Wall clock time and date at job start Tue Mar 31 2020 12:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34836 * 117.00271 * 2 1 4 4 O 1.21575 * 119.99923 * 0.02562 * 3 2 1 5 5 C 1.47010 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39571 * 120.48404 * 354.26601 * 5 3 2 7 7 C 1.37798 * 120.14018 * 179.70317 * 6 5 3 8 8 C 1.39424 * 121.19719 * 0.02562 * 7 6 5 9 9 N 1.39151 * 119.49673 * 180.02562 * 8 7 6 10 10 C 1.46493 * 120.00519 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47462 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.48083 * 304.97675 * 11 10 9 13 13 C 1.53089 * 109.48421 * 184.94105 * 11 10 9 14 14 C 1.53178 * 109.16427 * 182.40805 * 13 11 10 15 15 C 1.53172 * 109.03756 * 56.98387 * 14 13 11 16 16 C 1.53096 * 109.16057 * 303.02010 * 15 14 13 17 17 O 1.42900 * 109.41684 * 57.60797 * 16 15 14 18 18 C 1.38438 * 120.99593 * 359.97438 * 8 7 6 19 19 C 1.40493 * 119.77238 * 0.02562 * 18 8 7 20 20 C 1.40948 * 120.56640 * 180.02562 * 19 18 8 21 21 H 1.07999 * 119.99660 * 146.88109 * 20 19 18 22 22 C 1.40249 * 119.99813 * 326.87578 * 20 19 18 23 23 N 1.30637 * 119.99377 * 166.49765 * 22 20 19 24 24 Si 1.86794 * 120.00099 * 346.50112 * 22 20 19 25 25 H 1.48501 * 109.47116 * 89.93871 * 24 22 20 26 26 H 1.48499 * 109.47146 * 209.93517 * 24 22 20 27 27 H 1.48494 * 109.47461 * 329.93657 * 24 22 20 28 28 H 1.09005 * 109.47175 * 59.99710 * 1 2 3 29 29 H 1.08996 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46890 * 299.99455 * 1 2 3 31 31 H 1.07995 * 119.93099 * 359.71930 * 6 5 3 32 32 H 1.08000 * 119.40583 * 180.02562 * 7 6 5 33 33 H 0.97007 * 119.99182 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.47216 * 299.99829 * 10 9 8 35 35 H 1.09001 * 109.46818 * 59.99734 * 10 9 8 36 36 H 1.08997 * 109.52474 * 302.31869 * 13 11 10 37 37 H 1.09003 * 109.52018 * 62.50430 * 13 11 10 38 38 H 1.09001 * 109.54171 * 297.11318 * 14 13 11 39 39 H 1.09004 * 109.61378 * 176.89237 * 14 13 11 40 40 H 1.08993 * 109.52680 * 183.11262 * 15 14 13 41 41 H 1.08999 * 109.52246 * 62.92138 * 15 14 13 42 42 H 1.09004 * 109.47963 * 297.61929 * 16 15 14 43 43 H 1.09006 * 109.47738 * 177.59158 * 16 15 14 44 44 H 1.08005 * 120.11111 * 179.97438 * 18 8 7 45 45 H 0.97001 * 119.99830 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2210 0.0005 5 6 3.5323 1.2783 0.0006 6 6 4.3019 0.1203 0.1213 7 6 5.6776 0.2000 0.1148 8 6 6.3294 1.4261 -0.0105 9 7 7.7203 1.4655 -0.0133 10 6 8.4886 0.2248 0.1142 11 6 9.9842 0.5455 0.0834 12 1 10.2166 1.1091 -0.8202 13 6 10.7864 -0.7584 0.0925 14 6 12.2819 -0.4286 0.1223 15 6 12.5769 0.4438 1.3463 16 6 11.7055 1.7013 1.2888 17 8 10.3287 1.3230 1.2318 18 6 5.6136 2.6047 -0.1333 19 6 4.2091 2.5714 -0.1316 20 6 3.4637 3.7611 -0.2561 21 1 2.5139 3.7519 -0.7702 22 6 3.9553 4.9567 0.2877 23 7 3.4126 6.0974 -0.0453 24 14 5.3860 4.9181 1.4880 25 1 6.6638 5.0223 0.7386 26 1 5.2713 6.0588 2.4318 27 1 5.3605 3.6425 2.2478 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.8183 -0.8403 0.2197 32 1 6.2616 -0.7036 0.2086 33 1 8.1812 2.3147 -0.0997 34 1 8.2409 -0.2606 1.0583 35 1 8.2423 -0.4416 -0.7125 36 1 10.5242 -1.3412 0.9754 37 1 10.5579 -1.3328 -0.8053 38 1 12.5543 0.1114 -0.7846 39 1 12.8589 -1.3513 0.1846 40 1 13.6288 0.7292 1.3453 41 1 12.3508 -0.1147 2.2546 42 1 11.9606 2.2800 0.4010 43 1 11.8800 2.3054 2.1792 44 1 6.1332 3.5467 -0.2291 45 1 3.7528 6.9244 0.3305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165240787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:06 Heat of formation + Delta-G solvation = -140.437630 kcal Electronic energy + Delta-G solvation = -26702.959482 eV Core-core repulsion = 22876.805356 eV Total energy + Delta-G solvation = -3826.154126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.00648 -40.52780 -39.44797 -37.19239 -36.40742 -35.34144 -34.55408 -32.93468 -32.31917 -30.35172 -28.68716 -27.31209 -26.94962 -24.98125 -23.85688 -23.45524 -22.57742 -21.24889 -20.98863 -19.32376 -18.52931 -18.12348 -17.43370 -17.40673 -16.99723 -16.89091 -16.45199 -16.33341 -15.55656 -15.41194 -15.27786 -15.11076 -14.74420 -14.43326 -14.23752 -14.10550 -13.96792 -13.70567 -13.59039 -13.29813 -13.09638 -12.83415 -12.78960 -12.65256 -12.49650 -12.21135 -12.04532 -11.95136 -11.63536 -11.58121 -11.52761 -11.22805 -11.05597 -10.80487 -10.63804 -10.39628 -9.51151 -8.93778 -8.19206 -6.57955 0.36765 0.89209 1.23487 1.36214 1.47737 2.05950 2.10986 2.18596 2.55622 2.68596 2.80450 3.52533 3.73955 3.93423 3.94951 4.06090 4.17436 4.24578 4.26981 4.40239 4.44302 4.45675 4.49282 4.57600 4.65722 4.69995 4.76359 4.78967 4.80730 4.87206 4.91427 4.95909 5.07985 5.14793 5.20064 5.23727 5.27629 5.40414 5.57319 5.59651 5.80251 5.86683 6.03518 6.29468 6.34000 6.55278 6.73202 6.76852 6.94292 7.32378 8.11591 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.003618 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.482579 B = 7737.160964 C = 9436.977492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.501 3.499 4 O -0.556 6.556 5 C -0.313 4.313 6 C 0.026 3.974 7 C -0.299 4.299 8 C 0.284 3.716 9 N -0.740 5.740 10 C 0.133 3.867 11 C 0.081 3.919 12 H 0.066 0.934 13 C -0.143 4.143 14 C -0.121 4.121 15 C -0.153 4.153 16 C 0.052 3.948 17 O -0.401 6.401 18 C -0.338 4.338 19 C 0.147 3.853 20 C -0.440 4.440 21 H 0.070 0.930 22 C 0.045 3.955 23 N -0.833 5.833 24 Si 0.977 3.023 25 H -0.249 1.249 26 H -0.279 1.279 27 H -0.259 1.259 28 H 0.048 0.952 29 H 0.138 0.862 30 H 0.050 0.950 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.121 -14.182 1.515 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.288 6.288 3 C 0.353 3.647 4 O -0.450 6.450 5 C -0.316 4.316 6 C 0.007 3.993 7 C -0.322 4.322 8 C 0.178 3.822 9 N -0.368 5.368 10 C 0.009 3.991 11 C 0.023 3.977 12 H 0.084 0.916 13 C -0.181 4.181 14 C -0.158 4.158 15 C -0.191 4.191 16 C -0.025 4.025 17 O -0.321 6.321 18 C -0.362 4.362 19 C 0.143 3.857 20 C -0.468 4.468 21 H 0.088 0.912 22 C -0.171 4.171 23 N -0.459 5.459 24 Si 0.800 3.200 25 H -0.174 1.174 26 H -0.206 1.206 27 H -0.183 1.183 28 H 0.067 0.933 29 H 0.156 0.844 30 H 0.069 0.931 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.232 0.768 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.783 -13.785 1.652 22.561 hybrid contribution -0.101 1.169 0.087 1.176 sum 17.682 -12.616 1.739 21.791 Atomic orbital electron populations 1.23365 0.76103 1.05085 1.01486 1.86524 1.23928 1.32792 1.85583 1.21376 0.89835 0.80692 0.72799 1.90783 1.67713 1.36765 1.49733 1.19821 0.87565 0.95292 1.28971 1.21007 0.93362 0.96146 0.88774 1.20239 0.93876 0.95812 1.22225 1.17712 0.83483 0.93478 0.87554 1.44643 1.02076 1.09558 1.80547 1.21520 0.88504 0.86767 1.02271 1.22369 0.93353 0.93167 0.88812 0.91644 1.22109 0.95630 0.96360 1.04050 1.21597 0.95313 1.00768 0.98165 1.22172 1.00752 0.96948 0.99213 1.22753 0.80709 0.96520 1.02471 1.87989 1.27191 1.72040 1.44867 1.20401 0.92868 0.96591 1.26352 1.18365 0.91341 0.91125 0.84902 1.19873 1.05630 0.91579 1.29756 0.91178 1.27061 0.99056 0.93718 0.97275 1.69617 1.39448 0.99907 1.36901 0.85356 0.78007 0.78411 0.78201 1.17369 1.20617 1.18345 0.93291 0.84442 0.93143 0.84356 0.84322 0.76833 0.91869 0.89206 0.90905 0.89043 0.91357 0.89970 0.89361 0.91559 0.92750 0.88590 0.87832 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 10.57 113.37 1.20 2.23 16 2 O -0.37 -14.99 9.85 -57.48 -0.57 -15.56 16 3 C 0.50 25.30 7.85 70.12 0.55 25.85 16 4 O -0.56 -32.32 13.57 19.59 0.27 -32.05 16 5 C -0.31 -15.66 6.07 -18.49 -0.11 -15.77 16 6 C 0.03 1.06 9.60 22.49 0.22 1.27 16 7 C -0.30 -11.02 9.24 22.45 0.21 -10.81 16 8 C 0.28 11.28 6.63 38.31 0.25 11.53 16 9 N -0.74 -23.28 5.65 -339.84 -1.92 -25.20 16 10 C 0.13 3.07 4.54 86.38 0.39 3.46 16 11 C 0.08 1.54 2.68 30.62 0.08 1.62 16 12 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 13 C -0.14 -1.95 5.42 30.68 0.17 -1.78 16 14 C -0.12 -1.36 6.03 30.71 0.19 -1.18 16 15 C -0.15 -1.89 6.14 30.68 0.19 -1.70 16 16 C 0.05 0.85 6.84 72.01 0.49 1.34 16 17 O -0.40 -9.21 10.35 -148.98 -1.54 -10.76 16 18 C -0.34 -16.13 7.00 22.87 0.16 -15.97 16 19 C 0.15 8.01 5.23 -19.90 -0.10 7.91 16 20 C -0.44 -26.79 8.38 23.42 0.20 -26.59 16 21 H 0.07 4.81 6.19 -2.91 -0.02 4.79 16 22 C 0.05 2.58 5.46 85.36 0.47 3.05 16 23 N -0.83 -48.01 13.92 21.88 0.30 -47.71 16 24 Si 0.98 45.38 24.52 68.60 1.68 47.06 16 25 H -0.25 -10.53 6.55 99.48 0.65 -9.88 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.26 -12.58 6.94 99.48 0.69 -11.89 16 28 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.14 4.71 7.63 -2.91 -0.02 4.69 16 32 H 0.14 4.02 6.58 -2.91 -0.02 4.01 16 33 H 0.40 12.33 8.46 -92.70 -0.78 11.54 16 34 H 0.06 1.52 7.90 -2.38 -0.02 1.50 16 35 H 0.09 1.78 7.90 -2.39 -0.02 1.76 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.10 4.93 4.71 -2.91 -0.01 4.92 16 45 H 0.30 15.20 8.29 -92.71 -0.77 14.43 16 Total: -1.00 -73.75 361.47 2.91 -70.83 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.15 Total: 28.91 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 4.54 Total: -15.53 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.62 Total: -72.90 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -1.84 Total: -58.37 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.68 Total: 47.06 kcal Total: -73.75 2.91 -70.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165240787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.604 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds