Wall clock time and date at job start Tue Mar 31 2020 12:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 116.99852 * 2 1 4 4 O 1.20825 * 119.99623 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00195 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47410 * 180.02562 * 5 3 2 7 7 H 1.09006 * 110.87152 * 308.83953 * 6 5 3 8 8 C 1.55137 * 111.02589 * 72.70779 * 6 5 3 9 9 C 1.54323 * 103.01652 * 153.76052 * 8 6 5 10 10 N 1.47439 * 107.23578 * 337.71958 * 9 8 6 11 11 C 1.46899 * 111.00009 * 236.74278 * 10 9 8 12 12 C 1.50702 * 109.47200 * 69.87106 * 11 10 9 13 13 C 1.38299 * 119.93464 * 269.72727 * 12 11 10 14 14 C 1.38099 * 120.06966 * 179.72707 * 13 12 11 15 15 C 1.38882 * 119.93026 * 0.56685 * 14 13 12 16 16 O 1.35749 * 120.06875 * 179.68417 * 15 14 13 17 17 C 1.34833 * 116.99912 * 174.48531 * 16 15 14 18 18 H 1.07994 * 120.00113 * 5.06282 * 17 16 15 19 19 C 1.38657 * 119.99633 * 185.05496 * 17 16 15 20 20 N 1.31555 * 120.00170 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99561 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46977 * 90.00053 * 21 19 17 23 23 H 1.48501 * 109.46915 * 210.00035 * 21 19 17 24 24 H 1.48501 * 109.47155 * 330.00460 * 21 19 17 25 25 C 1.38880 * 119.85923 * 359.70601 * 15 14 13 26 26 C 1.38097 * 119.93635 * 0.02562 * 25 15 14 27 27 C 1.47850 * 108.56729 * 359.00999 * 10 9 8 28 28 H 1.08997 * 109.47330 * 299.99940 * 1 2 3 29 29 H 1.09000 * 109.47533 * 60.00120 * 1 2 3 30 30 H 1.09003 * 109.47376 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47277 * 59.99404 * 5 3 2 32 32 H 1.09001 * 109.46995 * 300.00245 * 5 3 2 33 33 H 1.09005 * 110.70156 * 35.38175 * 8 6 5 34 34 H 1.08997 * 110.70855 * 272.14990 * 8 6 5 35 35 H 1.09004 * 109.88195 * 218.31129 * 9 8 6 36 36 H 1.08997 * 109.88557 * 97.12530 * 9 8 6 37 37 H 1.08996 * 109.47157 * 189.87023 * 11 10 9 38 38 H 1.08993 * 109.47096 * 309.87389 * 11 10 9 39 39 H 1.08002 * 119.96082 * 359.97438 * 13 12 11 40 40 H 1.08002 * 120.03295 * 180.28041 * 14 13 12 41 41 H 0.97006 * 119.99678 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.02688 * 179.97438 * 25 15 14 43 43 H 1.07989 * 119.96808 * 179.97438 * 26 25 15 44 44 H 1.08998 * 110.37695 * 142.92871 * 27 10 9 45 45 H 1.09007 * 110.37486 * 265.26608 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 1 3.4972 3.2963 -0.7926 8 6 3.7456 3.3971 1.3833 9 6 4.7920 4.5305 1.4290 10 7 5.8638 4.1740 0.4813 11 6 7.1690 4.1323 1.1540 12 6 7.2171 2.9475 2.0841 13 6 6.8091 3.0849 3.3984 14 6 6.8467 1.9997 4.2517 15 6 7.3060 0.7723 3.7919 16 8 7.3502 -0.2947 4.6299 17 6 7.6970 -1.4815 4.0921 18 1 8.0033 -1.5368 3.0580 19 6 7.6605 -2.6308 4.8669 20 7 7.2870 -2.5634 6.1265 21 14 8.1417 -4.2749 4.1220 22 1 9.5986 -4.4949 4.3072 23 1 7.3874 -5.3629 4.7947 24 1 7.8218 -4.2740 2.6718 25 6 7.7203 0.6390 2.4730 26 6 7.6751 1.7266 1.6232 27 6 5.5389 2.8660 -0.1265 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7807 0.8891 33 1 3.9182 2.6807 2.1865 34 1 2.7354 3.8028 1.4378 35 1 5.2009 4.6172 2.4357 36 1 4.3316 5.4724 1.1309 37 1 7.9591 4.0414 0.4087 38 1 7.3125 5.0491 1.7258 39 1 6.4569 4.0410 3.7567 40 1 6.5237 2.1065 5.2767 41 1 7.2612 -3.3676 6.6684 42 1 8.0784 -0.3141 2.1127 43 1 7.9976 1.6236 0.5977 44 1 5.8359 2.8504 -1.1751 45 1 6.0306 2.0610 0.4199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137122889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:38 Heat of formation + Delta-G solvation = -81.660005 kcal Electronic energy + Delta-G solvation = -27198.445464 eV Core-core repulsion = 23374.840128 eV Total energy + Delta-G solvation = -3823.605337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66780 -39.77909 -38.52149 -36.77141 -36.20952 -33.52733 -32.31215 -30.76881 -30.19590 -28.70113 -28.31931 -26.64431 -25.56487 -24.20504 -22.18503 -21.45948 -21.12287 -20.09481 -19.96509 -18.06122 -17.67576 -16.99314 -16.92223 -16.53691 -15.72625 -15.44392 -14.74265 -14.68647 -14.47894 -14.00135 -13.75575 -13.62654 -13.59444 -13.36441 -13.24908 -12.86217 -12.73036 -12.50676 -12.27662 -11.99064 -11.78772 -11.44998 -11.29692 -11.15465 -11.03647 -10.97409 -10.93542 -10.88318 -10.75759 -10.65948 -10.50234 -10.43583 -10.34159 -9.39887 -8.88347 -8.29948 -8.08892 -7.24496 -6.50758 -4.09902 2.11686 2.14405 2.21155 2.62953 3.08740 3.09805 3.14562 3.91637 4.15753 4.47657 4.58092 4.65900 4.84754 4.93892 4.97957 5.02400 5.04119 5.18995 5.26529 5.33500 5.35347 5.42456 5.45039 5.50935 5.63873 5.68151 5.71607 5.77583 5.89865 5.99789 6.03920 6.10086 6.14082 6.24130 6.31826 6.33484 6.43040 6.62240 6.81755 6.96134 7.07144 7.15622 7.24842 7.32165 7.37812 7.67231 7.74285 7.93784 8.94804 9.64094 10.67016 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.004261 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.998005 B = 6570.384243 C = 8590.403530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.464 3.536 4 O -0.507 6.507 5 C -0.108 4.108 6 C -0.082 4.082 7 H 0.088 0.912 8 C -0.134 4.134 9 C 0.040 3.960 10 N -0.521 5.521 11 C 0.101 3.899 12 C -0.219 4.219 13 C -0.064 4.064 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.177 6.177 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.235 4.235 26 C -0.061 4.061 27 C 0.031 3.969 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 7.618 -12.406 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.395 6.395 5 C -0.146 4.146 6 C -0.101 4.101 7 H 0.107 0.893 8 C -0.172 4.172 9 C -0.087 4.087 10 N -0.243 5.243 11 C -0.026 4.026 12 C -0.221 4.221 13 C -0.082 4.082 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.164 4.164 20 N -0.496 5.496 21 Si 0.765 3.235 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.254 4.254 26 C -0.080 4.080 27 C -0.097 4.097 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.125 0.875 44 H 0.093 0.907 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.541 8.124 -12.353 16.597 hybrid contribution -0.008 -1.528 0.349 1.568 sum -7.549 6.596 -12.004 15.640 Atomic orbital electron populations 1.23240 0.76551 1.03628 1.02395 1.86544 1.23327 1.33716 1.84116 1.23876 0.92325 0.81180 0.71921 1.90644 1.67286 1.36275 1.45307 1.21433 0.87201 0.99518 1.06414 1.22083 0.96178 0.92770 0.99098 0.89341 1.22825 0.99773 0.98176 0.96463 1.22814 0.91907 0.98102 0.95922 1.63992 1.02246 1.27944 1.30098 1.21107 0.91348 0.95435 0.94737 1.19901 1.10396 0.96333 0.95482 1.20521 0.98088 0.96895 0.92731 1.20215 1.09002 0.91614 1.00472 1.19384 0.92223 0.88815 0.89362 1.83982 1.75356 1.14679 1.33971 1.21320 1.46077 0.81899 0.97600 0.89047 1.25293 0.96648 0.99014 0.95476 1.70038 1.43477 1.29765 1.06289 0.85724 0.78775 0.80041 0.78987 1.19843 1.20211 1.19135 1.21153 1.09875 0.99959 0.94435 1.20594 0.97186 0.92263 0.97920 1.23350 0.93832 0.92400 1.00104 0.91905 0.92062 0.88176 0.87453 0.87011 0.91249 0.90610 0.92012 0.91133 0.90788 0.90934 0.87338 0.86693 0.91961 0.85589 0.87521 0.90708 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.45 10.57 -39.27 -0.41 -4.86 16 3 C 0.46 6.00 7.81 36.00 0.28 6.28 16 4 O -0.51 -7.53 14.75 -18.75 -0.28 -7.81 16 5 C -0.11 -1.24 5.32 -27.89 -0.15 -1.39 16 6 C -0.08 -0.99 2.57 -88.48 -0.23 -1.22 16 7 H 0.09 1.10 7.87 -51.93 -0.41 0.69 16 8 C -0.13 -1.76 5.89 -24.91 -0.15 -1.90 16 9 C 0.04 0.51 6.40 -2.84 -0.02 0.49 16 10 N -0.52 -6.73 5.41 -232.69 -1.26 -7.99 16 11 C 0.10 1.33 5.52 -4.98 -0.03 1.30 16 12 C -0.22 -3.44 4.21 -104.57 -0.44 -3.88 16 13 C -0.06 -1.07 8.62 -39.61 -0.34 -1.41 16 14 C -0.19 -3.93 9.99 -39.39 -0.39 -4.33 16 15 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 16 O -0.18 -4.91 9.76 0.04 0.00 -4.91 16 17 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 18 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 21 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.23 -4.79 9.17 -39.40 -0.36 -5.15 16 26 C -0.06 -1.02 7.40 -39.61 -0.29 -1.32 16 27 C 0.03 0.38 5.92 -2.30 -0.01 0.37 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.11 1.39 7.97 -51.93 -0.41 0.98 16 33 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 34 H 0.08 1.01 7.58 -51.93 -0.39 0.62 16 35 H 0.06 0.80 5.20 -51.93 -0.27 0.53 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 39 H 0.11 1.58 6.90 -52.49 -0.36 1.22 16 40 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.13 2.60 5.64 -52.48 -0.30 2.30 16 43 H 0.11 1.54 7.85 -52.49 -0.41 1.13 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.06 4.04 -51.93 -0.21 0.85 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -30.89 363.47 -8.24 -39.13 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.38 Total: 6.80 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.13 Total: -16.80 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: -0.50 Total: -32.05 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.69 Total: -17.58 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.89 -8.24 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137122889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.530 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds