Wall clock time and date at job start Tue Mar 31 2020 12:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34837 * 116.99824 * 2 1 4 4 O 1.21565 * 120.00502 * 359.97438 * 3 2 1 5 5 C 1.47018 * 119.99767 * 180.02562 * 3 2 1 6 6 C 1.39574 * 120.48623 * 354.44178 * 5 3 2 7 7 C 1.37793 * 120.14206 * 180.02562 * 6 5 3 8 8 C 1.39413 * 121.19733 * 0.02562 * 7 6 5 9 9 N 1.39156 * 119.50270 * 180.02562 * 8 7 6 10 10 C 1.46500 * 119.99681 * 352.58241 * 9 8 7 11 11 C 1.53003 * 110.43464 * 300.91561 * 10 9 8 12 12 O 1.42896 * 109.46963 * 305.05659 * 11 10 9 13 13 C 1.54887 * 110.48555 * 178.37468 * 10 9 8 14 14 C 1.55243 * 102.58863 * 279.18596 * 13 10 9 15 15 C 1.54262 * 104.22863 * 322.08443 * 14 13 10 16 16 C 1.53871 * 106.60074 * 23.61212 * 15 14 13 17 17 C 1.38442 * 121.00113 * 359.97438 * 8 7 6 18 18 C 1.40500 * 119.76351 * 0.02562 * 17 8 7 19 19 C 1.40945 * 120.56473 * 179.97438 * 18 17 8 20 20 H 1.08003 * 120.00436 * 143.61609 * 19 18 17 21 21 C 1.40249 * 119.99790 * 323.60966 * 19 18 17 22 22 N 1.30641 * 120.00204 * 350.04971 * 21 19 18 23 23 Si 1.86800 * 120.00094 * 170.04665 * 21 19 18 24 24 H 1.48496 * 109.46886 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47207 * 120.00495 * 23 21 19 26 26 H 1.48502 * 109.46964 * 240.00141 * 23 21 19 27 27 H 1.09005 * 109.47316 * 60.00320 * 1 2 3 28 28 H 1.08996 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47331 * 300.00118 * 1 2 3 30 30 H 1.08008 * 119.92639 * 359.73889 * 6 5 3 31 31 H 1.08002 * 119.40334 * 179.97438 * 7 6 5 32 32 H 0.96995 * 119.99858 * 172.58690 * 9 8 7 33 33 H 1.08998 * 109.47209 * 65.05881 * 11 10 9 34 34 H 1.09001 * 109.47026 * 185.06315 * 11 10 9 35 35 H 0.96698 * 114.00242 * 179.97438 * 12 11 10 36 36 H 1.09004 * 110.75568 * 37.57753 * 13 10 9 37 37 H 1.08997 * 110.75936 * 160.94878 * 13 10 9 38 38 H 1.08992 * 110.47111 * 203.39392 * 14 13 10 39 39 H 1.08999 * 110.58129 * 80.82833 * 14 13 10 40 40 H 1.09000 * 110.03422 * 264.31983 * 15 14 13 41 41 H 1.09005 * 110.03155 * 142.89589 * 15 14 13 42 42 H 1.09001 * 110.03135 * 240.71254 * 16 15 14 43 43 H 1.09002 * 110.03623 * 119.28446 * 16 15 14 44 44 H 1.07994 * 120.12159 * 180.02562 * 17 8 7 45 45 H 0.96998 * 120.00726 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4021 2.2210 -0.0005 5 6 3.5323 1.2784 -0.0006 6 6 4.3021 0.1199 0.1154 7 6 5.6777 0.2003 0.1146 8 6 6.3293 1.4274 -0.0003 9 7 7.7202 1.4676 0.0023 10 6 8.4876 0.2526 0.2872 11 6 8.1297 -0.2931 1.6711 12 8 8.3196 0.7302 2.6502 13 6 10.0072 0.5366 0.1928 14 6 10.2689 0.4738 -1.3361 15 6 9.3636 -0.6740 -1.8289 16 6 8.2310 -0.8146 -0.7969 17 6 5.6135 2.6066 -0.1179 18 6 4.2089 2.5724 -0.1217 19 6 3.4634 3.7627 -0.2401 20 1 2.5415 3.7689 -0.8027 21 6 3.9186 4.9391 0.3729 22 7 4.9209 4.8941 1.2097 23 14 3.0920 6.5706 -0.0071 24 1 1.9909 6.3529 -0.9794 25 1 2.5409 7.1497 1.2443 26 1 4.0876 7.5063 -0.5890 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.8185 -0.8412 0.2106 31 1 6.2617 -0.7037 0.2054 32 1 8.1817 2.3001 -0.1844 33 1 7.0877 -0.6130 1.6772 34 1 8.7720 -1.1424 1.9040 35 1 8.1109 0.4542 3.5532 36 1 10.2406 1.5257 0.5869 37 1 10.5771 -0.2325 0.7142 38 1 11.3160 0.2457 -1.5346 39 1 9.9871 1.4131 -1.8120 40 1 9.9339 -1.6011 -1.8862 41 1 8.9492 -0.4291 -2.8069 42 1 8.2516 -1.8100 -0.3532 43 1 7.2670 -0.6379 -1.2739 44 1 6.1328 3.5493 -0.2065 45 1 5.2360 5.7077 1.6334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167807311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:57 Heat of formation + Delta-G solvation = -112.175975 kcal Electronic energy + Delta-G solvation = -27745.229981 eV Core-core repulsion = 23920.301373 eV Total energy + Delta-G solvation = -3824.928608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.63934 -39.01149 -36.89608 -35.83415 -35.14320 -33.90186 -32.86331 -30.01166 -29.43707 -28.75815 -27.87278 -26.47655 -25.28534 -24.13235 -22.03886 -21.27852 -20.20454 -19.67401 -19.04670 -17.21707 -16.94694 -16.53555 -16.12781 -15.83191 -15.31300 -15.25536 -15.09135 -14.68622 -14.41269 -13.92198 -13.49704 -13.10581 -12.86409 -12.66694 -12.44991 -12.29732 -12.13590 -12.03326 -11.67506 -11.47589 -11.27454 -11.18897 -11.08549 -11.03242 -10.90337 -10.75802 -10.58460 -10.46155 -10.26428 -10.19647 -9.84789 -9.69684 -9.39288 -9.28812 -8.80542 -8.74211 -7.31795 -6.78769 -6.26426 -4.39614 2.40877 2.87485 3.12287 3.21475 3.27690 3.86948 3.99720 4.06473 4.13624 4.38771 4.68788 4.72827 4.85553 5.02361 5.38067 5.50935 5.57103 5.59583 5.65657 5.65986 5.66963 5.74807 5.82401 5.90678 5.90947 5.97785 6.03781 6.12687 6.16347 6.25766 6.30036 6.37774 6.51718 6.54410 6.89598 7.02166 7.20103 7.29178 7.47973 7.64247 7.70286 7.87799 7.93806 8.08066 8.46087 8.60291 8.75515 8.84373 8.97094 9.23670 10.19181 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.004769 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.952535 B = 5869.573297 C = 7403.647891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.377 6.377 3 C 0.504 3.496 4 O -0.523 6.523 5 C -0.286 4.286 6 C -0.001 4.001 7 C -0.313 4.313 8 C 0.255 3.745 9 N -0.729 5.729 10 C 0.190 3.810 11 C 0.061 3.939 12 O -0.558 6.558 13 C -0.118 4.118 14 C -0.124 4.124 15 C -0.119 4.119 16 C -0.142 4.142 17 C -0.235 4.235 18 C 0.189 3.811 19 C -0.419 4.419 20 H 0.100 0.900 21 C 0.073 3.927 22 N -0.781 5.781 23 Si 0.913 3.087 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.392 0.608 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.371 0.629 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.687 -9.415 -1.113 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.296 6.296 3 C 0.356 3.644 4 O -0.414 6.414 5 C -0.290 4.290 6 C -0.020 4.020 7 C -0.334 4.334 8 C 0.154 3.846 9 N -0.359 5.359 10 C 0.102 3.898 11 C -0.018 4.018 12 O -0.361 6.361 13 C -0.156 4.156 14 C -0.162 4.162 15 C -0.157 4.157 16 C -0.180 4.180 17 C -0.259 4.259 18 C 0.184 3.816 19 C -0.447 4.447 20 H 0.117 0.883 21 C -0.147 4.147 22 N -0.406 5.406 23 Si 0.737 3.263 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.226 0.774 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.216 0.784 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.132 0.868 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.831 -8.826 -1.453 11.888 hybrid contribution -0.545 0.685 0.554 1.035 sum 7.286 -8.141 -0.899 10.963 Atomic orbital electron populations 1.22932 0.79001 1.01791 1.01634 1.86596 1.21229 1.35441 1.86339 1.21335 0.89658 0.80062 0.73395 1.90739 1.66898 1.35265 1.48479 1.19694 0.86523 0.95053 1.27714 1.20621 0.93085 0.95899 0.92433 1.20105 0.93872 0.95192 1.24260 1.17631 0.81895 0.93962 0.91160 1.44284 1.02978 1.09450 1.79166 1.20779 0.91002 0.86716 0.91344 1.22879 1.00641 0.89359 0.88948 1.86537 1.90996 1.39778 1.18825 1.22712 0.94346 1.02389 0.96115 1.22424 0.98986 0.99131 0.95657 1.22066 0.96456 0.98118 0.99012 1.22801 1.00694 0.98022 0.96522 1.20501 0.93298 0.94802 1.17318 1.18103 0.90642 0.89756 0.83082 1.20026 1.07013 0.91797 1.25908 0.88261 1.26057 0.94069 1.01099 0.93437 1.69767 1.21238 1.30384 1.19196 0.86169 0.80104 0.80475 0.79503 1.18108 1.19921 1.19891 0.92935 0.89640 0.92919 0.88128 0.87815 0.77439 0.91673 0.94440 0.78365 0.90826 0.90820 0.92028 0.91496 0.92303 0.91878 0.91734 0.88921 0.86832 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.57 101.05 1.07 1.74 16 2 O -0.38 -7.92 9.85 -40.87 -0.40 -8.32 16 3 C 0.50 12.52 7.86 34.29 0.27 12.79 16 4 O -0.52 -14.13 13.63 -19.31 -0.26 -14.39 16 5 C -0.29 -7.25 6.07 -102.50 -0.62 -7.87 16 6 C 0.00 -0.03 9.60 -39.25 -0.38 -0.40 16 7 C -0.31 -6.43 6.70 -39.31 -0.26 -6.69 16 8 C 0.26 5.50 6.12 -84.02 -0.51 4.99 16 9 N -0.73 -13.00 5.03 -44.59 -0.22 -13.22 16 10 C 0.19 2.75 0.53 -130.16 -0.07 2.68 16 11 C 0.06 0.88 5.49 37.16 0.20 1.08 16 12 O -0.56 -8.76 13.31 -35.23 -0.47 -9.23 16 13 C -0.12 -1.45 5.75 -24.55 -0.14 -1.59 16 14 C -0.12 -1.38 6.80 -24.88 -0.17 -1.55 16 15 C -0.12 -1.35 6.80 -25.62 -0.17 -1.53 16 16 C -0.14 -1.87 4.71 -25.62 -0.12 -1.99 16 17 C -0.23 -5.86 8.45 -38.65 -0.33 -6.19 16 18 C 0.19 5.09 5.61 -104.68 -0.59 4.50 16 19 C -0.42 -11.58 7.69 -37.80 -0.29 -11.87 16 20 H 0.10 2.85 6.19 -52.48 -0.32 2.52 16 21 C 0.07 1.88 5.24 -17.30 -0.09 1.79 16 22 N -0.78 -20.39 11.37 55.56 0.63 -19.75 16 23 Si 0.91 19.73 29.57 -169.99 -5.03 14.70 16 24 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 2.00 7.63 -52.48 -0.40 1.60 16 31 H 0.10 1.85 3.84 -52.49 -0.20 1.65 16 32 H 0.39 6.91 8.48 -40.82 -0.35 6.57 16 33 H 0.07 1.04 5.25 -51.93 -0.27 0.76 16 34 H 0.04 0.44 8.07 -51.93 -0.42 0.02 16 35 H 0.37 4.29 9.12 45.56 0.42 4.70 16 36 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.07 0.81 8.01 -51.93 -0.42 0.39 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 43 H 0.09 1.44 5.73 -51.93 -0.30 1.15 16 44 H 0.11 2.94 6.82 -52.49 -0.36 2.58 16 45 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -31.16 358.40 -8.10 -39.25 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -5.54 Total: 15.68 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.21 Total: -10.12 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.41 Total: -32.98 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.13 Total: -31.94 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.16 -8.10 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167807311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.922 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds