Wall clock time and date at job start Tue Mar 31 2020 12:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99945 * 2 1 4 4 O 1.20825 * 120.00146 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00285 * 179.97438 * 3 2 1 6 6 O 1.42896 * 109.47697 * 180.02562 * 5 3 2 7 7 C 1.35898 * 117.00399 * 180.02562 * 6 5 3 8 8 C 1.38762 * 120.05455 * 359.97438 * 7 6 5 9 9 C 1.38117 * 119.94160 * 180.02562 * 8 7 6 10 10 C 1.38283 * 120.05986 * 359.97438 * 9 8 7 11 11 C 1.38247 * 120.11273 * 0.02562 * 10 9 8 12 12 C 1.38169 * 120.05180 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.02373 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.47216 * 259.94869 * 13 12 11 15 15 C 1.46897 * 111.00453 * 180.02562 * 14 13 12 16 16 C 1.52991 * 109.47355 * 185.35678 * 15 14 13 17 17 C 1.50707 * 115.55183 * 65.05282 * 16 15 14 18 18 H 1.07997 * 119.99402 * 265.43398 * 17 16 15 19 19 C 1.37875 * 119.99947 * 85.43507 * 17 16 15 20 20 N 1.31506 * 120.00255 * 353.58998 * 19 17 16 21 21 Si 1.86803 * 119.99372 * 173.58888 * 19 17 16 22 22 H 1.48500 * 109.47153 * 90.00288 * 21 19 17 23 23 H 1.48504 * 109.46780 * 209.99807 * 21 19 17 24 24 H 1.48497 * 109.47526 * 329.99767 * 21 19 17 25 25 C 1.52999 * 117.50021 * 279.37616 * 16 15 14 26 26 C 1.53007 * 117.49711 * 210.71560 * 16 15 14 27 27 H 1.08997 * 109.47554 * 300.00111 * 1 2 3 28 28 H 1.09008 * 109.47445 * 60.00144 * 1 2 3 29 29 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.47032 * 59.99744 * 5 3 2 31 31 H 1.08999 * 109.46961 * 300.00769 * 5 3 2 32 32 H 1.07995 * 120.02599 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.96886 * 179.97438 * 9 8 7 34 34 H 1.08003 * 119.94727 * 179.74198 * 10 9 8 35 35 H 1.07998 * 119.97162 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.47185 * 19.95054 * 13 12 11 37 37 H 1.09002 * 109.46829 * 139.95543 * 13 12 11 38 38 H 1.00901 * 111.00224 * 303.95783 * 14 13 12 39 39 H 1.09008 * 109.46605 * 305.36063 * 15 14 13 40 40 H 1.08994 * 109.47126 * 65.35011 * 15 14 13 41 41 H 0.97007 * 120.00009 * 180.02562 * 20 19 17 42 42 H 1.09007 * 117.49719 * 0.02562 * 25 16 15 43 43 H 1.08997 * 117.50120 * 145.02176 * 25 16 15 44 44 H 1.08996 * 117.49792 * 214.97651 * 26 16 15 45 45 H 1.08998 * 117.49779 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 8 3.9714 2.6452 0.0011 7 6 5.3075 2.8936 0.0011 8 6 6.2103 1.8397 0.0012 9 6 7.5677 2.0948 0.0017 10 6 8.0274 3.3990 0.0017 11 6 7.1301 4.4507 0.0016 12 6 5.7712 4.2009 0.0021 13 6 4.7936 5.3478 0.0014 14 7 4.2923 5.5647 1.3651 15 6 3.3341 6.6775 1.4030 16 6 2.9370 6.9594 2.8533 17 6 4.0452 7.4557 3.7459 18 1 4.6044 6.7576 4.3513 19 6 4.3451 8.8007 3.7898 20 7 3.7525 9.6338 2.9626 21 14 5.5931 9.4395 5.0243 22 1 6.9484 9.4108 4.4180 23 1 5.2484 10.8342 5.4000 24 1 5.5746 8.5814 6.2361 25 6 1.8732 6.0577 3.4826 26 6 1.5289 7.5013 3.1076 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9564 0.7805 -0.8892 31 1 3.9556 0.7809 0.8908 32 1 5.8518 0.8210 0.0008 33 1 8.2707 1.2750 0.0022 34 1 9.0892 3.5964 0.0063 35 1 7.4916 5.4684 0.0019 36 1 5.2930 6.2506 -0.3501 37 1 3.9590 5.1134 -0.6594 38 1 3.8819 4.7217 1.7379 39 1 3.7935 7.5673 0.9724 40 1 2.4467 6.4126 0.8282 41 1 3.9638 10.5801 2.9933 42 1 1.4565 5.2632 2.8633 43 1 1.9746 5.8235 4.5422 44 1 1.4040 8.2163 3.9208 45 1 0.8856 7.6573 2.2416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922085355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:29 Heat of formation + Delta-G solvation = -81.612998 kcal Electronic energy + Delta-G solvation = -26784.373187 eV Core-core repulsion = 22960.769889 eV Total energy + Delta-G solvation = -3823.603298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83073 -41.01845 -38.88863 -38.46076 -37.49857 -36.03926 -33.90606 -32.31538 -31.40168 -30.22844 -28.07837 -27.82458 -27.03355 -24.67153 -23.68001 -22.93082 -22.27948 -21.93051 -20.90385 -19.35468 -18.44689 -18.14457 -18.01840 -17.90711 -17.01024 -16.58501 -16.54247 -16.45446 -15.97566 -15.53420 -15.34540 -15.09536 -14.90510 -14.68692 -14.40055 -14.09947 -13.78249 -13.45731 -13.40654 -13.11420 -13.00886 -12.94981 -12.83930 -12.61122 -12.38883 -12.24383 -12.10990 -12.05513 -11.90480 -11.84974 -11.55137 -11.31984 -10.74830 -10.38535 -9.99703 -9.77030 -9.20517 -9.00522 -8.02186 -6.09195 0.42048 0.51898 0.98607 1.09137 1.44114 1.44412 1.54764 2.48996 2.53267 2.81640 3.26903 3.38938 3.56104 3.70660 3.85941 3.93436 3.99703 4.02125 4.18885 4.27143 4.29084 4.32493 4.41096 4.44188 4.52742 4.60800 4.66331 4.67795 4.71247 4.82302 4.87638 4.93595 5.03652 5.10461 5.19415 5.22655 5.38063 5.55533 5.59045 5.68047 5.71842 5.86716 5.88063 6.28727 6.38281 6.48960 6.58898 6.67856 6.93051 7.55625 9.07279 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.004018 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.460699 B = 6966.430131 C = 9020.197035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.461 3.539 4 O -0.529 6.529 5 C 0.065 3.935 6 O -0.324 6.324 7 C 0.119 3.881 8 C -0.204 4.204 9 C -0.079 4.079 10 C -0.156 4.156 11 C -0.078 4.078 12 C -0.123 4.123 13 C 0.111 3.889 14 N -0.663 5.663 15 C 0.124 3.876 16 C 0.029 3.971 17 C -0.479 4.479 18 H 0.047 0.953 19 C 0.021 3.979 20 N -0.913 5.913 21 Si 0.949 3.051 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.190 4.190 26 C -0.162 4.162 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.332 0.668 39 H 0.045 0.955 40 H -0.007 1.007 41 H 0.256 0.744 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 -23.781 -9.424 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.304 3.696 4 O -0.418 6.418 5 C -0.010 4.010 6 O -0.238 6.238 7 C 0.074 3.926 8 C -0.222 4.222 9 C -0.097 4.097 10 C -0.174 4.174 11 C -0.097 4.097 12 C -0.124 4.124 13 C -0.018 4.018 14 N -0.293 5.293 15 C -0.005 4.005 16 C 0.028 3.972 17 C -0.517 4.517 18 H 0.065 0.935 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.775 3.225 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.195 1.195 25 C -0.228 4.228 26 C -0.200 4.200 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.181 0.819 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.143 0.857 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.149 0.851 39 H 0.064 0.936 40 H 0.011 0.989 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.412 -22.760 -9.291 24.819 hybrid contribution -0.817 0.689 0.144 1.078 sum 2.596 -22.071 -9.147 24.032 Atomic orbital electron populations 1.23613 0.74137 1.06132 1.02472 1.86430 1.25232 1.31134 1.83861 1.23555 0.91991 0.81748 0.72260 1.90767 1.67804 1.37839 1.45341 1.22196 0.87404 0.83152 1.08258 1.86056 1.21615 1.26713 1.89412 1.18902 0.81455 0.93966 0.98287 1.21540 0.93955 0.98641 1.08086 1.21342 0.94991 0.97384 0.95955 1.21380 1.00520 0.92556 1.02895 1.21059 0.91157 1.00506 0.96991 1.19215 0.94888 0.91565 1.06700 1.20612 0.95404 0.95825 0.89974 1.60358 1.40883 1.08200 1.19849 1.21191 0.90991 0.92579 0.95772 1.18935 0.88373 0.97597 0.92291 1.20471 1.16256 0.91839 1.23126 0.93463 1.25613 0.97826 0.97162 0.97135 1.70130 1.44349 1.03163 1.37554 0.85704 0.79572 0.77301 0.79886 1.20400 1.21088 1.19544 1.22917 1.07114 0.92509 1.00225 1.22421 1.01336 0.95138 1.01114 0.92380 0.92062 0.84017 0.84174 0.84688 0.81927 0.82202 0.83619 0.85681 0.91552 0.96101 0.85078 0.93634 0.98884 0.93462 0.90624 0.90281 0.91862 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -6.17 10.57 -51.35 -0.54 -6.71 16 3 C 0.46 10.71 8.03 71.23 0.57 11.28 16 4 O -0.53 -17.79 16.25 28.40 0.46 -17.33 16 5 C 0.07 1.14 5.33 71.23 0.38 1.52 16 6 O -0.32 -9.08 8.85 -73.32 -0.65 -9.73 16 7 C 0.12 3.17 6.66 22.51 0.15 3.32 16 8 C -0.20 -3.74 9.04 22.37 0.20 -3.53 16 9 C -0.08 -1.33 10.04 22.25 0.22 -1.10 16 10 C -0.16 -3.22 10.04 22.28 0.22 -3.00 16 11 C -0.08 -2.17 9.67 22.26 0.22 -1.96 16 12 C -0.12 -3.88 5.41 -19.77 -0.11 -3.99 16 13 C 0.11 4.24 5.47 85.56 0.47 4.70 16 14 N -0.66 -29.59 6.37 -517.95 -3.30 -32.88 16 15 C 0.12 6.23 5.51 86.30 0.48 6.71 16 16 C 0.03 1.53 1.55 -52.93 -0.08 1.44 16 17 C -0.48 -27.64 8.74 25.60 0.22 -27.41 16 18 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 19 C 0.02 1.23 5.39 84.66 0.46 1.69 16 20 N -0.91 -54.51 12.92 21.45 0.28 -54.23 16 21 Si 0.95 45.56 29.54 68.60 2.03 47.58 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 C -0.19 -9.01 9.96 30.62 0.30 -8.71 16 26 C -0.16 -8.29 9.41 30.62 0.29 -8.00 16 27 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 28 H 0.06 0.90 8.13 -2.38 -0.02 0.88 16 29 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.14 1.40 7.66 -2.38 -0.02 1.38 16 31 H 0.14 1.57 7.66 -2.39 -0.02 1.55 16 32 H 0.16 1.66 6.30 -2.91 -0.02 1.64 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.13 3.48 8.04 -2.91 -0.02 3.46 16 36 H 0.07 2.57 8.00 -2.39 -0.02 2.55 16 37 H 0.02 0.83 7.85 -2.39 -0.02 0.81 16 38 H 0.33 14.68 8.73 -89.69 -0.78 13.90 16 39 H 0.05 2.52 8.13 -2.38 -0.02 2.50 16 40 H -0.01 -0.34 8.09 -2.39 -0.02 -0.36 16 41 H 0.26 14.65 8.31 -92.70 -0.77 13.87 16 42 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 43 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 44 H 0.06 3.42 8.14 -2.39 -0.02 3.40 16 45 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -75.48 386.30 3.67 -71.81 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.21 Total: 26.92 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 5.19 Total: -25.43 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -3.02 Total: -87.12 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.73 Total: -33.77 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.48 3.67 -71.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922085355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.801 kcal (2) G-P(sol) polarization free energy of solvation -75.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds