Wall clock time and date at job start Tue Mar 31 2020 12:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00071 * 2 1 4 4 O 1.42903 * 109.46985 * 74.99542 * 3 2 1 5 5 C 1.35709 * 117.00077 * 75.00526 * 4 3 2 6 6 C 1.39001 * 119.90898 * 359.72539 * 5 4 3 7 7 C 1.37704 * 120.08749 * 179.72696 * 6 5 4 8 8 C 1.39744 * 119.90754 * 0.52512 * 7 6 5 9 9 C 1.47600 * 120.08388 * 179.77293 * 8 7 6 10 10 O 1.21587 * 119.99599 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00146 * 359.97042 * 9 8 7 12 12 C 1.46499 * 119.99700 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.41223 * 35.14728 * 12 11 9 14 14 C 1.52966 * 109.41071 * 155.00346 * 12 11 9 15 15 C 1.53228 * 109.40058 * 183.70688 * 14 12 11 16 16 C 1.51272 * 108.53966 * 305.36809 * 15 14 12 17 17 C 1.37876 * 120.85224 * 231.33099 * 16 15 14 18 18 N 1.31511 * 120.00044 * 0.02562 * 17 16 15 19 19 Si 1.86803 * 119.99830 * 179.97438 * 17 16 15 20 20 H 1.48500 * 109.46486 * 90.00105 * 19 17 16 21 21 H 1.48493 * 109.47104 * 209.99722 * 19 17 16 22 22 H 1.48496 * 109.47055 * 330.00149 * 19 17 16 23 23 C 1.51270 * 118.29407 * 51.34856 * 16 15 14 24 24 C 1.52957 * 109.41422 * 275.35710 * 12 11 9 25 25 C 1.39730 * 119.82425 * 359.74491 * 8 7 6 26 26 C 1.37697 * 119.91308 * 0.02562 * 25 8 7 27 27 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46957 * 300.00055 * 1 2 3 29 29 H 1.08996 * 109.46857 * 60.00618 * 1 2 3 30 30 H 1.09002 * 109.47259 * 194.99860 * 3 2 1 31 31 H 1.09001 * 109.47074 * 314.99881 * 3 2 1 32 32 H 1.08002 * 119.95753 * 359.97438 * 6 5 4 33 33 H 1.08000 * 120.04758 * 180.24247 * 7 6 5 34 34 H 0.97003 * 120.00069 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.48229 * 303.68303 * 14 12 11 36 36 H 1.08999 * 109.48286 * 63.72651 * 14 12 11 37 37 H 1.08995 * 109.62905 * 65.08917 * 15 14 12 38 38 H 1.09000 * 109.62084 * 185.65718 * 15 14 12 39 39 H 0.97002 * 120.00226 * 180.02562 * 18 17 16 40 40 H 1.08998 * 109.62533 * 68.37243 * 23 16 15 41 41 H 1.08998 * 109.62309 * 188.74508 * 23 16 15 42 42 H 1.09004 * 109.48136 * 296.27558 * 24 12 11 43 43 H 1.08994 * 109.48507 * 56.31812 * 24 12 11 44 44 H 1.08001 * 120.04230 * 179.97438 * 25 8 7 45 45 H 1.08001 * 119.95835 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.8853 1.8824 1.3014 5 6 2.7175 1.4139 2.2656 6 6 3.6332 0.4125 1.9641 7 6 4.4832 -0.0617 2.9383 8 6 4.4166 0.4574 4.2340 9 6 5.3224 -0.0516 5.2824 10 8 5.2635 0.4015 6.4091 11 7 6.2147 -1.0187 4.9907 12 6 7.1133 -1.5242 6.0315 13 1 6.5912 -1.5323 6.9883 14 6 7.5503 -2.9470 5.6787 15 6 8.4151 -3.5096 6.8116 16 6 9.5579 -2.5515 7.0655 17 6 10.8614 -2.9992 7.1006 18 7 11.1242 -4.2739 6.9114 19 14 12.2544 -1.7951 7.4153 20 1 12.5085 -1.7030 8.8755 21 1 13.4827 -2.2684 6.7281 22 1 11.8793 -0.4567 6.8928 23 6 9.2337 -1.0897 7.2804 24 6 8.3391 -0.6148 6.1306 25 6 3.4908 1.4600 4.5343 26 6 2.6476 1.9321 3.5534 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 3.0649 1.2336 -0.2660 31 1 1.4942 1.9329 -0.7267 32 1 3.6809 0.0087 0.9636 33 1 5.1971 -0.8370 2.7023 34 1 6.2619 -1.3800 4.0917 35 1 6.6696 -3.5757 5.5471 36 1 8.1274 -2.9314 4.7542 37 1 7.8142 -3.6105 7.7153 38 1 8.8109 -4.4828 6.5213 39 1 12.0413 -4.5890 6.9364 40 1 8.7086 -0.9665 8.2276 41 1 10.1557 -0.5085 7.2948 42 1 8.8976 -0.6543 5.1953 43 1 8.0176 0.4095 6.3192 44 1 3.4361 1.8634 5.5346 45 1 1.9315 2.7067 3.7848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191281397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:19 Heat of formation + Delta-G solvation = -109.253864 kcal Electronic energy + Delta-G solvation = -26263.579022 eV Core-core repulsion = 22438.777126 eV Total energy + Delta-G solvation = -3824.801896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.74302 -39.64382 -38.12686 -36.90892 -36.34758 -33.76304 -31.87081 -31.12274 -30.30912 -29.63145 -28.21128 -27.16623 -25.78170 -23.59442 -22.81944 -21.86883 -21.44603 -20.06419 -19.54038 -18.83709 -17.60534 -17.32907 -17.13525 -15.99114 -15.96991 -15.52792 -14.87664 -14.81098 -14.64806 -14.40973 -14.14785 -13.95187 -13.69249 -13.57518 -13.14536 -12.73890 -12.64673 -12.44702 -12.27047 -12.08623 -11.83646 -11.65965 -11.52734 -11.15895 -10.98151 -10.81070 -10.70340 -10.62998 -10.15193 -9.98894 -9.65397 -9.49636 -9.26414 -8.98131 -8.84185 -8.53616 -8.46802 -8.23273 -6.09206 -3.99773 0.81689 1.15107 2.76481 2.95135 3.23249 3.29154 3.37168 3.38830 3.56071 3.87285 4.39864 4.40033 4.49976 4.56908 4.76244 4.83639 4.90212 4.94413 5.07345 5.16423 5.20604 5.24373 5.42936 5.70727 5.78573 5.89288 5.92651 6.06358 6.22583 6.25530 6.29489 6.45596 6.50430 6.51826 6.74100 6.80236 6.92049 6.98700 7.01152 7.13893 7.27538 7.46091 7.66530 7.72710 7.78503 7.96173 8.39520 8.58216 8.97365 9.55824 11.00263 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025554 B = 0.002405 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.469381 B =11640.156320 C =12021.751599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.393 6.393 3 C 0.209 3.791 4 O -0.330 6.330 5 C 0.146 3.854 6 C -0.203 4.203 7 C -0.048 4.048 8 C -0.163 4.163 9 C 0.554 3.446 10 O -0.543 6.543 11 N -0.719 5.719 12 C 0.154 3.846 13 H 0.079 0.921 14 C -0.114 4.114 15 C 0.012 3.988 16 C -0.487 4.487 17 C 0.075 3.925 18 N -0.891 5.891 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.264 1.264 23 C -0.019 4.019 24 C -0.112 4.112 25 C -0.025 4.025 26 C -0.159 4.159 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.392 0.608 35 H 0.036 0.964 36 H 0.054 0.946 37 H 0.007 0.993 38 H 0.061 0.939 39 H 0.264 0.736 40 H 0.019 0.981 41 H 0.035 0.965 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.143 0.857 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.124 10.228 -15.914 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C 0.096 3.904 4 O -0.246 6.246 5 C 0.101 3.899 6 C -0.222 4.222 7 C -0.067 4.067 8 C -0.166 4.166 9 C 0.341 3.659 10 O -0.422 6.422 11 N -0.369 5.369 12 C 0.051 3.949 13 H 0.097 0.903 14 C -0.153 4.153 15 C -0.025 4.025 16 C -0.506 4.506 17 C -0.127 4.127 18 N -0.529 5.529 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.057 4.057 24 C -0.151 4.151 25 C -0.044 4.044 26 C -0.178 4.178 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.227 0.773 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.161 0.839 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.036 10.359 -15.106 26.417 hybrid contribution 0.758 0.454 -0.612 1.074 sum -18.278 10.812 -15.718 26.420 Atomic orbital electron populations 1.22853 0.80003 1.03311 1.00592 1.88075 1.21261 1.28354 1.93575 1.24256 1.00120 0.83499 0.82488 1.86192 1.57489 1.60485 1.20386 1.19174 0.89183 0.92788 0.88756 1.21201 0.99259 1.00519 1.01194 1.21153 0.96636 0.97280 0.91603 1.20066 1.00868 1.01358 0.94317 1.18138 0.80271 0.79829 0.87649 1.90763 1.70774 1.58549 1.22114 1.46353 1.36926 1.38992 1.14605 1.21082 0.89284 0.94381 0.90106 0.90282 1.21935 0.98421 0.93008 1.01912 1.19344 0.93156 0.98068 0.91966 1.20060 0.91532 0.91272 1.47715 1.24841 0.98131 0.95126 0.94601 1.69832 1.19976 1.13805 1.49299 0.86678 0.81345 0.81788 0.78670 1.20391 1.21702 1.18938 1.19794 0.95609 0.96507 0.93832 1.21883 0.95877 0.96557 1.00803 1.21095 0.91188 0.92775 0.99358 1.20404 1.03209 1.03984 0.90207 0.89260 0.93127 0.93618 0.87759 0.87610 0.84567 0.85154 0.77345 0.94570 0.92727 0.97507 0.92067 0.92624 0.96256 0.94632 0.93100 0.94444 0.83922 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.89 101.05 1.10 1.26 16 2 O -0.39 -3.14 10.16 -59.04 -0.60 -3.74 16 3 C 0.21 1.33 6.39 101.05 0.65 1.98 16 4 O -0.33 -3.01 10.18 -42.64 -0.43 -3.44 16 5 C 0.15 1.54 6.64 -39.02 -0.26 1.28 16 6 C -0.20 -2.07 8.75 -39.49 -0.35 -2.42 16 7 C -0.05 -0.54 9.53 -39.21 -0.37 -0.91 16 8 C -0.16 -2.23 5.88 -104.96 -0.62 -2.85 16 9 C 0.55 9.50 7.72 -12.44 -0.10 9.40 16 10 O -0.54 -11.26 16.00 5.29 0.08 -11.18 16 11 N -0.72 -11.88 5.02 -54.87 -0.28 -12.15 16 12 C 0.15 3.08 2.35 -67.97 -0.16 2.92 16 13 H 0.08 1.75 7.58 -51.93 -0.39 1.35 16 14 C -0.11 -2.35 5.40 -26.63 -0.14 -2.49 16 15 C 0.01 0.31 5.97 -27.48 -0.16 0.15 16 16 C -0.49 -12.84 5.51 -98.92 -0.55 -13.38 16 17 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 18 N -0.89 -25.50 12.73 55.43 0.71 -24.79 16 19 Si 0.89 21.21 27.53 -169.99 -4.68 16.53 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.26 -6.14 6.11 56.52 0.35 -5.80 16 23 C -0.02 -0.47 5.59 -27.49 -0.15 -0.62 16 24 C -0.11 -2.41 5.50 -26.64 -0.15 -2.56 16 25 C -0.03 -0.32 9.58 -39.22 -0.38 -0.69 16 26 C -0.16 -1.72 9.97 -39.50 -0.39 -2.11 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.32 8.03 -51.93 -0.42 -0.10 16 29 H 0.05 0.18 8.11 -51.93 -0.42 -0.24 16 30 H 0.10 0.53 6.70 -51.93 -0.35 0.18 16 31 H 0.11 0.39 8.01 -51.93 -0.42 -0.03 16 32 H 0.14 1.15 5.83 -52.49 -0.31 0.85 16 33 H 0.13 1.23 6.39 -52.49 -0.34 0.89 16 34 H 0.39 5.29 6.62 -40.82 -0.27 5.02 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.85 4.59 -51.93 -0.24 0.61 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.14 1.78 7.64 -52.49 -0.40 1.38 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -32.06 363.03 -8.34 -40.40 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.49 Total: 1.99 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.13 Total: -9.09 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.43 Total: -36.94 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.95 Total: -18.36 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.68 Total: 16.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.06 -8.34 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191281397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.853 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds