Wall clock time and date at job start Tue Mar 31 2020 12:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00144 * 2 1 4 4 O 1.20820 * 119.99859 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99818 * 179.97438 * 3 2 1 6 6 O 1.42899 * 109.47059 * 179.97438 * 5 3 2 7 7 C 1.35999 * 116.99994 * 179.97438 * 6 5 3 8 8 C 1.38704 * 119.97778 * 180.02562 * 7 6 5 9 9 C 1.38112 * 120.01516 * 179.97438 * 8 7 6 10 10 C 1.38865 * 119.98245 * 0.02562 * 9 8 7 11 11 N 1.39935 * 120.01571 * 180.02562 * 10 9 8 12 12 C 1.46499 * 119.99573 * 179.72431 * 11 10 9 13 13 H 1.09000 * 109.41557 * 325.13295 * 12 11 10 14 14 C 1.52956 * 109.41605 * 84.92353 * 12 11 10 15 15 C 1.53232 * 109.40779 * 183.70553 * 14 12 11 16 16 C 1.51265 * 108.53404 * 305.36996 * 15 14 12 17 17 C 1.37880 * 120.85064 * 231.32500 * 16 15 14 18 18 N 1.31516 * 119.99679 * 180.02562 * 17 16 15 19 19 Si 1.86795 * 119.99955 * 0.02562 * 17 16 15 20 20 H 1.48509 * 109.47099 * 59.99912 * 19 17 16 21 21 H 1.48497 * 109.47135 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47179 * 300.00212 * 19 17 16 23 23 C 1.51276 * 118.30026 * 51.34726 * 16 15 14 24 24 C 1.52963 * 109.41445 * 205.27795 * 12 11 10 25 25 C 1.38860 * 119.96048 * 0.27368 * 10 9 8 26 26 C 1.38110 * 119.97801 * 359.41067 * 25 10 9 27 27 H 1.09000 * 109.46944 * 59.99872 * 1 2 3 28 28 H 1.09001 * 109.46845 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46609 * 300.00095 * 1 2 3 30 30 H 1.09003 * 109.46757 * 60.00679 * 5 3 2 31 31 H 1.09001 * 109.47195 * 300.00359 * 5 3 2 32 32 H 1.07995 * 119.99489 * 0.02562 * 8 7 6 33 33 H 1.08001 * 120.00743 * 180.02562 * 9 8 7 34 34 H 0.97001 * 120.00577 * 0.02562 * 11 10 9 35 35 H 1.08998 * 109.47996 * 303.68485 * 14 12 11 36 36 H 1.09003 * 109.48300 * 63.71878 * 14 12 11 37 37 H 1.08994 * 109.62512 * 185.65672 * 15 14 12 38 38 H 1.08996 * 109.62425 * 65.08246 * 15 14 12 39 39 H 0.97009 * 119.99259 * 180.02562 * 18 17 16 40 40 H 1.09004 * 109.62353 * 188.93547 * 23 16 15 41 41 H 1.09004 * 109.78032 * 68.45968 * 23 16 15 42 42 H 1.09000 * 109.48003 * 296.27228 * 24 12 11 43 43 H 1.08999 * 109.48365 * 56.31226 * 24 12 11 44 44 H 1.07999 * 120.01030 * 179.70046 * 25 10 9 45 45 H 1.08002 * 119.98852 * 180.32119 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 8 3.9717 2.6451 -0.0001 7 6 5.3088 2.8935 0.0008 8 6 5.7707 4.2014 0.0007 9 6 7.1284 4.4546 0.0022 10 6 8.0311 3.3994 0.0033 11 7 9.4069 3.6551 0.0053 12 6 10.3588 2.5416 0.0125 13 1 9.9517 1.7207 0.6030 14 6 10.5955 2.0657 -1.4217 15 6 11.5185 0.8427 -1.4066 16 6 12.7799 1.2016 -0.6528 17 6 14.0226 0.9724 -1.2044 18 7 15.1084 1.2905 -0.5340 19 14 14.1640 0.2100 -2.9039 20 1 13.4866 1.0832 -3.8960 21 1 15.5973 0.0697 -3.2658 22 1 13.5203 -1.1281 -2.9012 23 6 12.6431 1.8180 0.7219 24 6 11.6793 3.0055 0.6296 25 6 7.5677 2.0904 -0.0029 26 6 6.2097 1.8390 0.0022 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 3.9564 0.7805 -0.8893 31 1 3.9558 0.7808 0.8908 32 1 5.0685 5.0220 0.0003 33 1 7.4879 5.4730 0.0026 34 1 9.7303 4.5696 0.0064 35 1 9.6426 1.7964 -1.8773 36 1 11.0609 2.8654 -1.9980 37 1 11.7705 0.5616 -2.4291 38 1 11.0180 0.0125 -0.9084 39 1 15.9827 1.1295 -0.9222 40 1 13.6178 2.1634 1.0668 41 1 12.2484 1.0794 1.4197 42 1 12.1192 3.7829 0.0048 43 1 11.4946 3.4023 1.6278 44 1 8.2691 1.2691 -0.0070 45 1 5.8492 0.8210 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167846096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:43 Heat of formation + Delta-G solvation = -102.391833 kcal Electronic energy + Delta-G solvation = -25938.369715 eV Core-core repulsion = 22113.865379 eV Total energy + Delta-G solvation = -3824.504336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94091 -39.96037 -38.40627 -36.97067 -36.51765 -33.91816 -31.76496 -31.04700 -30.10968 -29.76796 -28.38071 -27.25943 -26.25800 -23.20369 -22.42719 -21.61479 -21.14666 -20.95401 -19.42405 -18.59331 -17.55744 -17.35440 -17.23408 -16.67946 -16.05141 -15.67781 -15.57622 -14.82050 -14.51559 -14.26944 -13.73996 -13.71949 -13.42726 -13.29006 -13.12302 -12.93499 -12.68706 -12.47700 -12.32332 -12.25660 -12.11330 -11.70588 -11.39338 -11.23783 -11.03988 -10.93520 -10.81116 -10.66319 -10.62741 -10.18457 -10.05224 -9.82868 -9.31625 -9.02054 -8.87137 -8.67408 -8.52644 -6.85439 -6.15822 -4.07090 1.46104 1.74775 1.79970 1.84713 3.25017 3.32328 3.33245 3.43563 3.86577 3.98536 4.29340 4.33817 4.65481 4.66720 4.69404 4.78697 4.93119 5.00881 5.10325 5.11988 5.41745 5.47931 5.60937 5.68970 5.82252 5.88916 6.03401 6.13279 6.16653 6.41344 6.42883 6.51837 6.59173 6.66067 6.70816 6.81689 6.84793 6.96596 7.02471 7.28462 7.33642 7.39733 7.56881 7.64333 7.72401 7.81324 8.14270 8.31753 8.90370 9.48808 10.93719 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.002316 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.349446 B =12086.427699 C =12904.885787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.464 3.536 4 O -0.485 6.485 5 C 0.072 3.928 6 O -0.302 6.302 7 C 0.048 3.952 8 C -0.093 4.093 9 C -0.169 4.169 10 C 0.204 3.796 11 N -0.741 5.741 12 C 0.160 3.840 13 H 0.068 0.932 14 C -0.119 4.119 15 C -0.009 4.009 16 C -0.491 4.491 17 C 0.076 3.924 18 N -0.889 5.889 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.292 1.292 22 H -0.274 1.274 23 C 0.013 3.987 24 C -0.114 4.114 25 C -0.162 4.162 26 C -0.154 4.154 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.394 0.606 35 H 0.035 0.965 36 H 0.053 0.947 37 H 0.025 0.975 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.060 0.940 41 H 0.005 0.995 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.130 0.870 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.402 -0.174 1.380 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.370 6.370 5 C -0.005 4.005 6 O -0.217 6.217 7 C 0.003 3.997 8 C -0.112 4.112 9 C -0.192 4.192 10 C 0.099 3.901 11 N -0.368 5.368 12 C 0.057 3.943 13 H 0.086 0.914 14 C -0.158 4.158 15 C -0.048 4.048 16 C -0.510 4.510 17 C -0.127 4.127 18 N -0.526 5.526 19 Si 0.720 3.280 20 H -0.200 1.200 21 H -0.219 1.219 22 H -0.200 1.200 23 C -0.025 4.025 24 C -0.152 4.152 25 C -0.185 4.185 26 C -0.173 4.173 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.228 0.772 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.148 0.852 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.448 0.097 1.383 22.491 hybrid contribution 0.201 -0.201 -1.021 1.060 sum -22.247 -0.105 0.363 22.250 Atomic orbital electron populations 1.23326 0.75437 1.04002 1.02848 1.86455 1.23988 1.32544 1.84417 1.23136 0.91220 0.81813 0.73359 1.90713 1.66735 1.36210 1.43381 1.21749 0.88268 0.85170 1.05309 1.86022 1.21536 1.23382 1.90721 1.18575 0.80674 0.94216 1.06199 1.20042 0.94882 0.93813 1.02446 1.20387 0.91602 0.98025 1.09218 1.17899 0.84745 0.93237 0.94212 1.45261 1.01679 1.09089 1.80786 1.20967 0.88642 0.87808 0.96914 0.91431 1.22019 0.98081 1.00170 0.95561 1.19608 0.95453 0.93315 0.96383 1.20008 0.89379 1.40230 1.01357 1.24847 0.95367 0.94982 0.97467 1.69822 0.97814 1.46995 1.37992 0.86652 0.76506 0.80159 0.84728 1.20014 1.21856 1.19996 1.19335 0.95774 0.91724 0.95638 1.21901 0.94803 1.01079 0.97444 1.20590 0.94933 0.95672 1.07270 1.20959 0.93429 0.97745 1.05155 0.91652 0.87676 0.91644 0.87819 0.87813 0.85582 0.85695 0.77209 0.94605 0.92854 0.95638 0.96369 0.92481 0.92163 0.97663 0.92806 0.94615 0.85182 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.05 10.57 -39.26 -0.41 -3.46 16 3 C 0.46 4.86 8.03 36.01 0.29 5.15 16 4 O -0.49 -6.73 16.25 -25.47 -0.41 -7.14 16 5 C 0.07 0.66 5.33 36.01 0.19 0.85 16 6 O -0.30 -3.88 9.67 -39.69 -0.38 -4.26 16 7 C 0.05 0.63 6.69 -39.24 -0.26 0.37 16 8 C -0.09 -1.19 9.98 -39.46 -0.39 -1.59 16 9 C -0.17 -2.19 9.89 -39.40 -0.39 -2.58 16 10 C 0.20 2.97 6.64 -83.70 -0.56 2.41 16 11 N -0.74 -11.23 5.25 -52.16 -0.27 -11.51 16 12 C 0.16 2.86 2.05 -67.97 -0.14 2.72 16 13 H 0.07 1.23 6.50 -51.93 -0.34 0.89 16 14 C -0.12 -2.31 5.42 -26.63 -0.14 -2.46 16 15 C -0.01 -0.21 5.59 -27.49 -0.15 -0.36 16 16 C -0.49 -12.40 5.51 -98.92 -0.55 -12.95 16 17 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 18 N -0.89 -24.93 12.73 55.43 0.71 -24.22 16 19 Si 0.89 20.85 26.80 -169.99 -4.56 16.30 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.01 0.31 5.97 -27.48 -0.16 0.15 16 24 C -0.11 -2.24 5.40 -26.63 -0.14 -2.38 16 25 C -0.16 -2.31 8.80 -39.40 -0.35 -2.65 16 26 C -0.15 -1.91 9.03 -39.46 -0.36 -2.27 16 27 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 30 H 0.10 0.75 7.66 -51.93 -0.40 0.35 16 31 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.39 5.40 8.61 -40.82 -0.35 5.05 16 35 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.57 5.17 -51.93 -0.27 0.30 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.06 1.57 7.07 -51.93 -0.37 1.21 16 41 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.13 1.91 6.12 -52.49 -0.32 1.59 16 45 H 0.12 1.19 6.29 -52.49 -0.33 0.86 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -30.35 365.27 -8.51 -38.86 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.53 Total: 2.30 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.14 Total: -12.37 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.43 Total: -35.73 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -1.21 Total: -14.86 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.56 Total: 16.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.35 -8.51 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.530 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds