Wall clock time and date at job start Tue Mar 31 2020 12:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34836 * 117.00378 * 2 1 4 4 O 1.21572 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.47005 * 120.00146 * 180.02562 * 3 2 1 6 6 C 1.39568 * 120.48649 * 354.32894 * 5 3 2 7 7 C 1.37805 * 120.14043 * 179.70931 * 6 5 3 8 8 C 1.39418 * 121.19945 * 0.02562 * 7 6 5 9 9 N 1.39147 * 119.49793 * 180.02562 * 8 7 6 10 10 C 1.46499 * 120.00206 * 0.02562 * 9 8 7 11 11 C 1.53003 * 109.46984 * 179.97438 * 10 9 8 12 12 H 1.09006 * 109.48168 * 60.02366 * 11 10 9 13 13 C 1.53091 * 109.48068 * 180.02562 * 11 10 9 14 14 C 1.53181 * 109.16045 * 177.58984 * 13 11 10 15 15 C 1.53177 * 109.03834 * 303.02262 * 14 13 11 16 16 C 1.53087 * 109.16427 * 56.98423 * 15 14 13 17 17 O 1.42906 * 109.48071 * 300.00382 * 11 10 9 18 18 C 1.38433 * 120.99334 * 359.97438 * 8 7 6 19 19 C 1.40504 * 119.77752 * 0.02562 * 18 8 7 20 20 C 1.40936 * 120.56839 * 180.02562 * 19 18 8 21 21 H 1.08002 * 119.99946 * 147.59493 * 20 19 18 22 22 C 1.40243 * 120.00397 * 327.59375 * 20 19 18 23 23 N 1.30642 * 119.99873 * 350.31832 * 22 20 19 24 24 Si 1.86806 * 120.00483 * 170.31984 * 22 20 19 25 25 H 1.48500 * 109.46429 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47369 * 119.99908 * 24 22 20 27 27 H 1.48491 * 109.47107 * 240.00496 * 24 22 20 28 28 H 1.09004 * 109.47018 * 300.00296 * 1 2 3 29 29 H 1.09002 * 109.47632 * 59.99486 * 1 2 3 30 30 H 1.09001 * 109.47837 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.93307 * 359.72319 * 6 5 3 32 32 H 1.08001 * 119.40072 * 180.02562 * 7 6 5 33 33 H 0.97006 * 119.99323 * 179.97438 * 9 8 7 34 34 H 1.08995 * 109.47233 * 299.99751 * 10 9 8 35 35 H 1.08992 * 109.46898 * 60.00353 * 10 9 8 36 36 H 1.09000 * 109.52491 * 297.50089 * 13 11 10 37 37 H 1.09002 * 109.51638 * 57.69320 * 13 11 10 38 38 H 1.09003 * 109.53725 * 183.15265 * 14 13 11 39 39 H 1.08993 * 109.54145 * 62.89346 * 14 13 11 40 40 H 1.08995 * 109.52354 * 297.07195 * 15 14 13 41 41 H 1.09003 * 109.56760 * 176.91823 * 15 14 13 42 42 H 1.08998 * 109.48469 * 182.40702 * 16 15 14 43 43 H 1.08997 * 109.49376 * 62.37592 * 16 15 14 44 44 H 1.08008 * 120.11104 * 179.97438 * 18 8 7 45 45 H 0.97009 * 119.99966 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2210 0.0005 5 6 3.5322 1.2782 -0.0006 6 6 4.3019 0.1200 0.1177 7 6 5.6777 0.1998 0.1104 8 6 6.3294 1.4260 -0.0136 9 7 7.7203 1.4654 -0.0174 10 6 8.4886 0.2243 0.1076 11 6 9.9843 0.5450 0.0749 12 1 10.2317 1.2099 0.9024 13 6 10.7874 -0.7518 0.2049 14 6 12.2819 -0.4292 0.1107 15 6 12.5547 0.2935 -1.2120 16 6 11.6834 1.5499 -1.2872 17 8 10.3079 1.1830 -1.1622 18 6 5.6135 2.6048 -0.1339 19 6 4.2089 2.5715 -0.1313 20 6 3.4635 3.7614 -0.2533 21 1 2.5080 3.7508 -0.7566 22 6 3.9625 4.9592 0.2788 23 7 5.0185 4.9425 1.0477 24 14 3.1172 6.5786 -0.1119 25 1 1.9518 6.3275 -0.9974 26 1 2.6532 7.2115 1.1487 27 1 4.0743 7.4838 -0.7972 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 3.8185 -0.8407 0.2150 32 1 6.2616 -0.7041 0.2023 33 1 8.1811 2.3146 -0.1036 34 1 8.2416 -0.2624 1.0511 35 1 8.2418 -0.4406 -0.7199 36 1 10.5750 -1.2169 1.1675 37 1 10.5107 -1.4337 -0.5992 38 1 12.8575 -1.3542 0.1464 39 1 12.5694 0.2129 0.9432 40 1 12.3138 -0.3673 -2.0446 41 1 13.6063 0.5758 -1.2636 42 1 11.8418 2.0455 -2.2450 43 1 11.9530 2.2285 -0.4779 44 1 6.1330 3.5469 -0.2287 45 1 5.3639 5.7710 1.4154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165240790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:12 Heat of formation + Delta-G solvation = -122.274516 kcal Electronic energy + Delta-G solvation = -26549.223720 eV Core-core repulsion = 22723.857206 eV Total energy + Delta-G solvation = -3825.366514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.59781 -39.07270 -37.56364 -35.40280 -34.64609 -33.77175 -33.46418 -31.68920 -29.62868 -28.75547 -27.20977 -25.86853 -25.36307 -24.09863 -22.29955 -21.88480 -20.66669 -20.37678 -19.30707 -17.30823 -16.63777 -16.47099 -16.31003 -15.67778 -15.55730 -15.21634 -15.06772 -14.84348 -14.51289 -14.41509 -13.51664 -13.41455 -13.21932 -12.88357 -12.81122 -12.64475 -12.38740 -12.30968 -12.05606 -11.53432 -11.51865 -11.39144 -11.32807 -11.11170 -11.00900 -10.89859 -10.82833 -10.56571 -10.41906 -10.17678 -9.83469 -9.57370 -9.51956 -9.34199 -8.85781 -8.71360 -7.35331 -6.82474 -6.28108 -4.41593 2.41435 2.87684 3.11028 3.20713 3.29456 3.66449 3.88710 3.97803 4.09587 4.14534 4.57833 4.64863 4.66837 4.71413 4.91268 5.03749 5.13698 5.28695 5.42346 5.52519 5.60353 5.63268 5.67763 5.69714 5.75523 5.77817 5.81835 5.92526 5.94513 5.99695 6.14694 6.17149 6.37652 6.54092 6.87067 7.02744 7.17449 7.20109 7.29797 7.49569 7.62997 7.73043 7.90080 8.07824 8.44440 8.60696 8.73782 8.85248 8.97373 9.24900 10.14442 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003398 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.019268 B = 8237.383632 C =10146.664776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.376 6.376 3 C 0.505 3.495 4 O -0.525 6.525 5 C -0.289 4.289 6 C 0.003 3.997 7 C -0.306 4.306 8 C 0.245 3.755 9 N -0.748 5.748 10 C 0.143 3.857 11 C 0.080 3.920 12 H 0.061 0.939 13 C -0.148 4.148 14 C -0.121 4.121 15 C -0.157 4.157 16 C 0.059 3.941 17 O -0.370 6.370 18 C -0.238 4.238 19 C 0.184 3.816 20 C -0.415 4.415 21 H 0.104 0.896 22 C 0.071 3.929 23 N -0.782 5.782 24 Si 0.915 3.085 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.273 1.273 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.395 0.605 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.120 0.880 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.832 -7.730 -1.051 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.357 3.643 4 O -0.416 6.416 5 C -0.292 4.292 6 C -0.016 4.016 7 C -0.328 4.328 8 C 0.144 3.856 9 N -0.380 5.380 10 C 0.017 3.983 11 C 0.022 3.978 12 H 0.079 0.921 13 C -0.186 4.186 14 C -0.159 4.159 15 C -0.194 4.194 16 C -0.018 4.018 17 O -0.289 6.289 18 C -0.262 4.262 19 C 0.179 3.821 20 C -0.443 4.443 21 H 0.122 0.878 22 C -0.148 4.148 23 N -0.406 5.406 24 Si 0.740 3.260 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.198 1.198 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.138 0.862 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.669 -7.463 -1.029 13.889 hybrid contribution 0.002 0.952 0.214 0.976 sum 11.671 -6.511 -0.815 13.389 Atomic orbital electron populations 1.22935 0.78993 1.01806 1.01630 1.86597 1.21230 1.35386 1.86303 1.21316 0.89610 0.80060 0.73332 1.90725 1.66931 1.35251 1.48701 1.19657 0.86541 0.95048 1.27982 1.20588 0.92946 0.95939 0.92169 1.19791 0.93933 0.94821 1.24265 1.17731 0.81817 0.94241 0.91859 1.44305 1.03284 1.07239 1.83180 1.21148 0.87253 0.88860 1.01008 1.22372 0.94949 0.93422 0.87075 0.92059 1.22140 0.95205 0.98113 1.03179 1.21573 0.96142 1.00665 0.97514 1.22197 1.00178 0.98535 0.98535 1.22553 0.81951 0.95262 1.01986 1.88042 1.25155 1.78397 1.37277 1.20601 0.93354 0.95139 1.17122 1.18110 0.90678 0.89772 0.83547 1.20184 1.04986 0.90944 1.28206 0.87836 1.26120 0.94141 1.01434 0.93091 1.69776 1.19262 1.29708 1.21887 0.86129 0.80321 0.80189 0.79410 1.17997 1.19869 1.19809 0.92916 0.92931 0.89626 0.87981 0.88894 0.77068 0.91645 0.92286 0.90593 0.90710 0.91483 0.91859 0.91046 0.91123 0.88959 0.93358 0.86176 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.57 101.05 1.07 1.74 16 2 O -0.38 -7.98 9.85 -40.86 -0.40 -8.38 16 3 C 0.51 12.65 7.85 34.28 0.27 12.92 16 4 O -0.52 -14.21 13.55 -19.32 -0.26 -14.47 16 5 C -0.29 -7.44 6.07 -102.50 -0.62 -8.06 16 6 C 0.00 0.06 9.60 -39.24 -0.38 -0.31 16 7 C -0.31 -6.66 9.24 -39.30 -0.36 -7.02 16 8 C 0.25 5.51 6.63 -84.03 -0.56 4.96 16 9 N -0.75 -13.86 5.60 -58.77 -0.33 -14.19 16 10 C 0.14 2.11 4.57 -4.04 -0.02 2.09 16 11 C 0.08 0.97 2.73 -26.68 -0.07 0.90 16 12 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 13 C -0.15 -1.42 5.42 -26.59 -0.14 -1.56 16 14 C -0.12 -0.99 6.03 -26.55 -0.16 -1.15 16 15 C -0.16 -1.30 6.14 -26.59 -0.16 -1.46 16 16 C 0.06 0.60 6.84 37.20 0.25 0.85 16 17 O -0.37 -4.97 10.15 -35.23 -0.36 -5.33 16 18 C -0.24 -6.06 8.46 -38.66 -0.33 -6.38 16 19 C 0.18 5.02 5.67 -104.68 -0.59 4.43 16 20 C -0.42 -11.52 7.86 -37.81 -0.30 -11.82 16 21 H 0.10 2.98 5.95 -52.49 -0.31 2.66 16 22 C 0.07 1.84 5.26 -17.30 -0.09 1.74 16 23 N -0.78 -20.11 11.06 55.56 0.61 -19.49 16 24 Si 0.92 19.58 29.57 -169.99 -5.03 14.55 16 25 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 2.09 7.63 -52.49 -0.40 1.69 16 32 H 0.09 1.77 6.58 -52.49 -0.35 1.43 16 33 H 0.40 7.19 8.33 -40.82 -0.34 6.85 16 34 H 0.07 0.93 7.90 -51.93 -0.41 0.52 16 35 H 0.06 0.90 7.90 -51.93 -0.41 0.49 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.12 3.14 6.49 -52.48 -0.34 2.80 16 45 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -30.67 366.80 -9.20 -39.87 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.77 Total: 10.07 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.19 Total: -8.15 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.29 Total: -33.68 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.02 Total: -28.18 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.67 -9.20 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165240790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.404 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds