Wall clock time and date at job start Tue Mar 31 2020 12:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34837 * 116.99824 * 2 1 4 4 O 1.21565 * 120.00502 * 359.97438 * 3 2 1 5 5 C 1.47018 * 119.99767 * 180.02562 * 3 2 1 6 6 C 1.39574 * 120.48623 * 354.44178 * 5 3 2 7 7 C 1.37793 * 120.14206 * 180.02562 * 6 5 3 8 8 C 1.39413 * 121.19733 * 0.02562 * 7 6 5 9 9 N 1.39156 * 119.50270 * 180.02562 * 8 7 6 10 10 C 1.46500 * 119.99681 * 352.58241 * 9 8 7 11 11 C 1.53003 * 110.43464 * 300.91561 * 10 9 8 12 12 O 1.42896 * 109.46963 * 305.05659 * 11 10 9 13 13 C 1.54887 * 110.48555 * 178.37468 * 10 9 8 14 14 C 1.55243 * 102.58863 * 279.18596 * 13 10 9 15 15 C 1.54262 * 104.22863 * 322.08443 * 14 13 10 16 16 C 1.53871 * 106.60074 * 23.61212 * 15 14 13 17 17 C 1.38442 * 121.00113 * 359.97438 * 8 7 6 18 18 C 1.40500 * 119.76351 * 0.02562 * 17 8 7 19 19 C 1.40945 * 120.56473 * 179.97438 * 18 17 8 20 20 H 1.08003 * 120.00436 * 143.61609 * 19 18 17 21 21 C 1.40249 * 119.99790 * 323.60966 * 19 18 17 22 22 N 1.30641 * 120.00204 * 350.04971 * 21 19 18 23 23 Si 1.86800 * 120.00094 * 170.04665 * 21 19 18 24 24 H 1.48496 * 109.46886 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47207 * 120.00495 * 23 21 19 26 26 H 1.48502 * 109.46964 * 240.00141 * 23 21 19 27 27 H 1.09005 * 109.47316 * 60.00320 * 1 2 3 28 28 H 1.08996 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47331 * 300.00118 * 1 2 3 30 30 H 1.08008 * 119.92639 * 359.73889 * 6 5 3 31 31 H 1.08002 * 119.40334 * 179.97438 * 7 6 5 32 32 H 0.96995 * 119.99858 * 172.58690 * 9 8 7 33 33 H 1.08998 * 109.47209 * 65.05881 * 11 10 9 34 34 H 1.09001 * 109.47026 * 185.06315 * 11 10 9 35 35 H 0.96698 * 114.00242 * 179.97438 * 12 11 10 36 36 H 1.09004 * 110.75568 * 37.57753 * 13 10 9 37 37 H 1.08997 * 110.75936 * 160.94878 * 13 10 9 38 38 H 1.08992 * 110.47111 * 203.39392 * 14 13 10 39 39 H 1.08999 * 110.58129 * 80.82833 * 14 13 10 40 40 H 1.09000 * 110.03422 * 264.31983 * 15 14 13 41 41 H 1.09005 * 110.03155 * 142.89589 * 15 14 13 42 42 H 1.09001 * 110.03135 * 240.71254 * 16 15 14 43 43 H 1.09002 * 110.03623 * 119.28446 * 16 15 14 44 44 H 1.07994 * 120.12159 * 180.02562 * 17 8 7 45 45 H 0.96998 * 120.00726 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4021 2.2210 -0.0005 5 6 3.5323 1.2784 -0.0006 6 6 4.3021 0.1199 0.1154 7 6 5.6777 0.2003 0.1146 8 6 6.3293 1.4274 -0.0003 9 7 7.7202 1.4676 0.0023 10 6 8.4876 0.2526 0.2872 11 6 8.1297 -0.2931 1.6711 12 8 8.3196 0.7302 2.6502 13 6 10.0072 0.5366 0.1928 14 6 10.2689 0.4738 -1.3361 15 6 9.3636 -0.6740 -1.8289 16 6 8.2310 -0.8146 -0.7969 17 6 5.6135 2.6066 -0.1179 18 6 4.2089 2.5724 -0.1217 19 6 3.4634 3.7627 -0.2401 20 1 2.5415 3.7689 -0.8027 21 6 3.9186 4.9391 0.3729 22 7 4.9209 4.8941 1.2097 23 14 3.0920 6.5706 -0.0071 24 1 1.9909 6.3529 -0.9794 25 1 2.5409 7.1497 1.2443 26 1 4.0876 7.5063 -0.5890 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.8185 -0.8412 0.2106 31 1 6.2617 -0.7037 0.2054 32 1 8.1817 2.3001 -0.1844 33 1 7.0877 -0.6130 1.6772 34 1 8.7720 -1.1424 1.9040 35 1 8.1109 0.4542 3.5532 36 1 10.2406 1.5257 0.5869 37 1 10.5771 -0.2325 0.7142 38 1 11.3160 0.2457 -1.5346 39 1 9.9871 1.4131 -1.8120 40 1 9.9339 -1.6011 -1.8862 41 1 8.9492 -0.4291 -2.8069 42 1 8.2516 -1.8100 -0.3532 43 1 7.2670 -0.6379 -1.2739 44 1 6.1328 3.5493 -0.2065 45 1 5.2360 5.7077 1.6334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167807311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:56 Heat of formation + Delta-G solvation = -133.134132 kcal Electronic energy + Delta-G solvation = -27746.138795 eV Core-core repulsion = 23920.301373 eV Total energy + Delta-G solvation = -3825.837422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06688 -40.66336 -38.53563 -36.97428 -36.92379 -35.69948 -34.47184 -31.70727 -30.87630 -29.98537 -29.23386 -27.98355 -27.10968 -25.21781 -23.73139 -22.98935 -21.41471 -21.18852 -20.47541 -18.98495 -18.31522 -18.11600 -17.74194 -17.44100 -16.92523 -16.74017 -16.55173 -16.01037 -15.58536 -15.26373 -15.01885 -14.65493 -14.45989 -14.13754 -14.06801 -13.96361 -13.48500 -13.31428 -13.26641 -13.00449 -12.87458 -12.71121 -12.64275 -12.31700 -12.13658 -12.05061 -11.97512 -11.85403 -11.57822 -11.52111 -11.39064 -11.28760 -11.11446 -10.77222 -10.53961 -10.43923 -9.20857 -8.68426 -7.93885 -6.39750 0.54258 1.08318 1.33302 1.48666 1.51666 2.19217 2.21368 2.23617 2.70432 2.83645 3.32134 3.67868 3.74658 3.84271 4.09289 4.35860 4.39863 4.40610 4.45097 4.47206 4.54612 4.58536 4.59600 4.68639 4.73222 4.82178 4.88970 4.92150 4.96373 5.10123 5.13219 5.16100 5.17954 5.27064 5.33595 5.34732 5.49922 5.56964 5.67270 5.85306 5.94194 6.09876 6.14812 6.57106 6.87622 6.88722 6.93313 7.02254 7.16165 7.37786 8.31332 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.004769 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.952535 B = 5869.573297 C = 7403.647891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.502 3.498 4 O -0.557 6.557 5 C -0.320 4.320 6 C 0.001 3.999 7 C -0.297 4.297 8 C 0.270 3.730 9 N -0.721 5.721 10 C 0.175 3.825 11 C 0.059 3.941 12 O -0.583 6.583 13 C -0.111 4.111 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.141 4.141 17 C -0.262 4.262 18 C 0.163 3.837 19 C -0.459 4.459 20 H 0.075 0.925 21 C 0.036 3.964 22 N -0.811 5.811 23 Si 0.977 3.023 24 H -0.268 1.268 25 H -0.267 1.267 26 H -0.254 1.254 27 H 0.051 0.949 28 H 0.135 0.865 29 H 0.049 0.951 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.390 0.610 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.387 0.613 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.521 -11.971 -0.933 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.292 6.292 3 C 0.355 3.645 4 O -0.451 6.451 5 C -0.324 4.324 6 C -0.018 4.018 7 C -0.319 4.319 8 C 0.165 3.835 9 N -0.349 5.349 10 C 0.088 3.912 11 C -0.020 4.020 12 O -0.389 6.389 13 C -0.149 4.149 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.179 4.179 17 C -0.287 4.287 18 C 0.159 3.841 19 C -0.488 4.488 20 H 0.093 0.907 21 C -0.180 4.180 22 N -0.437 5.437 23 Si 0.798 3.202 24 H -0.193 1.193 25 H -0.191 1.191 26 H -0.179 1.179 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.157 0.843 32 H 0.224 0.776 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.235 0.765 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.711 -11.431 -1.261 15.052 hybrid contribution -1.016 1.230 0.522 1.679 sum 8.695 -10.200 -0.739 13.424 Atomic orbital electron populations 1.23348 0.76193 1.04965 1.01522 1.86540 1.23911 1.33124 1.85671 1.21369 0.89774 0.80603 0.72749 1.90709 1.67623 1.36643 1.50154 1.19982 0.87513 0.95653 1.29256 1.20920 0.93605 0.95957 0.91300 1.20483 0.93654 0.95963 1.21791 1.17709 0.83621 0.93299 0.88841 1.44485 1.01754 1.11036 1.77576 1.21226 0.92149 0.85587 0.92204 1.22944 1.00479 0.90123 0.88459 1.86496 1.91117 1.41037 1.20270 1.22701 0.92568 1.02482 0.97121 1.22420 1.00373 0.98509 0.94633 1.22063 0.95998 0.99320 0.97945 1.22769 1.00131 0.98654 0.96371 1.20364 0.92981 0.95360 1.20011 1.18457 0.91713 0.90541 0.83384 1.19984 1.07002 0.93643 1.28149 0.90682 1.26739 0.94677 1.03759 0.92840 1.69799 1.22452 1.31467 1.19990 0.85240 0.79075 0.76673 0.79181 1.19261 1.19146 1.17855 0.93049 0.84724 0.93188 0.85453 0.84286 0.77611 0.93328 0.90721 0.76490 0.92067 0.88497 0.89700 0.92964 0.89756 0.92630 0.89208 0.91484 0.88803 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.57 113.37 1.20 2.24 16 2 O -0.37 -15.56 9.85 -57.49 -0.57 -16.12 16 3 C 0.50 25.74 7.86 70.12 0.55 26.29 16 4 O -0.56 -31.67 13.63 19.62 0.27 -31.41 16 5 C -0.32 -16.74 6.07 -18.49 -0.11 -16.86 16 6 C 0.00 0.05 9.60 22.49 0.22 0.27 16 7 C -0.30 -11.87 6.70 22.45 0.15 -11.72 16 8 C 0.27 11.71 6.12 38.31 0.23 11.95 16 9 N -0.72 -25.27 5.03 -294.99 -1.48 -26.76 16 10 C 0.18 4.62 0.53 4.68 0.00 4.62 16 11 C 0.06 1.50 5.49 71.98 0.40 1.89 16 12 O -0.58 -17.12 13.31 -148.98 -1.98 -19.10 16 13 C -0.11 -2.37 5.75 32.01 0.18 -2.19 16 14 C -0.12 -2.34 6.80 31.79 0.22 -2.12 16 15 C -0.12 -2.22 6.80 31.32 0.21 -2.01 16 16 C -0.14 -3.24 4.71 31.32 0.15 -3.09 16 17 C -0.26 -13.72 8.45 22.87 0.19 -13.53 16 18 C 0.16 9.29 5.61 -19.90 -0.11 9.18 16 19 C -0.46 -27.07 7.69 23.42 0.18 -26.89 16 20 H 0.08 4.66 6.19 -2.91 -0.02 4.64 16 21 C 0.04 1.94 5.24 85.36 0.45 2.39 16 22 N -0.81 -44.33 11.37 21.88 0.25 -44.08 16 23 Si 0.98 42.32 29.57 68.60 2.03 44.35 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 27 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.13 4.79 7.63 -2.91 -0.02 4.77 16 31 H 0.14 4.55 3.84 -2.91 -0.01 4.54 16 32 H 0.39 13.88 8.48 -92.71 -0.79 13.10 16 33 H 0.05 1.40 5.25 -2.39 -0.01 1.38 16 34 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 35 H 0.39 8.20 9.12 -74.06 -0.68 7.52 16 36 H 0.06 1.48 8.08 -2.39 -0.02 1.46 16 37 H 0.10 1.67 8.01 -2.39 -0.02 1.65 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.09 1.64 7.84 -2.39 -0.02 1.62 16 43 H 0.07 1.91 5.73 -2.39 -0.01 1.90 16 44 H 0.09 5.17 6.82 -2.91 -0.02 5.15 16 45 H 0.29 14.20 8.29 -92.71 -0.77 13.44 16 Total: -1.00 -72.61 358.40 2.20 -70.42 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -0.42 Total: 42.28 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.10 Total: -19.58 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -1.24 Total: -70.84 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: -2.28 Total: -66.63 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -72.61 2.20 -70.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167807311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.718 kcal (2) G-P(sol) polarization free energy of solvation -72.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds