03 1.83 16 14 N -0.66 -14.16 6.37 -115.06 -0.73 -14.89 16 15 C 0.11 2.61 5.51 -3.83 -0.02 2.59 16 16 C 0.05 1.39 1.55 -155.66 -0.24 1.14 16 17 C -0.47 -13.18 8.74 -34.44 -0.30 -13.48 16 18 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 19 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 20 N -0.89 -25.89 12.92 55.43 0.72 -25.18 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.22 -5.09 9.96 -26.69 -0.27 -5.36 16 26 C -0.16 -3.97 9.41 -26.69 -0.25 -4.22 16 27 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.06 0.49 8.13 -51.92 -0.42 0.07 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.72 7.66 -51.92 -0.40 0.33 16 31 H 0.11 0.82 7.66 -51.93 -0.40 0.42 16 32 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 35 H 0.13 1.77 8.04 -52.49 -0.42 1.35 16 36 H 0.08 1.36 8.00 -51.93 -0.42 0.95 16 37 H 0.03 0.59 7.85 -51.93 -0.41 0.18 16 38 H 0.33 7.13 8.73 -39.29 -0.34 6.79 16 39 H 0.07 1.97 8.13 -51.92 -0.42 1.55 16 40 H 0.00 -0.12 8.09 -51.93 -0.42 -0.54 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 44 H 0.08 2.12 8.14 -51.93 -0.42 1.69 16 45 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -33.55 386.30 -9.32 -42.87 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.91 Total: 6.56 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.02 Total: -15.51 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.02 Total: -40.07 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -1.18 Total: -16.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.55 -9.32 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922085355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.619 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds