Wall clock time and date at job start Tue Mar 31 2020 12:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34836 * 117.00378 * 2 1 4 4 O 1.21572 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.47005 * 120.00146 * 180.02562 * 3 2 1 6 6 C 1.39568 * 120.48649 * 354.32894 * 5 3 2 7 7 C 1.37805 * 120.14043 * 179.70931 * 6 5 3 8 8 C 1.39418 * 121.19945 * 0.02562 * 7 6 5 9 9 N 1.39147 * 119.49793 * 180.02562 * 8 7 6 10 10 C 1.46499 * 120.00206 * 0.02562 * 9 8 7 11 11 C 1.53003 * 109.46984 * 179.97438 * 10 9 8 12 12 H 1.09006 * 109.48168 * 60.02366 * 11 10 9 13 13 C 1.53091 * 109.48068 * 180.02562 * 11 10 9 14 14 C 1.53181 * 109.16045 * 177.58984 * 13 11 10 15 15 C 1.53177 * 109.03834 * 303.02262 * 14 13 11 16 16 C 1.53087 * 109.16427 * 56.98423 * 15 14 13 17 17 O 1.42906 * 109.48071 * 300.00382 * 11 10 9 18 18 C 1.38433 * 120.99334 * 359.97438 * 8 7 6 19 19 C 1.40504 * 119.77752 * 0.02562 * 18 8 7 20 20 C 1.40936 * 120.56839 * 180.02562 * 19 18 8 21 21 H 1.08002 * 119.99946 * 147.59493 * 20 19 18 22 22 C 1.40243 * 120.00397 * 327.59375 * 20 19 18 23 23 N 1.30642 * 119.99873 * 350.31832 * 22 20 19 24 24 Si 1.86806 * 120.00483 * 170.31984 * 22 20 19 25 25 H 1.48500 * 109.46429 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47369 * 119.99908 * 24 22 20 27 27 H 1.48491 * 109.47107 * 240.00496 * 24 22 20 28 28 H 1.09004 * 109.47018 * 300.00296 * 1 2 3 29 29 H 1.09002 * 109.47632 * 59.99486 * 1 2 3 30 30 H 1.09001 * 109.47837 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.93307 * 359.72319 * 6 5 3 32 32 H 1.08001 * 119.40072 * 180.02562 * 7 6 5 33 33 H 0.97006 * 119.99323 * 179.97438 * 9 8 7 34 34 H 1.08995 * 109.47233 * 299.99751 * 10 9 8 35 35 H 1.08992 * 109.46898 * 60.00353 * 10 9 8 36 36 H 1.09000 * 109.52491 * 297.50089 * 13 11 10 37 37 H 1.09002 * 109.51638 * 57.69320 * 13 11 10 38 38 H 1.09003 * 109.53725 * 183.15265 * 14 13 11 39 39 H 1.08993 * 109.54145 * 62.89346 * 14 13 11 40 40 H 1.08995 * 109.52354 * 297.07195 * 15 14 13 41 41 H 1.09003 * 109.56760 * 176.91823 * 15 14 13 42 42 H 1.08998 * 109.48469 * 182.40702 * 16 15 14 43 43 H 1.08997 * 109.49376 * 62.37592 * 16 15 14 44 44 H 1.08008 * 120.11104 * 179.97438 * 18 8 7 45 45 H 0.97009 * 119.99966 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2210 0.0005 5 6 3.5322 1.2782 -0.0006 6 6 4.3019 0.1200 0.1177 7 6 5.6777 0.1998 0.1104 8 6 6.3294 1.4260 -0.0136 9 7 7.7203 1.4654 -0.0174 10 6 8.4886 0.2243 0.1076 11 6 9.9843 0.5450 0.0749 12 1 10.2317 1.2099 0.9024 13 6 10.7874 -0.7518 0.2049 14 6 12.2819 -0.4292 0.1107 15 6 12.5547 0.2935 -1.2120 16 6 11.6834 1.5499 -1.2872 17 8 10.3079 1.1830 -1.1622 18 6 5.6135 2.6048 -0.1339 19 6 4.2089 2.5715 -0.1313 20 6 3.4635 3.7614 -0.2533 21 1 2.5080 3.7508 -0.7566 22 6 3.9625 4.9592 0.2788 23 7 5.0185 4.9425 1.0477 24 14 3.1172 6.5786 -0.1119 25 1 1.9518 6.3275 -0.9974 26 1 2.6532 7.2115 1.1487 27 1 4.0743 7.4838 -0.7972 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 3.8185 -0.8407 0.2150 32 1 6.2616 -0.7041 0.2023 33 1 8.1811 2.3146 -0.1036 34 1 8.2416 -0.2624 1.0511 35 1 8.2418 -0.4406 -0.7199 36 1 10.5750 -1.2169 1.1675 37 1 10.5107 -1.4337 -0.5992 38 1 12.8575 -1.3542 0.1464 39 1 12.5694 0.2129 0.9432 40 1 12.3138 -0.3673 -2.0446 41 1 13.6063 0.5758 -1.2636 42 1 11.8418 2.0455 -2.2450 43 1 11.9530 2.2285 -0.4779 44 1 6.1330 3.5469 -0.2287 45 1 5.3639 5.7710 1.4154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165240790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:11 Heat of formation + Delta-G solvation = -140.275839 kcal Electronic energy + Delta-G solvation = -26550.004316 eV Core-core repulsion = 22723.857206 eV Total energy + Delta-G solvation = -3826.147110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.92260 -40.49871 -39.25963 -37.12747 -36.34925 -35.24640 -34.54728 -32.86191 -31.51496 -30.25652 -28.63843 -27.24298 -27.03398 -24.97583 -23.66325 -23.48586 -22.30798 -21.24052 -21.02768 -19.17733 -18.33494 -17.83915 -17.40832 -17.35049 -16.96095 -16.83903 -16.38153 -16.35563 -15.41453 -15.36347 -15.12703 -14.70519 -14.64064 -14.53335 -14.07269 -14.05371 -13.90861 -13.57442 -13.37062 -13.06639 -12.95529 -12.83722 -12.77037 -12.65923 -12.43237 -12.18354 -12.05309 -11.94750 -11.58570 -11.51300 -11.39134 -11.23720 -11.17660 -10.69704 -10.51898 -10.38106 -9.27738 -8.71354 -8.00599 -6.42198 0.52641 1.07541 1.34653 1.50124 1.53215 2.18552 2.21383 2.23992 2.66430 2.78407 2.87720 3.72751 3.76447 3.93977 3.94971 4.06879 4.18354 4.28375 4.39032 4.41952 4.46974 4.50444 4.54487 4.65840 4.67447 4.73210 4.80106 4.83998 4.89666 4.95231 5.06870 5.09625 5.14575 5.15268 5.20244 5.29462 5.40357 5.47670 5.67177 5.81153 5.91401 6.08403 6.11779 6.31174 6.54419 6.84080 6.87886 6.93716 7.12965 7.37655 8.27490 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.003398 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.019268 B = 8237.383632 C =10146.664776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.504 3.496 4 O -0.557 6.557 5 C -0.323 4.323 6 C 0.007 3.993 7 C -0.301 4.301 8 C 0.255 3.745 9 N -0.741 5.741 10 C 0.137 3.863 11 C 0.084 3.916 12 H 0.062 0.938 13 C -0.144 4.144 14 C -0.120 4.120 15 C -0.153 4.153 16 C 0.052 3.948 17 O -0.399 6.399 18 C -0.265 4.265 19 C 0.158 3.842 20 C -0.455 4.455 21 H 0.081 0.919 22 C 0.035 3.965 23 N -0.807 5.807 24 Si 0.980 3.020 25 H -0.269 1.269 26 H -0.264 1.264 27 H -0.253 1.253 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.396 0.604 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.104 0.896 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.499 -9.467 -0.656 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.292 6.292 3 C 0.357 3.643 4 O -0.452 6.452 5 C -0.326 4.326 6 C -0.012 4.012 7 C -0.323 4.323 8 C 0.150 3.850 9 N -0.370 5.370 10 C 0.013 3.987 11 C 0.026 3.974 12 H 0.080 0.920 13 C -0.182 4.182 14 C -0.158 4.158 15 C -0.190 4.190 16 C -0.025 4.025 17 O -0.319 6.319 18 C -0.290 4.290 19 C 0.153 3.847 20 C -0.483 4.483 21 H 0.099 0.901 22 C -0.181 4.181 23 N -0.432 5.432 24 Si 0.801 3.199 25 H -0.193 1.193 26 H -0.189 1.189 27 H -0.177 1.177 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.230 0.770 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.390 -9.243 -0.629 16.282 hybrid contribution -0.442 1.301 0.084 1.376 sum 12.948 -7.942 -0.545 15.200 Atomic orbital electron populations 1.23355 0.76145 1.04973 1.01571 1.86541 1.23950 1.33082 1.85633 1.21319 0.89669 0.80626 0.72724 1.90696 1.67612 1.36575 1.50272 1.19958 0.87603 0.95631 1.29446 1.20882 0.93363 0.96086 0.90836 1.20161 0.93913 0.95631 1.22548 1.17846 0.83575 0.93691 0.89850 1.44471 1.02057 1.08956 1.81506 1.21416 0.88660 0.87070 1.01536 1.22328 0.93410 0.94880 0.86803 0.91994 1.22118 0.95791 0.96450 1.03840 1.21596 0.95167 1.01526 0.97480 1.22169 1.00825 0.97482 0.98543 1.22755 0.80779 0.96425 1.02506 1.87990 1.27268 1.78858 1.37809 1.20482 0.93066 0.95717 1.19717 1.18477 0.91740 0.90591 0.83868 1.20170 1.04834 0.92756 1.30589 0.90141 1.26815 0.94827 1.03992 0.92499 1.69793 1.20151 1.30972 1.22275 0.85192 0.79088 0.76343 0.79282 1.19299 1.18883 1.17741 0.93086 0.93030 0.84760 0.85269 0.85428 0.77048 0.90294 0.92347 0.89216 0.90969 0.89855 0.91365 0.91543 0.89206 0.88495 0.92862 0.87803 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.57 113.37 1.20 2.24 16 2 O -0.37 -15.62 9.85 -57.49 -0.57 -16.18 16 3 C 0.50 25.86 7.85 70.12 0.55 26.41 16 4 O -0.56 -31.53 13.55 19.60 0.27 -31.26 16 5 C -0.32 -17.02 6.07 -18.49 -0.11 -17.14 16 6 C 0.01 0.33 9.60 22.49 0.22 0.54 16 7 C -0.30 -12.58 9.24 22.45 0.21 -12.38 16 8 C 0.25 11.43 6.63 38.31 0.25 11.68 16 9 N -0.74 -26.87 5.60 -339.86 -1.90 -28.77 16 10 C 0.14 3.77 4.57 86.38 0.39 4.16 16 11 C 0.08 1.88 2.73 30.63 0.08 1.96 16 12 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 13 C -0.14 -2.35 5.42 30.69 0.17 -2.19 16 14 C -0.12 -1.59 6.03 30.71 0.19 -1.41 16 15 C -0.15 -2.15 6.14 30.68 0.19 -1.96 16 16 C 0.05 0.95 6.84 72.01 0.49 1.45 16 17 O -0.40 -10.26 10.15 -148.98 -1.51 -11.77 16 18 C -0.26 -13.98 8.46 22.87 0.19 -13.79 16 19 C 0.16 9.01 5.67 -19.90 -0.11 8.90 16 20 C -0.46 -26.72 7.86 23.42 0.18 -26.54 16 21 H 0.08 4.96 5.95 -2.91 -0.02 4.94 16 22 C 0.04 1.88 5.26 85.36 0.45 2.33 16 23 N -0.81 -42.92 11.06 21.88 0.24 -42.67 16 24 Si 0.98 41.50 29.57 68.60 2.03 43.53 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 27 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.13 4.98 7.63 -2.91 -0.02 4.96 16 32 H 0.13 4.42 6.58 -2.91 -0.02 4.40 16 33 H 0.40 14.38 8.33 -92.70 -0.77 13.61 16 34 H 0.08 1.99 7.90 -2.39 -0.02 1.98 16 35 H 0.06 1.65 7.90 -2.39 -0.02 1.63 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 5.70 6.49 -2.91 -0.02 5.68 16 45 H 0.29 13.80 8.29 -92.70 -0.77 13.03 16 Total: -1.00 -70.11 366.80 3.32 -66.79 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.23 Total: 36.06 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.54 Total: -15.72 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.66 Total: -71.44 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -1.81 Total: -59.22 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -70.11 3.32 -66.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165240790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.490 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds