Wall clock time and date at job start Tue Mar 31 2020 12:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 116.99852 * 2 1 4 4 O 1.20825 * 119.99623 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00195 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47410 * 180.02562 * 5 3 2 7 7 H 1.09006 * 110.87152 * 308.83953 * 6 5 3 8 8 C 1.55137 * 111.02589 * 72.70779 * 6 5 3 9 9 C 1.54323 * 103.01652 * 153.76052 * 8 6 5 10 10 N 1.47439 * 107.23578 * 337.71958 * 9 8 6 11 11 C 1.46899 * 111.00009 * 236.74278 * 10 9 8 12 12 C 1.50702 * 109.47200 * 69.87106 * 11 10 9 13 13 C 1.38299 * 119.93464 * 269.72727 * 12 11 10 14 14 C 1.38099 * 120.06966 * 179.72707 * 13 12 11 15 15 C 1.38882 * 119.93026 * 0.56685 * 14 13 12 16 16 O 1.35749 * 120.06875 * 179.68417 * 15 14 13 17 17 C 1.34833 * 116.99912 * 174.48531 * 16 15 14 18 18 H 1.07994 * 120.00113 * 5.06282 * 17 16 15 19 19 C 1.38657 * 119.99633 * 185.05496 * 17 16 15 20 20 N 1.31555 * 120.00170 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99561 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46977 * 90.00053 * 21 19 17 23 23 H 1.48501 * 109.46915 * 210.00035 * 21 19 17 24 24 H 1.48501 * 109.47155 * 330.00460 * 21 19 17 25 25 C 1.38880 * 119.85923 * 359.70601 * 15 14 13 26 26 C 1.38097 * 119.93635 * 0.02562 * 25 15 14 27 27 C 1.47850 * 108.56729 * 359.00999 * 10 9 8 28 28 H 1.08997 * 109.47330 * 299.99940 * 1 2 3 29 29 H 1.09000 * 109.47533 * 60.00120 * 1 2 3 30 30 H 1.09003 * 109.47376 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47277 * 59.99404 * 5 3 2 32 32 H 1.09001 * 109.46995 * 300.00245 * 5 3 2 33 33 H 1.09005 * 110.70156 * 35.38175 * 8 6 5 34 34 H 1.08997 * 110.70855 * 272.14990 * 8 6 5 35 35 H 1.09004 * 109.88195 * 218.31129 * 9 8 6 36 36 H 1.08997 * 109.88557 * 97.12530 * 9 8 6 37 37 H 1.08996 * 109.47157 * 189.87023 * 11 10 9 38 38 H 1.08993 * 109.47096 * 309.87389 * 11 10 9 39 39 H 1.08002 * 119.96082 * 359.97438 * 13 12 11 40 40 H 1.08002 * 120.03295 * 180.28041 * 14 13 12 41 41 H 0.97006 * 119.99678 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.02688 * 179.97438 * 25 15 14 43 43 H 1.07989 * 119.96808 * 179.97438 * 26 25 15 44 44 H 1.08998 * 110.37695 * 142.92871 * 27 10 9 45 45 H 1.09007 * 110.37486 * 265.26608 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 1 3.4972 3.2963 -0.7926 8 6 3.7456 3.3971 1.3833 9 6 4.7920 4.5305 1.4290 10 7 5.8638 4.1740 0.4813 11 6 7.1690 4.1323 1.1540 12 6 7.2171 2.9475 2.0841 13 6 6.8091 3.0849 3.3984 14 6 6.8467 1.9997 4.2517 15 6 7.3060 0.7723 3.7919 16 8 7.3502 -0.2947 4.6299 17 6 7.6970 -1.4815 4.0921 18 1 8.0033 -1.5368 3.0580 19 6 7.6605 -2.6308 4.8669 20 7 7.2870 -2.5634 6.1265 21 14 8.1417 -4.2749 4.1220 22 1 9.5986 -4.4949 4.3072 23 1 7.3874 -5.3629 4.7947 24 1 7.8218 -4.2740 2.6718 25 6 7.7203 0.6390 2.4730 26 6 7.6751 1.7266 1.6232 27 6 5.5389 2.8660 -0.1265 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7807 0.8891 33 1 3.9182 2.6807 2.1865 34 1 2.7354 3.8028 1.4378 35 1 5.2009 4.6172 2.4357 36 1 4.3316 5.4724 1.1309 37 1 7.9591 4.0414 0.4087 38 1 7.3125 5.0491 1.7258 39 1 6.4569 4.0410 3.7567 40 1 6.5237 2.1065 5.2767 41 1 7.2612 -3.3676 6.6684 42 1 8.0784 -0.3141 2.1127 43 1 7.9976 1.6236 0.5977 44 1 5.8359 2.8504 -1.1751 45 1 6.0306 2.0610 0.4199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137122889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:37 Heat of formation + Delta-G solvation = -100.722496 kcal Electronic energy + Delta-G solvation = -27199.272076 eV Core-core repulsion = 23374.840128 eV Total energy + Delta-G solvation = -3824.431948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69500 -41.11190 -39.97456 -38.07904 -37.44563 -34.74080 -34.14070 -32.12065 -31.55161 -29.96964 -29.25843 -27.71286 -27.32460 -25.45824 -23.68861 -22.53657 -22.45658 -21.30529 -20.98412 -19.84871 -18.81228 -18.63409 -17.90958 -17.49158 -16.88008 -16.54654 -16.42223 -16.20508 -15.81681 -15.45376 -15.17660 -14.92806 -14.82909 -14.45849 -14.37902 -14.21353 -13.91440 -13.88602 -13.54278 -13.21826 -12.93820 -12.89287 -12.67271 -12.44468 -12.38818 -12.21346 -12.14636 -12.12142 -11.93225 -11.84465 -11.80599 -11.49391 -11.43125 -11.14360 -10.78111 -9.75925 -9.23534 -8.87884 -8.46676 -6.14725 0.58380 0.67749 1.13466 1.35737 1.44547 1.52939 1.74871 2.17890 2.80258 3.10853 3.24017 3.52058 3.60566 3.68034 3.81946 4.00159 4.05622 4.09719 4.20774 4.25802 4.28708 4.39046 4.41580 4.45096 4.54650 4.58056 4.66069 4.69667 4.73967 4.78962 4.87476 4.94694 4.98945 5.09390 5.12214 5.16445 5.24901 5.29207 5.35790 5.41038 5.58039 5.71649 5.74140 6.03110 6.10751 6.17427 6.21865 6.68712 6.98404 7.79585 8.76536 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.004261 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.998005 B = 6570.384243 C = 8590.403530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.463 3.537 4 O -0.531 6.531 5 C -0.105 4.105 6 C -0.076 4.076 7 H 0.090 0.910 8 C -0.134 4.134 9 C 0.040 3.960 10 N -0.516 5.516 11 C 0.103 3.897 12 C -0.190 4.190 13 C -0.057 4.057 14 C -0.208 4.208 15 C 0.117 3.883 16 O -0.234 6.234 17 C -0.411 4.411 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.922 5.922 21 Si 1.016 2.984 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.250 1.250 25 C -0.240 4.240 26 C -0.052 4.052 27 C 0.032 3.968 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.272 0.728 42 H 0.119 0.881 43 H 0.142 0.858 44 H 0.096 0.904 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 8.916 -15.756 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.308 3.692 4 O -0.420 6.420 5 C -0.143 4.143 6 C -0.095 4.095 7 H 0.108 0.892 8 C -0.172 4.172 9 C -0.088 4.088 10 N -0.238 5.238 11 C -0.025 4.025 12 C -0.192 4.192 13 C -0.075 4.075 14 C -0.227 4.227 15 C 0.067 3.933 16 O -0.141 6.141 17 C -0.487 4.487 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.835 3.165 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.173 1.173 25 C -0.259 4.259 26 C -0.071 4.071 27 C -0.096 4.096 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.156 0.844 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.160 0.840 44 H 0.114 0.886 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.163 9.470 -15.747 19.722 hybrid contribution -0.241 -1.593 1.229 2.026 sum -7.404 7.878 -14.519 18.101 Atomic orbital electron populations 1.23518 0.74932 1.05532 1.02516 1.86531 1.25053 1.33395 1.83789 1.24121 0.92831 0.81040 0.71213 1.90629 1.67899 1.36957 1.46555 1.21453 0.86425 0.99422 1.07014 1.22029 0.96258 0.92919 0.98268 0.89161 1.22765 0.99797 0.98089 0.96555 1.22864 0.91739 0.98287 0.95901 1.64067 1.02030 1.28047 1.29679 1.21264 0.92134 0.94381 0.94716 1.20394 1.06422 0.97097 0.95263 1.20863 0.96946 0.96898 0.92816 1.20417 1.09403 0.91942 1.00929 1.19905 0.94104 0.88727 0.90592 1.83948 1.78342 1.15805 1.36004 1.21815 1.46129 0.82442 0.98310 0.87909 1.26570 0.96535 1.03053 0.95850 1.70190 1.46676 1.30901 1.08244 0.84621 0.78633 0.74440 0.78772 1.18899 1.19813 1.17342 1.21239 1.09807 1.01007 0.93835 1.20940 0.95934 0.91290 0.98893 1.23389 0.93561 0.91528 1.01087 0.92378 0.91377 0.85478 0.84870 0.88250 0.93376 0.91200 0.92144 0.89922 0.88808 0.89304 0.84370 0.87646 0.91936 0.86323 0.84000 0.88595 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.37 -8.82 10.57 -51.46 -0.54 -9.37 16 3 C 0.46 11.59 7.81 71.23 0.56 12.15 16 4 O -0.53 -15.38 14.75 21.97 0.32 -15.06 16 5 C -0.11 -2.27 5.32 29.85 0.16 -2.11 16 6 C -0.08 -1.66 2.57 -9.41 -0.02 -1.68 16 7 H 0.09 2.00 7.87 -2.38 -0.02 1.99 16 8 C -0.13 -3.31 5.89 31.78 0.19 -3.12 16 9 C 0.04 0.88 6.40 86.65 0.55 1.44 16 10 N -0.52 -11.14 5.41 -890.09 -4.82 -15.96 16 11 C 0.10 2.19 5.52 85.56 0.47 2.66 16 12 C -0.19 -5.33 4.21 -19.83 -0.08 -5.42 16 13 C -0.06 -1.80 8.62 22.25 0.19 -1.61 16 14 C -0.21 -8.62 9.99 22.39 0.22 -8.39 16 15 C 0.12 5.64 6.65 22.58 0.15 5.79 16 16 O -0.23 -13.89 9.76 -22.76 -0.22 -14.11 16 17 C -0.41 -23.42 9.49 67.92 0.64 -22.77 16 18 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 19 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 20 N -0.92 -56.23 13.67 21.61 0.30 -55.94 16 21 Si 1.02 42.06 29.55 68.60 2.03 44.08 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 25 C -0.24 -9.75 9.17 22.39 0.21 -9.54 16 26 C -0.05 -1.60 7.40 22.25 0.16 -1.44 16 27 C 0.03 0.66 5.92 86.77 0.51 1.18 16 28 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 30 H 0.13 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.10 2.43 7.97 -2.39 -0.02 2.41 16 33 H 0.05 1.39 7.92 -2.38 -0.02 1.37 16 34 H 0.07 1.81 7.58 -2.39 -0.02 1.79 16 35 H 0.06 1.36 5.20 -2.39 -0.01 1.35 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.76 8.08 -2.39 -0.02 1.75 16 38 H 0.09 1.72 7.98 -2.39 -0.02 1.70 16 39 H 0.14 3.59 6.90 -2.91 -0.02 3.57 16 40 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 42 H 0.12 4.94 5.64 -2.91 -0.02 4.92 16 43 H 0.14 3.44 7.85 -2.92 -0.02 3.42 16 44 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 1.53 4.04 -2.38 -0.01 1.52 16 Total: -1.00 -71.79 363.47 3.64 -68.15 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 1.00 Total: 30.20 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 5.58 Total: -32.00 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -4.52 Total: -71.90 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.44 Total: -38.53 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -71.79 3.64 -68.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137122889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.572 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds