Wall clock time and date at job start Tue Mar 31 2020 12:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34234 * 117.00446 * 2 1 4 4 O 1.20826 * 119.99805 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00369 * 179.97438 * 3 2 1 6 6 C 1.50704 * 110.27658 * 302.09293 * 5 3 2 7 7 C 1.38230 * 120.00212 * 171.56124 * 6 5 3 8 8 C 1.38234 * 119.99926 * 179.79046 * 7 6 5 9 9 C 1.38233 * 120.00267 * 0.45630 * 8 7 6 10 10 C 1.38238 * 119.99738 * 359.77425 * 9 8 7 11 11 C 1.38236 * 119.99545 * 351.82894 * 6 5 3 12 12 C 1.54595 * 110.38998 * 64.23736 * 5 3 2 13 13 C 1.54937 * 102.92372 * 97.00180 * 12 5 3 14 14 N 1.48537 * 103.22571 * 37.41192 * 13 12 5 15 15 C 1.46896 * 110.99620 * 200.28031 * 14 13 12 16 16 C 1.53003 * 109.47251 * 287.39475 * 15 14 13 17 17 H 1.08994 * 109.46993 * 60.00362 * 16 15 14 18 18 O 1.42899 * 109.47114 * 300.00448 * 16 15 14 19 19 C 1.50698 * 109.47062 * 180.02562 * 16 15 14 20 20 H 1.08004 * 120.00147 * 359.72798 * 19 16 15 21 21 C 1.37875 * 119.99954 * 180.02562 * 19 16 15 22 22 N 1.31513 * 119.99939 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 120.00051 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47252 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47421 * 119.99793 * 23 21 19 26 26 H 1.48500 * 109.46969 * 239.99559 * 23 21 19 27 27 C 1.47900 * 105.81676 * 320.79671 * 14 13 12 28 28 H 1.08993 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47218 * 300.00303 * 1 2 3 30 30 H 1.09008 * 109.47007 * 59.99920 * 1 2 3 31 31 H 1.08003 * 119.99789 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.99589 * 180.25412 * 8 7 6 33 33 H 1.08000 * 120.00365 * 179.79456 * 9 8 7 34 34 H 1.07995 * 120.00128 * 179.97438 * 10 9 8 35 35 H 1.07995 * 120.00355 * 359.97438 * 11 6 5 36 36 H 1.09005 * 110.72512 * 215.36245 * 12 5 3 37 37 H 1.09001 * 110.72612 * 338.64153 * 12 5 3 38 38 H 1.08999 * 110.66558 * 278.97853 * 13 12 5 39 39 H 1.08997 * 110.66887 * 155.84701 * 13 12 5 40 40 H 1.09003 * 109.46676 * 167.40017 * 15 14 13 41 41 H 1.08993 * 109.47225 * 47.40198 * 15 14 13 42 42 H 0.96698 * 114.00164 * 300.00150 * 18 16 15 43 43 H 0.97003 * 120.00339 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.91481 * 144.68993 * 27 14 13 45 45 H 1.09004 * 109.91250 * 265.96948 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1267 0.5524 1.1986 7 6 5.4895 0.3481 1.3075 8 6 6.0038 -0.3107 2.4085 9 6 5.1546 -0.7737 3.3960 10 6 3.7913 -0.5737 3.2848 11 6 3.2773 0.0891 2.1859 12 6 4.1377 0.6738 -1.3041 13 6 4.3662 1.9238 -2.1905 14 7 4.8339 2.9472 -1.2208 15 6 4.6497 4.3026 -1.7561 16 6 5.6780 4.5593 -2.8597 17 1 5.5420 3.8313 -3.6594 18 8 6.9957 4.4348 -2.3211 19 6 5.4893 5.9501 -3.4084 20 1 4.7108 6.5857 -3.0129 21 6 6.3067 6.4090 -4.4195 22 7 7.2512 5.6331 -4.9047 23 14 6.0734 8.1332 -5.0992 24 1 4.9518 8.7980 -4.3883 25 1 7.3193 8.9164 -4.9007 26 1 5.7632 8.0558 -6.5494 27 6 4.0245 2.7449 0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 6.1527 0.7060 0.5337 32 1 7.0690 -0.4667 2.4955 33 1 5.5561 -1.2914 4.2546 34 1 3.1277 -0.9357 4.0561 35 1 2.2122 0.2452 2.0989 36 1 5.0795 0.1597 -1.1119 37 1 3.4166 -0.0003 -1.7665 38 1 3.4344 2.2373 -2.6611 39 1 5.1311 1.7280 -2.9420 40 1 4.7857 5.0307 -0.9564 41 1 3.6446 4.3976 -2.1668 42 1 7.1873 5.0535 -1.6031 43 1 7.8266 5.9560 -5.6158 44 1 4.6299 2.9454 0.8845 45 1 3.1568 3.4044 -0.0158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930542272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:09 Heat of formation + Delta-G solvation = -117.570672 kcal Electronic energy + Delta-G solvation = -27597.194667 eV Core-core repulsion = 23772.032127 eV Total energy + Delta-G solvation = -3825.162540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.46383 -40.32777 -39.38673 -37.76507 -37.28500 -34.47027 -34.16706 -31.91750 -31.44228 -30.01413 -29.46491 -28.50844 -26.48343 -24.56029 -23.43257 -23.29386 -22.80184 -21.67631 -20.76333 -19.06478 -18.94328 -18.24124 -17.79984 -16.99518 -16.73750 -16.55466 -16.47561 -16.02455 -15.75822 -15.47391 -15.35201 -14.80958 -14.72237 -14.37715 -14.28012 -14.15460 -14.06591 -13.58978 -13.43201 -13.12779 -13.04138 -12.83827 -12.78608 -12.65460 -12.57856 -12.40959 -12.11823 -12.06801 -11.99303 -11.86072 -11.79062 -11.44378 -11.02330 -10.70691 -10.10728 -9.80382 -9.63369 -9.34908 -8.13570 -6.39448 0.38834 0.51526 0.92252 1.38880 1.40191 1.50711 1.52554 2.38052 2.80308 3.02062 3.12704 3.31123 3.42611 3.50361 3.74377 4.05194 4.11339 4.18696 4.24003 4.25075 4.26501 4.28560 4.34296 4.35136 4.47203 4.61286 4.64316 4.67509 4.71291 4.71968 4.80375 4.87592 4.97610 5.00076 5.06885 5.17594 5.19080 5.57388 5.58056 5.63816 5.65535 5.71244 5.90384 5.96416 6.10338 6.14562 6.51995 6.73076 7.34734 7.62956 8.90975 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.003388 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.004334 B = 8261.558712 C = 9270.226164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.349 6.349 3 C 0.481 3.519 4 O -0.530 6.530 5 C -0.015 4.015 6 C -0.079 4.079 7 C -0.109 4.109 8 C -0.120 4.120 9 C -0.117 4.117 10 C -0.119 4.119 11 C -0.123 4.123 12 C -0.095 4.095 13 C 0.031 3.969 14 N -0.502 5.502 15 C 0.040 3.960 16 C 0.245 3.755 17 H 0.021 0.979 18 O -0.566 6.566 19 C -0.591 4.591 20 H 0.054 0.946 21 C 0.029 3.971 22 N -0.896 5.896 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.278 1.278 27 C 0.050 3.950 28 H 0.138 0.862 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.031 0.969 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.021 0.979 42 H 0.352 0.648 43 H 0.262 0.738 44 H 0.092 0.908 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 -16.770 16.089 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C 0.325 3.675 4 O -0.419 6.419 5 C -0.017 4.017 6 C -0.079 4.079 7 C -0.126 4.126 8 C -0.138 4.138 9 C -0.135 4.135 10 C -0.137 4.137 11 C -0.141 4.141 12 C -0.132 4.132 13 C -0.097 4.097 14 N -0.225 5.225 15 C -0.089 4.089 16 C 0.187 3.813 17 H 0.039 0.961 18 O -0.369 6.369 19 C -0.629 4.629 20 H 0.073 0.927 21 C -0.174 4.174 22 N -0.533 5.533 23 Si 0.784 3.216 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.204 1.204 27 C -0.078 4.078 28 H 0.156 0.844 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.197 0.803 43 H 0.071 0.929 44 H 0.110 0.890 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.954 -17.034 15.613 24.781 hybrid contribution -1.381 1.923 -0.662 2.458 sum -10.336 -15.111 14.951 23.637 Atomic orbital electron populations 1.23635 0.74616 1.06062 1.02595 1.86561 1.24980 1.31586 1.83310 1.23423 0.91670 0.81559 0.70883 1.90655 1.67365 1.37418 1.46464 1.20218 0.86563 0.97217 0.97698 1.19214 0.94594 0.99851 0.94257 1.21114 0.93852 0.98552 0.99132 1.21442 1.01186 0.97610 0.93521 1.21534 0.93282 0.99231 0.99436 1.21364 0.96277 0.98528 0.97533 1.21143 0.98967 0.99335 0.94694 1.22713 1.03022 0.96626 0.90881 1.23294 0.98501 0.92049 0.95808 1.64870 1.50648 1.03209 1.03793 1.22897 0.97918 0.89537 0.98498 1.19045 0.79530 0.93804 0.88953 0.96070 1.86492 1.34456 1.61377 1.54572 1.22064 1.18111 1.01609 1.21118 0.92729 1.25853 0.94250 1.01335 0.95976 1.70217 1.19081 1.37699 1.26308 0.85523 0.78265 0.79736 0.78113 1.19081 1.20182 1.20408 1.23011 0.96714 0.92571 0.95509 0.84419 0.91613 0.92319 0.85547 0.83865 0.83266 0.83701 0.86937 0.87478 0.88662 0.95093 0.90106 0.91422 0.96099 0.80343 0.92916 0.88997 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.56 113.37 1.20 1.57 16 2 O -0.35 -7.84 8.94 -51.45 -0.46 -8.30 16 3 C 0.48 13.53 5.18 71.24 0.37 13.90 16 4 O -0.53 -17.99 14.99 21.96 0.33 -17.66 16 5 C -0.02 -0.42 0.75 -52.80 -0.04 -0.46 16 6 C -0.08 -1.89 4.62 -19.87 -0.09 -1.99 16 7 C -0.11 -2.44 8.47 22.27 0.19 -2.25 16 8 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 9 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 10 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 11 C -0.12 -2.64 8.82 22.27 0.20 -2.44 16 12 C -0.09 -2.52 6.00 31.80 0.19 -2.33 16 13 C 0.03 1.09 5.91 86.65 0.51 1.60 16 14 N -0.50 -18.84 5.11 -883.04 -4.51 -23.35 16 15 C 0.04 1.75 4.31 86.30 0.37 2.12 16 16 C 0.24 12.88 2.86 29.85 0.09 12.97 16 17 H 0.02 1.25 7.37 -2.39 -0.02 1.23 16 18 O -0.57 -30.15 12.59 -148.98 -1.88 -32.03 16 19 C -0.59 -33.35 8.76 25.60 0.22 -33.13 16 20 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 21 C 0.03 1.62 5.40 84.65 0.46 2.08 16 22 N -0.90 -54.08 12.84 21.45 0.28 -53.81 16 23 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 C 0.05 1.63 5.78 86.44 0.50 2.13 16 28 H 0.14 1.16 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.13 3.06 7.25 -2.91 -0.02 3.03 16 32 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.11 2.40 5.89 -2.91 -0.02 2.39 16 36 H 0.11 2.62 6.41 -2.38 -0.02 2.60 16 37 H 0.09 2.22 7.74 -2.39 -0.02 2.20 16 38 H 0.03 1.12 7.81 -2.39 -0.02 1.10 16 39 H 0.08 3.00 7.80 -2.39 -0.02 2.98 16 40 H 0.07 2.88 8.08 -2.39 -0.02 2.86 16 41 H 0.02 0.94 7.83 -2.39 -0.02 0.93 16 42 H 0.35 16.86 9.04 -74.06 -0.67 16.19 16 43 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.09 2.89 7.54 -2.39 -0.02 2.87 16 45 H 0.05 1.86 6.05 -2.38 -0.01 1.85 16 Total: -1.00 -70.67 366.35 0.94 -69.73 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.33 Total: 30.79 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.83 Total: -11.50 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -4.24 Total: -77.16 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -2.01 Total: -57.99 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.67 0.94 -69.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930542272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.845 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds