Wall clock time and date at job start Tue Mar 31 2020 12:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00144 * 2 1 4 4 O 1.20820 * 119.99859 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99818 * 179.97438 * 3 2 1 6 6 O 1.42899 * 109.47059 * 179.97438 * 5 3 2 7 7 C 1.35999 * 116.99994 * 179.97438 * 6 5 3 8 8 C 1.38704 * 119.97778 * 180.02562 * 7 6 5 9 9 C 1.38112 * 120.01516 * 179.97438 * 8 7 6 10 10 C 1.38865 * 119.98245 * 0.02562 * 9 8 7 11 11 N 1.39935 * 120.01571 * 180.02562 * 10 9 8 12 12 C 1.46499 * 119.99573 * 179.72431 * 11 10 9 13 13 H 1.09000 * 109.41557 * 325.13295 * 12 11 10 14 14 C 1.52956 * 109.41605 * 84.92353 * 12 11 10 15 15 C 1.53232 * 109.40779 * 183.70553 * 14 12 11 16 16 C 1.51265 * 108.53404 * 305.36996 * 15 14 12 17 17 C 1.37880 * 120.85064 * 231.32500 * 16 15 14 18 18 N 1.31516 * 119.99679 * 180.02562 * 17 16 15 19 19 Si 1.86795 * 119.99955 * 0.02562 * 17 16 15 20 20 H 1.48509 * 109.47099 * 59.99912 * 19 17 16 21 21 H 1.48497 * 109.47135 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47179 * 300.00212 * 19 17 16 23 23 C 1.51276 * 118.30026 * 51.34726 * 16 15 14 24 24 C 1.52963 * 109.41445 * 205.27795 * 12 11 10 25 25 C 1.38860 * 119.96048 * 0.27368 * 10 9 8 26 26 C 1.38110 * 119.97801 * 359.41067 * 25 10 9 27 27 H 1.09000 * 109.46944 * 59.99872 * 1 2 3 28 28 H 1.09001 * 109.46845 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46609 * 300.00095 * 1 2 3 30 30 H 1.09003 * 109.46757 * 60.00679 * 5 3 2 31 31 H 1.09001 * 109.47195 * 300.00359 * 5 3 2 32 32 H 1.07995 * 119.99489 * 0.02562 * 8 7 6 33 33 H 1.08001 * 120.00743 * 180.02562 * 9 8 7 34 34 H 0.97001 * 120.00577 * 0.02562 * 11 10 9 35 35 H 1.08998 * 109.47996 * 303.68485 * 14 12 11 36 36 H 1.09003 * 109.48300 * 63.71878 * 14 12 11 37 37 H 1.08994 * 109.62512 * 185.65672 * 15 14 12 38 38 H 1.08996 * 109.62425 * 65.08246 * 15 14 12 39 39 H 0.97009 * 119.99259 * 180.02562 * 18 17 16 40 40 H 1.09004 * 109.62353 * 188.93547 * 23 16 15 41 41 H 1.09004 * 109.78032 * 68.45968 * 23 16 15 42 42 H 1.09000 * 109.48003 * 296.27228 * 24 12 11 43 43 H 1.08999 * 109.48365 * 56.31226 * 24 12 11 44 44 H 1.07999 * 120.01030 * 179.70046 * 25 10 9 45 45 H 1.08002 * 119.98852 * 180.32119 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 8 3.9717 2.6451 -0.0001 7 6 5.3088 2.8935 0.0008 8 6 5.7707 4.2014 0.0007 9 6 7.1284 4.4546 0.0022 10 6 8.0311 3.3994 0.0033 11 7 9.4069 3.6551 0.0053 12 6 10.3588 2.5416 0.0125 13 1 9.9517 1.7207 0.6030 14 6 10.5955 2.0657 -1.4217 15 6 11.5185 0.8427 -1.4066 16 6 12.7799 1.2016 -0.6528 17 6 14.0226 0.9724 -1.2044 18 7 15.1084 1.2905 -0.5340 19 14 14.1640 0.2100 -2.9039 20 1 13.4866 1.0832 -3.8960 21 1 15.5973 0.0697 -3.2658 22 1 13.5203 -1.1281 -2.9012 23 6 12.6431 1.8180 0.7219 24 6 11.6793 3.0055 0.6296 25 6 7.5677 2.0904 -0.0029 26 6 6.2097 1.8390 0.0022 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 3.9564 0.7805 -0.8893 31 1 3.9558 0.7808 0.8908 32 1 5.0685 5.0220 0.0003 33 1 7.4879 5.4730 0.0026 34 1 9.7303 4.5696 0.0064 35 1 9.6426 1.7964 -1.8773 36 1 11.0609 2.8654 -1.9980 37 1 11.7705 0.5616 -2.4291 38 1 11.0180 0.0125 -0.9084 39 1 15.9827 1.1295 -0.9222 40 1 13.6178 2.1634 1.0668 41 1 12.2484 1.0794 1.4197 42 1 12.1192 3.7829 0.0048 43 1 11.4946 3.4023 1.6278 44 1 8.2691 1.2691 -0.0070 45 1 5.8492 0.8210 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167846096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:42 Heat of formation + Delta-G solvation = -119.093897 kcal Electronic energy + Delta-G solvation = -25939.093971 eV Core-core repulsion = 22113.865379 eV Total energy + Delta-G solvation = -3825.228592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73736 -40.91235 -39.59085 -38.13631 -37.47314 -35.39489 -33.44028 -32.01751 -31.48290 -30.94641 -29.63768 -28.09782 -27.44660 -24.37134 -23.81036 -23.12161 -22.37265 -21.94514 -20.96677 -19.46856 -18.45066 -18.38184 -17.96777 -17.85352 -17.44343 -16.77003 -16.43422 -16.41283 -15.84916 -15.34317 -15.03337 -14.70330 -14.53717 -14.41723 -14.30427 -14.22977 -13.99972 -13.82687 -13.67471 -13.33504 -13.13257 -12.95067 -12.76627 -12.70708 -12.44468 -12.23443 -12.01669 -11.88354 -11.87027 -11.65911 -11.52771 -11.40990 -10.88030 -10.67443 -10.53763 -10.22949 -9.86534 -8.16523 -7.95173 -6.09698 0.48176 0.75712 0.99686 1.15466 1.39769 1.41164 1.48565 2.40948 2.58580 2.71971 2.98003 3.13633 3.61158 3.95717 4.00596 4.06434 4.10090 4.13401 4.25873 4.28697 4.32084 4.45688 4.52810 4.58226 4.66663 4.70676 4.75029 4.96236 5.00915 5.05385 5.10784 5.17085 5.21172 5.25787 5.27242 5.34250 5.49619 5.52182 5.61162 5.65430 5.75662 5.78782 5.86478 6.35593 6.37143 6.57376 6.62835 6.96702 7.03514 7.48113 8.94328 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.002316 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.349446 B =12086.427699 C =12904.885787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.467 3.533 4 O -0.528 6.528 5 C 0.065 3.935 6 O -0.322 6.322 7 C 0.049 3.951 8 C -0.103 4.103 9 C -0.164 4.164 10 C 0.185 3.815 11 N -0.740 5.740 12 C 0.176 3.824 13 H 0.068 0.932 14 C -0.111 4.111 15 C -0.013 4.013 16 C -0.497 4.497 17 C 0.021 3.979 18 N -0.930 5.930 19 Si 0.941 3.059 20 H -0.268 1.268 21 H -0.296 1.296 22 H -0.266 1.266 23 C 0.009 3.991 24 C -0.103 4.103 25 C -0.175 4.175 26 C -0.151 4.151 27 H 0.063 0.937 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.401 0.599 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.024 0.976 38 H 0.027 0.973 39 H 0.262 0.738 40 H 0.027 0.973 41 H 0.003 0.997 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.125 0.875 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.824 -0.831 0.843 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.311 3.689 4 O -0.416 6.416 5 C -0.011 4.011 6 O -0.237 6.237 7 C 0.004 3.996 8 C -0.123 4.123 9 C -0.186 4.186 10 C 0.082 3.918 11 N -0.369 5.369 12 C 0.071 3.929 13 H 0.086 0.914 14 C -0.150 4.150 15 C -0.051 4.051 16 C -0.516 4.516 17 C -0.177 4.177 18 N -0.570 5.570 19 Si 0.768 3.232 20 H -0.193 1.193 21 H -0.223 1.223 22 H -0.191 1.191 23 C -0.029 4.029 24 C -0.141 4.141 25 C -0.198 4.198 26 C -0.170 4.170 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.236 0.764 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.022 0.978 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.142 0.858 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.918 -0.578 0.842 24.939 hybrid contribution 0.778 -0.047 -0.784 1.105 sum -24.140 -0.625 0.058 24.148 Atomic orbital electron populations 1.23630 0.73960 1.06098 1.02711 1.86457 1.25449 1.31403 1.83772 1.23437 0.91736 0.81685 0.72085 1.90699 1.67703 1.37588 1.45631 1.22080 0.87511 0.83871 1.07647 1.85994 1.21310 1.25712 1.90683 1.18722 0.80988 0.94490 1.05417 1.20290 0.95131 0.94469 1.02364 1.20553 0.91390 0.98584 1.08118 1.18054 0.84330 0.93939 0.95500 1.44930 1.01655 1.08532 1.81798 1.20562 0.88129 0.88608 0.95591 0.91438 1.21893 0.98009 0.98409 0.96688 1.19647 0.94730 0.94905 0.95839 1.20638 0.90445 1.38599 1.01931 1.25588 0.95445 0.96079 1.00614 1.69962 0.98135 1.49381 1.39567 0.85835 0.76194 0.79844 0.81343 1.19308 1.22332 1.19086 1.19299 0.95278 0.93241 0.95105 1.21681 0.94916 0.98934 0.98581 1.20689 0.95696 0.95441 1.07944 1.21187 0.92575 0.99092 1.04122 0.91861 0.84463 0.91820 0.85366 0.85272 0.84554 0.83985 0.76399 0.92784 0.93996 0.95786 0.95482 0.92900 0.95468 0.97819 0.93712 0.92884 0.85755 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.29 10.57 -51.42 -0.54 -5.84 16 3 C 0.47 9.01 8.03 71.24 0.57 9.58 16 4 O -0.53 -14.28 16.25 28.41 0.46 -13.82 16 5 C 0.06 1.01 5.33 71.24 0.38 1.39 16 6 O -0.32 -7.55 9.67 -74.46 -0.72 -8.27 16 7 C 0.05 1.15 6.69 22.49 0.15 1.30 16 8 C -0.10 -2.43 9.98 22.35 0.22 -2.21 16 9 C -0.16 -3.85 9.89 22.39 0.22 -3.63 16 10 C 0.19 4.95 6.64 38.15 0.25 5.20 16 11 N -0.74 -20.90 5.25 -318.94 -1.68 -22.58 16 12 C 0.18 5.98 2.05 44.96 0.09 6.07 16 13 H 0.07 2.33 6.50 -2.39 -0.02 2.31 16 14 C -0.11 -4.09 5.42 30.66 0.17 -3.93 16 15 C -0.01 -0.56 5.59 30.11 0.17 -0.40 16 16 C -0.50 -25.15 5.51 -16.17 -0.09 -25.24 16 17 C 0.02 1.13 5.46 84.66 0.46 1.59 16 18 N -0.93 -53.77 12.73 21.45 0.27 -53.50 16 19 Si 0.94 42.86 26.80 68.60 1.84 44.70 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.01 0.42 5.97 30.11 0.18 0.60 16 24 C -0.10 -3.97 5.40 30.66 0.17 -3.81 16 25 C -0.17 -4.54 8.80 22.39 0.20 -4.34 16 26 C -0.15 -3.29 9.03 22.35 0.20 -3.09 16 27 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 28 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 30 H 0.13 1.39 7.66 -2.39 -0.02 1.37 16 31 H 0.13 1.37 7.66 -2.39 -0.02 1.35 16 32 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.40 10.18 8.61 -92.71 -0.80 9.38 16 35 H 0.05 1.81 7.69 -2.39 -0.02 1.79 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.02 1.02 5.17 -2.39 -0.01 1.01 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 40 H 0.03 1.46 7.07 -2.38 -0.02 1.44 16 41 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.12 3.35 6.12 -2.91 -0.02 3.33 16 45 H 0.15 2.32 6.29 -2.91 -0.02 2.30 16 Total: -1.00 -66.22 365.27 4.39 -61.83 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.21 Total: 16.88 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 4.54 Total: -19.41 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.40 Total: -76.07 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.80 Total: -27.93 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.84 Total: 44.70 kcal Total: -66.22 4.39 -61.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.264 kcal (2) G-P(sol) polarization free energy of solvation -66.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds