Wall clock time and date at job start Tue Mar 31 2020 12:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34234 * 117.00446 * 2 1 4 4 O 1.20826 * 119.99805 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00369 * 179.97438 * 3 2 1 6 6 C 1.50704 * 110.27658 * 302.09293 * 5 3 2 7 7 C 1.38230 * 120.00212 * 171.56124 * 6 5 3 8 8 C 1.38234 * 119.99926 * 179.79046 * 7 6 5 9 9 C 1.38233 * 120.00267 * 0.45630 * 8 7 6 10 10 C 1.38238 * 119.99738 * 359.77425 * 9 8 7 11 11 C 1.38236 * 119.99545 * 351.82894 * 6 5 3 12 12 C 1.54595 * 110.38998 * 64.23736 * 5 3 2 13 13 C 1.54937 * 102.92372 * 97.00180 * 12 5 3 14 14 N 1.48537 * 103.22571 * 37.41192 * 13 12 5 15 15 C 1.46896 * 110.99620 * 200.28031 * 14 13 12 16 16 C 1.53003 * 109.47251 * 287.39475 * 15 14 13 17 17 H 1.08994 * 109.46993 * 60.00362 * 16 15 14 18 18 O 1.42899 * 109.47114 * 300.00448 * 16 15 14 19 19 C 1.50698 * 109.47062 * 180.02562 * 16 15 14 20 20 H 1.08004 * 120.00147 * 359.72798 * 19 16 15 21 21 C 1.37875 * 119.99954 * 180.02562 * 19 16 15 22 22 N 1.31513 * 119.99939 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 120.00051 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47252 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47421 * 119.99793 * 23 21 19 26 26 H 1.48500 * 109.46969 * 239.99559 * 23 21 19 27 27 C 1.47900 * 105.81676 * 320.79671 * 14 13 12 28 28 H 1.08993 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47218 * 300.00303 * 1 2 3 30 30 H 1.09008 * 109.47007 * 59.99920 * 1 2 3 31 31 H 1.08003 * 119.99789 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.99589 * 180.25412 * 8 7 6 33 33 H 1.08000 * 120.00365 * 179.79456 * 9 8 7 34 34 H 1.07995 * 120.00128 * 179.97438 * 10 9 8 35 35 H 1.07995 * 120.00355 * 359.97438 * 11 6 5 36 36 H 1.09005 * 110.72512 * 215.36245 * 12 5 3 37 37 H 1.09001 * 110.72612 * 338.64153 * 12 5 3 38 38 H 1.08999 * 110.66558 * 278.97853 * 13 12 5 39 39 H 1.08997 * 110.66887 * 155.84701 * 13 12 5 40 40 H 1.09003 * 109.46676 * 167.40017 * 15 14 13 41 41 H 1.08993 * 109.47225 * 47.40198 * 15 14 13 42 42 H 0.96698 * 114.00164 * 300.00150 * 18 16 15 43 43 H 0.97003 * 120.00339 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.91481 * 144.68993 * 27 14 13 45 45 H 1.09004 * 109.91250 * 265.96948 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1267 0.5524 1.1986 7 6 5.4895 0.3481 1.3075 8 6 6.0038 -0.3107 2.4085 9 6 5.1546 -0.7737 3.3960 10 6 3.7913 -0.5737 3.2848 11 6 3.2773 0.0891 2.1859 12 6 4.1377 0.6738 -1.3041 13 6 4.3662 1.9238 -2.1905 14 7 4.8339 2.9472 -1.2208 15 6 4.6497 4.3026 -1.7561 16 6 5.6780 4.5593 -2.8597 17 1 5.5420 3.8313 -3.6594 18 8 6.9957 4.4348 -2.3211 19 6 5.4893 5.9501 -3.4084 20 1 4.7108 6.5857 -3.0129 21 6 6.3067 6.4090 -4.4195 22 7 7.2512 5.6331 -4.9047 23 14 6.0734 8.1332 -5.0992 24 1 4.9518 8.7980 -4.3883 25 1 7.3193 8.9164 -4.9007 26 1 5.7632 8.0558 -6.5494 27 6 4.0245 2.7449 0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 6.1527 0.7060 0.5337 32 1 7.0690 -0.4667 2.4955 33 1 5.5561 -1.2914 4.2546 34 1 3.1277 -0.9357 4.0561 35 1 2.2122 0.2452 2.0989 36 1 5.0795 0.1597 -1.1119 37 1 3.4166 -0.0003 -1.7665 38 1 3.4344 2.2373 -2.6611 39 1 5.1311 1.7280 -2.9420 40 1 4.7857 5.0307 -0.9564 41 1 3.6446 4.3976 -2.1668 42 1 7.1873 5.0535 -1.6031 43 1 7.8266 5.9560 -5.6158 44 1 4.6299 2.9454 0.8845 45 1 3.1568 3.4044 -0.0158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930542272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:10 Heat of formation + Delta-G solvation = -95.688525 kcal Electronic energy + Delta-G solvation = -27596.245786 eV Core-core repulsion = 23772.032127 eV Total energy + Delta-G solvation = -3824.213659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37387 -39.33249 -38.19373 -36.56672 -35.52961 -33.12440 -32.03531 -31.06362 -30.24664 -28.55986 -28.33955 -27.27223 -24.72551 -23.47952 -22.43060 -21.96442 -21.62292 -19.99759 -19.69507 -17.97651 -17.20947 -17.03732 -16.64873 -16.07320 -15.49252 -15.08656 -14.76023 -14.53147 -14.44493 -14.18253 -13.91539 -13.62156 -13.48224 -13.37607 -13.20510 -12.88080 -12.67795 -12.33487 -12.19237 -11.96942 -11.61416 -11.51487 -11.25295 -11.15731 -11.02473 -10.96342 -10.92438 -10.81132 -10.70619 -10.46721 -10.29945 -10.02338 -9.00324 -8.99515 -8.77492 -8.54356 -8.07794 -7.76865 -5.97715 -4.15670 1.21609 1.31974 2.02347 2.47951 3.28540 3.36797 3.40503 3.64835 4.27580 4.39050 4.41756 4.62009 4.64879 4.80289 4.88247 4.90124 4.90384 4.96217 5.07105 5.27156 5.30166 5.33636 5.43030 5.45229 5.57038 5.75348 5.82554 5.89967 5.95048 6.00251 6.03759 6.15635 6.19490 6.29427 6.35106 6.36479 6.43443 6.49282 6.58722 6.84370 6.88657 7.30153 7.52021 7.58291 7.79650 7.90030 8.23637 8.88468 9.49895 9.66252 11.06406 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.003388 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.004334 B = 8261.558712 C = 9270.226164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.477 3.523 4 O -0.498 6.498 5 C -0.020 4.020 6 C -0.065 4.065 7 C -0.096 4.096 8 C -0.117 4.117 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.107 4.107 13 C 0.034 3.966 14 N -0.496 5.496 15 C 0.021 3.979 16 C 0.241 3.759 17 H 0.053 0.947 18 O -0.553 6.553 19 C -0.574 4.574 20 H 0.055 0.945 21 C 0.080 3.920 22 N -0.858 5.858 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.283 1.283 27 C 0.045 3.955 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.031 0.969 42 H 0.342 0.658 43 H 0.259 0.741 44 H 0.087 0.913 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 -15.633 14.348 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.268 6.268 3 C 0.319 3.681 4 O -0.384 6.384 5 C -0.022 4.022 6 C -0.065 4.065 7 C -0.114 4.114 8 C -0.135 4.135 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.131 4.131 12 C -0.145 4.145 13 C -0.094 4.094 14 N -0.220 5.220 15 C -0.106 4.106 16 C 0.183 3.817 17 H 0.071 0.929 18 O -0.355 6.355 19 C -0.612 4.612 20 H 0.073 0.927 21 C -0.126 4.126 22 N -0.494 5.494 23 Si 0.715 3.285 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.083 4.083 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.185 0.815 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.456 -15.874 13.857 22.705 hybrid contribution -1.511 1.665 -0.184 2.256 sum -9.967 -14.209 13.674 22.096 Atomic orbital electron populations 1.23294 0.76571 1.03699 1.02642 1.86575 1.23127 1.33121 1.84015 1.23420 0.91629 0.81364 0.71712 1.90668 1.66708 1.36271 1.44738 1.20365 0.86373 0.98787 0.96698 1.19310 0.94121 0.98713 0.94353 1.21117 0.94260 0.97608 0.98426 1.21169 0.99933 0.98359 0.94054 1.21164 0.93571 1.00182 0.99048 1.21038 0.95484 0.99526 0.97757 1.21060 0.99107 0.98732 0.94192 1.22767 1.01925 0.98081 0.91725 1.23305 0.99622 0.90772 0.95677 1.64971 1.49717 1.04545 1.02778 1.23306 1.00054 0.87477 0.99796 1.19249 0.78662 0.95463 0.88368 0.92917 1.86551 1.33993 1.60940 1.54019 1.21707 1.18139 1.00607 1.20760 0.92718 1.25012 0.94668 0.97167 0.95755 1.70092 1.18085 1.35622 1.25613 0.86637 0.78110 0.84899 0.78846 1.19758 1.20847 1.20945 1.23095 0.97667 0.90834 0.96713 0.88006 0.91948 0.91790 0.84491 0.85709 0.86174 0.86202 0.86720 0.88618 0.90335 0.94045 0.88661 0.91723 0.95076 0.81471 0.93095 0.89482 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -4.19 8.94 -39.27 -0.35 -4.54 16 3 C 0.48 6.77 5.18 36.00 0.19 6.95 16 4 O -0.50 -8.33 14.99 -18.75 -0.28 -8.61 16 5 C -0.02 -0.28 0.75 -155.46 -0.12 -0.40 16 6 C -0.06 -0.81 4.62 -104.62 -0.48 -1.29 16 7 C -0.10 -1.14 8.47 -39.59 -0.34 -1.47 16 8 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 9 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 10 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 11 C -0.11 -1.31 8.82 -39.58 -0.35 -1.66 16 12 C -0.11 -1.43 6.00 -24.87 -0.15 -1.58 16 13 C 0.03 0.57 5.91 -1.90 -0.01 0.56 16 14 N -0.50 -9.03 5.11 -230.46 -1.18 -10.21 16 15 C 0.02 0.45 4.31 -3.82 -0.02 0.44 16 16 C 0.24 6.11 2.86 -27.88 -0.08 6.04 16 17 H 0.05 1.47 7.37 -51.93 -0.38 1.08 16 18 O -0.55 -14.36 12.59 -35.23 -0.44 -14.80 16 19 C -0.57 -15.89 8.76 -34.44 -0.30 -16.19 16 20 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 21 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 22 N -0.86 -25.46 12.84 55.43 0.71 -24.74 16 23 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.04 0.72 5.78 -2.76 -0.02 0.71 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.14 1.68 7.25 -52.48 -0.38 1.30 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.11 1.31 5.89 -52.49 -0.31 1.00 16 36 H 0.10 1.19 6.41 -51.93 -0.33 0.86 16 37 H 0.08 0.95 7.74 -51.93 -0.40 0.55 16 38 H 0.04 0.72 7.81 -51.93 -0.41 0.31 16 39 H 0.10 1.67 7.80 -51.93 -0.41 1.27 16 40 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 41 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 42 H 0.34 8.03 9.04 45.56 0.41 8.44 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.09 1.35 7.54 -51.93 -0.39 0.96 16 45 H 0.07 1.19 6.05 -51.93 -0.31 0.88 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -32.43 366.35 -8.75 -41.18 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.82 Total: 9.01 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.90 Total: -9.12 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.47 Total: -34.95 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.08 Total: -27.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.43 -8.75 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930542272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.510 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds