Wall clock time and date at job start Tue Mar 31 2020 12:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34836 * 117.00271 * 2 1 4 4 O 1.21575 * 119.99923 * 0.02562 * 3 2 1 5 5 C 1.47010 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39571 * 120.48404 * 354.26601 * 5 3 2 7 7 C 1.37798 * 120.14018 * 179.70317 * 6 5 3 8 8 C 1.39424 * 121.19719 * 0.02562 * 7 6 5 9 9 N 1.39151 * 119.49673 * 180.02562 * 8 7 6 10 10 C 1.46493 * 120.00519 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47462 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.48083 * 304.97675 * 11 10 9 13 13 C 1.53089 * 109.48421 * 184.94105 * 11 10 9 14 14 C 1.53178 * 109.16427 * 182.40805 * 13 11 10 15 15 C 1.53172 * 109.03756 * 56.98387 * 14 13 11 16 16 C 1.53096 * 109.16057 * 303.02010 * 15 14 13 17 17 O 1.42900 * 109.41684 * 57.60797 * 16 15 14 18 18 C 1.38438 * 120.99593 * 359.97438 * 8 7 6 19 19 C 1.40493 * 119.77238 * 0.02562 * 18 8 7 20 20 C 1.40948 * 120.56640 * 180.02562 * 19 18 8 21 21 H 1.07999 * 119.99660 * 146.88109 * 20 19 18 22 22 C 1.40249 * 119.99813 * 326.87578 * 20 19 18 23 23 N 1.30637 * 119.99377 * 166.49765 * 22 20 19 24 24 Si 1.86794 * 120.00099 * 346.50112 * 22 20 19 25 25 H 1.48501 * 109.47116 * 89.93871 * 24 22 20 26 26 H 1.48499 * 109.47146 * 209.93517 * 24 22 20 27 27 H 1.48494 * 109.47461 * 329.93657 * 24 22 20 28 28 H 1.09005 * 109.47175 * 59.99710 * 1 2 3 29 29 H 1.08996 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46890 * 299.99455 * 1 2 3 31 31 H 1.07995 * 119.93099 * 359.71930 * 6 5 3 32 32 H 1.08000 * 119.40583 * 180.02562 * 7 6 5 33 33 H 0.97007 * 119.99182 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.47216 * 299.99829 * 10 9 8 35 35 H 1.09001 * 109.46818 * 59.99734 * 10 9 8 36 36 H 1.08997 * 109.52474 * 302.31869 * 13 11 10 37 37 H 1.09003 * 109.52018 * 62.50430 * 13 11 10 38 38 H 1.09001 * 109.54171 * 297.11318 * 14 13 11 39 39 H 1.09004 * 109.61378 * 176.89237 * 14 13 11 40 40 H 1.08993 * 109.52680 * 183.11262 * 15 14 13 41 41 H 1.08999 * 109.52246 * 62.92138 * 15 14 13 42 42 H 1.09004 * 109.47963 * 297.61929 * 16 15 14 43 43 H 1.09006 * 109.47738 * 177.59158 * 16 15 14 44 44 H 1.08005 * 120.11111 * 179.97438 * 18 8 7 45 45 H 0.97001 * 119.99830 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2210 0.0005 5 6 3.5323 1.2783 0.0006 6 6 4.3019 0.1203 0.1213 7 6 5.6776 0.2000 0.1148 8 6 6.3294 1.4261 -0.0105 9 7 7.7203 1.4655 -0.0133 10 6 8.4886 0.2248 0.1142 11 6 9.9842 0.5455 0.0834 12 1 10.2166 1.1091 -0.8202 13 6 10.7864 -0.7584 0.0925 14 6 12.2819 -0.4286 0.1223 15 6 12.5769 0.4438 1.3463 16 6 11.7055 1.7013 1.2888 17 8 10.3287 1.3230 1.2318 18 6 5.6136 2.6047 -0.1333 19 6 4.2091 2.5714 -0.1316 20 6 3.4637 3.7611 -0.2561 21 1 2.5139 3.7519 -0.7702 22 6 3.9553 4.9567 0.2877 23 7 3.4126 6.0974 -0.0453 24 14 5.3860 4.9181 1.4880 25 1 6.6638 5.0223 0.7386 26 1 5.2713 6.0588 2.4318 27 1 5.3605 3.6425 2.2478 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.8183 -0.8403 0.2197 32 1 6.2616 -0.7036 0.2086 33 1 8.1812 2.3147 -0.0997 34 1 8.2409 -0.2606 1.0583 35 1 8.2423 -0.4416 -0.7125 36 1 10.5242 -1.3412 0.9754 37 1 10.5579 -1.3328 -0.8053 38 1 12.5543 0.1114 -0.7846 39 1 12.8589 -1.3513 0.1846 40 1 13.6288 0.7292 1.3453 41 1 12.3508 -0.1147 2.2546 42 1 11.9606 2.2800 0.4010 43 1 11.8800 2.3054 2.1792 44 1 6.1332 3.5467 -0.2291 45 1 3.7528 6.9244 0.3305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165240787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:07 Heat of formation + Delta-G solvation = -119.938451 kcal Electronic energy + Delta-G solvation = -26702.070571 eV Core-core repulsion = 22876.805356 eV Total energy + Delta-G solvation = -3825.265215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.70987 -39.16465 -37.82157 -35.50739 -34.74983 -33.85751 -33.51484 -31.84294 -30.46243 -28.91400 -27.29879 -26.00740 -25.31618 -24.17986 -22.40530 -22.04676 -20.96294 -20.48540 -19.30687 -17.43507 -16.78442 -16.70392 -16.55469 -15.85747 -15.65339 -15.28100 -15.22402 -14.83536 -14.55988 -14.45063 -13.78607 -13.57991 -13.43278 -13.15082 -12.92646 -12.68212 -12.45785 -12.38154 -12.29050 -11.90362 -11.61453 -11.49738 -11.39675 -11.28332 -11.13818 -10.94116 -10.76695 -10.67870 -10.41751 -10.19418 -9.88700 -9.71663 -9.63368 -9.25722 -9.02346 -8.82696 -7.64045 -6.97217 -6.56370 -4.54411 2.20582 2.71981 3.12859 3.20769 3.36268 3.56547 3.80748 3.91778 3.93074 4.00193 4.49130 4.55875 4.58292 4.59926 4.79929 4.94190 5.01858 5.19340 5.33684 5.42214 5.44329 5.51895 5.61424 5.65426 5.65972 5.73090 5.74105 5.83059 5.88316 5.90552 5.95693 6.04237 6.18664 6.37427 6.58448 6.64677 7.01323 7.03437 7.08580 7.33745 7.35518 7.56163 7.67347 7.85816 8.24890 8.34534 8.42826 8.69465 8.83051 9.17049 10.00608 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.003618 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.482579 B = 7737.160964 C = 9436.977492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.376 6.376 3 C 0.503 3.497 4 O -0.515 6.515 5 C -0.280 4.280 6 C 0.020 3.980 7 C -0.317 4.317 8 C 0.274 3.726 9 N -0.750 5.750 10 C 0.140 3.860 11 C 0.079 3.921 12 H 0.062 0.938 13 C -0.148 4.148 14 C -0.122 4.122 15 C -0.157 4.157 16 C 0.059 3.941 17 O -0.371 6.371 18 C -0.318 4.318 19 C 0.157 3.843 20 C -0.394 4.394 21 H 0.117 0.883 22 C 0.081 3.919 23 N -0.788 5.788 24 Si 0.921 3.079 25 H -0.270 1.270 26 H -0.293 1.293 27 H -0.243 1.243 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.395 0.605 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.817 -10.829 1.012 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.354 3.646 4 O -0.406 6.406 5 C -0.284 4.284 6 C 0.000 4.000 7 C -0.339 4.339 8 C 0.171 3.829 9 N -0.380 5.380 10 C 0.015 3.985 11 C 0.021 3.979 12 H 0.080 0.920 13 C -0.186 4.186 14 C -0.159 4.159 15 C -0.195 4.195 16 C -0.018 4.018 17 O -0.290 6.290 18 C -0.343 4.343 19 C 0.151 3.849 20 C -0.421 4.421 21 H 0.135 0.865 22 C -0.141 4.141 23 N -0.410 5.410 24 Si 0.748 3.252 25 H -0.196 1.196 26 H -0.221 1.221 27 H -0.166 1.166 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.229 0.771 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.125 0.875 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.433 -10.402 1.162 17.828 hybrid contribution 0.857 0.439 0.266 0.999 sum 15.289 -9.963 1.428 18.305 Atomic orbital electron populations 1.22955 0.78735 1.01883 1.01784 1.86576 1.21431 1.35212 1.86308 1.21229 0.89515 0.80243 0.73652 1.90791 1.66800 1.35114 1.47860 1.19507 0.86813 0.94541 1.27524 1.20691 0.92901 0.96115 0.90249 1.19769 0.94017 0.94773 1.25313 1.17593 0.81649 0.94110 0.89498 1.44444 1.03379 1.07669 1.82555 1.21212 0.87348 0.88331 1.01618 1.22374 0.94674 0.91845 0.89037 0.91977 1.22130 0.95227 0.97787 1.03438 1.21574 0.96049 1.00104 0.98182 1.22199 1.00181 0.97829 0.99247 1.22569 0.81780 0.95452 1.01978 1.88043 1.25273 1.71512 1.44213 1.20392 0.93639 0.95326 1.24902 1.18134 0.90105 0.91066 0.85571 1.20068 1.06327 0.89352 1.26316 0.86499 1.26415 0.96895 0.94453 0.96315 1.69590 1.37344 0.99230 1.34852 0.86195 0.79885 0.79079 0.80074 1.19583 1.22053 1.16554 0.92814 0.89539 0.92819 0.87439 0.88359 0.77144 0.91810 0.91174 0.90644 0.90521 0.91847 0.91394 0.91046 0.90996 0.93317 0.88904 0.87524 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.57 101.05 1.07 1.73 16 2 O -0.38 -7.76 9.85 -40.86 -0.40 -8.17 16 3 C 0.50 12.36 7.85 34.29 0.27 12.63 16 4 O -0.52 -14.07 13.57 -19.32 -0.26 -14.33 16 5 C -0.28 -6.95 6.07 -102.50 -0.62 -7.57 16 6 C 0.02 0.42 9.60 -39.25 -0.38 0.04 16 7 C -0.32 -6.43 9.24 -39.30 -0.36 -6.79 16 8 C 0.27 5.79 6.63 -84.02 -0.56 5.23 16 9 N -0.75 -12.97 5.65 -58.77 -0.33 -13.30 16 10 C 0.14 1.90 4.54 -4.05 -0.02 1.88 16 11 C 0.08 0.89 2.68 -26.69 -0.07 0.81 16 12 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 13 C -0.15 -1.29 5.42 -26.59 -0.14 -1.43 16 14 C -0.12 -0.91 6.03 -26.55 -0.16 -1.07 16 15 C -0.16 -1.21 6.14 -26.59 -0.16 -1.38 16 16 C 0.06 0.56 6.84 37.21 0.25 0.82 16 17 O -0.37 -4.76 10.35 -35.23 -0.36 -5.12 16 18 C -0.32 -7.63 7.00 -38.66 -0.27 -7.90 16 19 C 0.16 4.12 5.23 -104.68 -0.55 3.57 16 20 C -0.39 -11.19 8.38 -37.80 -0.32 -11.51 16 21 H 0.12 3.64 6.19 -52.49 -0.32 3.32 16 22 C 0.08 2.18 5.46 -17.30 -0.09 2.08 16 23 N -0.79 -21.35 13.92 55.56 0.77 -20.57 16 24 Si 0.92 21.45 24.52 -169.99 -4.17 17.28 16 25 H -0.27 -5.94 6.55 56.52 0.37 -5.57 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.24 -5.90 6.94 56.52 0.39 -5.51 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 2.04 7.63 -52.49 -0.40 1.64 16 32 H 0.10 1.72 6.58 -52.49 -0.35 1.37 16 33 H 0.39 6.64 8.46 -40.82 -0.35 6.29 16 34 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 35 H 0.07 0.88 7.90 -51.93 -0.41 0.47 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.11 2.54 4.71 -52.48 -0.25 2.29 16 45 H 0.29 7.00 8.29 -40.82 -0.34 6.66 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -31.38 361.47 -8.15 -39.53 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.73 Total: 8.10 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.11 Total: -8.86 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.44 Total: -33.87 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.03 Total: -27.62 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.17 Total: 17.28 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.38 -8.15 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165240787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.409 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds