Wall clock time and date at job start Tue Mar 31 2020 12:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 117.00070 * 2 1 4 4 O 1.20823 * 120.00136 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99936 * 179.97438 * 3 2 1 6 6 N 1.46502 * 110.43480 * 325.94780 * 5 3 2 7 7 C 1.39942 * 119.99791 * 302.87539 * 6 5 3 8 8 C 1.38861 * 120.01675 * 175.29260 * 7 6 5 9 9 C 1.38103 * 119.97964 * 179.97438 * 8 7 6 10 10 C 1.38700 * 120.02020 * 359.97290 * 9 8 7 11 11 O 1.36002 * 119.98169 * 180.02562 * 10 9 8 12 12 C 1.42907 * 116.99900 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46722 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00597 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99912 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99872 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00372 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46976 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47251 * 119.99999 * 17 15 13 20 20 H 1.48503 * 109.47595 * 240.00215 * 17 15 13 21 21 C 1.38697 * 120.03912 * 0.28060 * 10 9 8 22 22 C 1.38114 * 120.01857 * 359.49079 * 21 10 9 23 23 C 1.54897 * 110.59596 * 88.56411 * 5 3 2 24 24 C 1.54892 * 102.74241 * 156.67581 * 23 5 3 25 25 C 1.54259 * 104.19726 * 322.05469 * 24 23 5 26 26 C 1.53866 * 106.60048 * 23.61469 * 25 24 23 27 27 H 1.09001 * 109.46863 * 300.00055 * 1 2 3 28 28 H 1.08997 * 109.47282 * 59.99522 * 1 2 3 29 29 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 30 30 H 0.96998 * 119.99947 * 122.87308 * 6 5 3 31 31 H 1.08003 * 120.00846 * 359.95360 * 8 7 6 32 32 H 1.08004 * 119.99160 * 180.02562 * 9 8 7 33 33 H 1.08996 * 109.46919 * 299.99590 * 12 11 10 34 34 H 1.08996 * 109.47359 * 60.00031 * 12 11 10 35 35 H 0.96997 * 120.00009 * 179.97438 * 16 15 13 36 36 H 1.08003 * 119.99702 * 179.72087 * 21 10 9 37 37 H 1.07995 * 120.01317 * 180.25999 * 22 21 10 38 38 H 1.08994 * 110.75242 * 274.98819 * 23 5 3 39 39 H 1.08996 * 110.75124 * 38.36326 * 23 5 3 40 40 H 1.09001 * 110.47977 * 203.37364 * 24 23 5 41 41 H 1.08996 * 110.48586 * 80.74218 * 24 23 5 42 42 H 1.08998 * 110.03380 * 264.32623 * 25 24 23 43 43 H 1.09006 * 110.02978 * 142.89920 * 25 24 23 44 44 H 1.09003 * 110.03778 * 240.71115 * 26 25 24 45 45 H 1.09008 * 110.03679 * 119.28388 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1364 0.1659 0.7697 7 6 3.7727 -0.0167 2.1087 8 6 4.2356 -1.1224 2.8097 9 6 3.8767 -1.3015 4.1312 10 6 3.0546 -0.3771 4.7584 11 8 2.7020 -0.5539 6.0600 12 6 1.8525 0.4367 6.6424 13 6 1.5704 0.0753 8.0779 14 1 1.9968 -0.8213 8.5029 15 6 0.7680 0.8894 8.8489 16 7 0.2483 1.9811 8.3312 17 14 0.4188 0.4419 10.6285 18 1 1.1166 -0.8246 10.9665 19 1 0.9065 1.5275 11.5168 20 1 -1.0438 0.2674 10.8174 21 6 2.5875 0.7249 4.0575 22 6 2.9493 0.9081 2.7372 23 6 4.1130 1.2668 -1.4487 24 6 5.4983 1.9424 -1.2951 25 6 5.2643 3.0520 -0.2494 26 6 4.0360 2.6276 0.5744 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.7658 -0.4418 0.3509 31 1 4.8759 -1.8422 2.3215 32 1 4.2369 -2.1612 4.6767 33 1 2.3460 1.4077 6.6020 34 1 0.9148 0.4824 6.0886 35 1 -0.3165 2.5536 8.8734 36 1 1.9438 1.4419 4.5452 37 1 2.5890 1.7683 2.1927 38 1 4.2196 0.2460 -1.8156 39 1 3.4696 1.8500 -2.1074 40 1 5.8197 2.3733 -2.2433 41 1 6.2344 1.2251 -0.9322 42 1 5.0690 4.0008 -0.7490 43 1 6.1355 3.1434 0.3993 44 1 3.2445 3.3704 0.4747 45 1 4.3110 2.5131 1.6230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167716979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:56 Heat of formation + Delta-G solvation = -99.287091 kcal Electronic energy + Delta-G solvation = -27281.060905 eV Core-core repulsion = 23456.691201 eV Total energy + Delta-G solvation = -3824.369704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18747 -39.35104 -38.44932 -36.77655 -36.31698 -33.65395 -32.75999 -30.70762 -29.70723 -29.01589 -27.99782 -27.40445 -26.43146 -23.48021 -22.87539 -22.00164 -21.06213 -20.72836 -19.72780 -18.07455 -17.49249 -16.94067 -16.63957 -16.36313 -16.29051 -15.87211 -15.15214 -14.74552 -14.46560 -14.33175 -14.04672 -13.98184 -13.58503 -13.30763 -12.92676 -12.88836 -12.68925 -12.42437 -12.19383 -12.08396 -11.72161 -11.59723 -11.54120 -11.45676 -11.38045 -11.08679 -10.90938 -10.82795 -10.78383 -10.69893 -10.41251 -10.24091 -10.07750 -9.18943 -9.09390 -8.57606 -8.45339 -6.69768 -6.20309 -4.23509 1.76987 2.03766 2.13403 2.63279 3.25390 3.31826 3.33067 3.38149 4.08869 4.13843 4.23845 4.36566 4.50588 4.67185 4.83460 5.03401 5.05134 5.07705 5.11963 5.16167 5.16726 5.25628 5.31658 5.33948 5.39625 5.49780 5.55942 5.64564 5.80377 5.82519 5.89475 5.91947 6.01252 6.08318 6.32359 6.39083 6.58678 6.64083 6.86787 7.07082 7.13437 7.23170 7.45233 7.69550 7.73334 7.81706 8.02831 8.59772 8.92152 9.41690 10.91053 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.003006 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.618917 B = 9313.384499 C = 9596.414056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.342 6.342 3 C 0.460 3.540 4 O -0.508 6.508 5 C 0.196 3.804 6 N -0.731 5.731 7 C 0.157 3.843 8 C -0.145 4.145 9 C -0.124 4.124 10 C 0.108 3.892 11 O -0.322 6.322 12 C 0.194 3.806 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.912 3.088 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.165 4.165 22 C -0.158 4.158 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.401 0.599 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 -1.893 -22.722 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.257 6.257 3 C 0.301 3.699 4 O -0.395 6.395 5 C 0.105 3.895 6 N -0.367 5.367 7 C 0.059 3.941 8 C -0.167 4.167 9 C -0.143 4.143 10 C 0.060 3.940 11 O -0.235 6.235 12 C 0.121 3.879 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.739 3.261 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.185 4.185 22 C -0.180 4.180 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.176 4.176 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.236 0.764 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.063 -1.454 -22.547 23.989 hybrid contribution -0.584 0.028 0.737 0.941 sum 7.479 -1.426 -21.810 23.100 Atomic orbital electron populations 1.23297 0.76624 1.03764 1.02463 1.86575 1.23049 1.32921 1.83199 1.24272 0.92253 0.81644 0.71696 1.90665 1.66739 1.36454 1.45663 1.20767 0.84614 0.89915 0.94183 1.44193 1.51548 1.32269 1.08738 1.17448 0.97516 0.95089 0.84049 1.20200 1.04644 0.97660 0.94229 1.20169 1.00366 0.99732 0.94077 1.19075 0.95311 0.93943 0.85714 1.86111 1.65556 1.51489 1.20367 1.20563 0.87828 0.86125 0.93340 1.21033 1.30643 1.09787 0.94472 0.91146 1.24944 0.95258 0.94659 0.99445 1.69967 1.32934 1.13394 1.37034 0.86213 0.78091 0.78646 0.83181 1.19360 1.20704 1.20713 1.21234 1.03262 0.99197 0.94794 1.20556 1.02362 0.99757 0.95339 1.22732 0.97715 1.02528 0.92594 1.22352 0.95922 0.97962 0.99490 1.22079 0.97775 0.98519 0.97254 1.22790 0.98957 0.94426 1.01443 0.91597 0.92189 0.88116 0.76356 0.86194 0.85633 0.96336 0.96404 0.92461 0.85106 0.86777 0.89729 0.89557 0.90876 0.90915 0.91353 0.91173 0.89164 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.34 -4.60 10.15 -39.26 -0.40 -5.00 16 3 C 0.46 6.30 4.47 36.01 0.16 6.46 16 4 O -0.51 -8.06 15.18 -18.75 -0.28 -8.34 16 5 C 0.20 2.14 0.75 -131.31 -0.10 2.04 16 6 N -0.73 -8.09 5.06 -45.47 -0.23 -8.32 16 7 C 0.16 2.30 5.99 -83.69 -0.50 1.80 16 8 C -0.15 -2.11 9.89 -39.40 -0.39 -2.50 16 9 C -0.12 -2.17 9.98 -39.46 -0.39 -2.56 16 10 C 0.11 2.28 6.69 -39.24 -0.26 2.02 16 11 O -0.32 -8.07 10.12 -19.75 -0.20 -8.27 16 12 C 0.19 5.33 4.49 36.00 0.16 5.50 16 13 C -0.52 -15.23 9.43 -34.44 -0.32 -15.55 16 14 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 17 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.17 -3.34 9.03 -39.46 -0.36 -3.70 16 22 C -0.16 -2.72 7.42 -39.40 -0.29 -3.01 16 23 C -0.12 -0.90 5.83 -24.73 -0.14 -1.05 16 24 C -0.12 -0.78 6.79 -25.07 -0.17 -0.95 16 25 C -0.12 -0.97 6.80 -25.62 -0.17 -1.15 16 26 C -0.14 -1.53 4.79 -25.62 -0.12 -1.66 16 27 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.40 3.44 8.51 -40.82 -0.35 3.10 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 33 H 0.02 0.53 7.67 -51.93 -0.40 0.13 16 34 H 0.02 0.51 7.65 -51.93 -0.40 0.12 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.13 2.84 6.29 -52.48 -0.33 2.51 16 37 H 0.11 1.93 4.53 -52.49 -0.24 1.69 16 38 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 1.11 6.79 -51.93 -0.35 0.76 16 45 H 0.09 1.14 6.12 -51.92 -0.32 0.82 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -32.76 365.96 -8.39 -41.15 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.57 Total: 3.69 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.94 Total: -11.30 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.51 Total: -34.04 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.88 Total: -21.61 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.76 -8.39 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167716979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.134 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds