Wall clock time and date at job start Tue Mar 31 2020 12:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99918 * 2 1 4 4 O 1.20816 * 120.00214 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99652 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.46998 * 179.97438 * 5 3 2 7 7 C 1.38234 * 119.99968 * 90.00269 * 6 5 3 8 8 C 1.38233 * 119.99729 * 179.97438 * 7 6 5 9 9 C 1.38235 * 120.00412 * 359.96814 * 8 7 6 10 10 C 1.50699 * 120.00258 * 180.02562 * 9 8 7 11 11 O 1.42901 * 109.46699 * 90.00180 * 10 9 8 12 12 C 1.42905 * 113.99641 * 179.97438 * 11 10 9 13 13 H 1.08993 * 110.64055 * 26.86435 * 12 11 10 14 14 C 1.55157 * 110.71656 * 150.00029 * 12 11 10 15 15 C 1.54918 * 101.58155 * 154.04156 * 14 12 11 16 16 N 1.47425 * 104.82827 * 322.99497 * 15 14 12 17 17 C 1.36938 * 125.64303 * 204.16846 * 16 15 14 18 18 H 1.08000 * 120.00302 * 179.97438 * 17 16 15 19 19 C 1.38815 * 119.99963 * 359.94942 * 17 16 15 20 20 N 1.31611 * 120.00219 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99684 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47439 * 89.99876 * 21 19 17 23 23 H 1.48500 * 109.46942 * 209.99918 * 21 19 17 24 24 H 1.48502 * 109.47531 * 329.99599 * 21 19 17 25 25 C 1.47015 * 108.70882 * 24.12597 * 16 15 14 26 26 C 1.38237 * 119.99493 * 0.28407 * 9 8 7 27 27 C 1.38230 * 120.00340 * 359.53006 * 26 9 8 28 28 H 1.09004 * 109.46787 * 300.00475 * 1 2 3 29 29 H 1.08999 * 109.46676 * 59.99765 * 1 2 3 30 30 H 1.08992 * 109.47152 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47426 * 59.99474 * 5 3 2 32 32 H 1.09001 * 109.47281 * 299.99452 * 5 3 2 33 33 H 1.07999 * 120.00335 * 359.97438 * 7 6 5 34 34 H 1.08006 * 119.99997 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46981 * 330.00654 * 10 9 8 36 36 H 1.08995 * 109.47169 * 210.00454 * 10 9 8 37 37 H 1.09001 * 111.00846 * 272.11864 * 14 12 11 38 38 H 1.09000 * 111.00346 * 35.97396 * 14 12 11 39 39 H 1.08999 * 110.35942 * 81.82689 * 15 14 12 40 40 H 1.08996 * 110.36556 * 204.15522 * 15 14 12 41 41 H 0.97005 * 120.00154 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.88350 * 239.52260 * 25 16 15 43 43 H 1.08998 * 109.88602 * 118.35926 * 25 16 15 44 44 H 1.08000 * 119.99874 * 179.72642 * 26 9 8 45 45 H 1.07992 * 120.00316 * 180.23157 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 3.9937 2.7200 -0.0011 7 6 4.1902 3.3830 1.1958 8 6 4.5827 4.7085 1.1953 9 6 4.7793 5.3707 -0.0021 10 6 5.2078 6.8155 -0.0026 11 8 6.6349 6.8890 -0.0025 12 6 7.1481 8.2228 -0.0036 13 1 6.4368 8.9085 0.4567 14 6 8.5181 8.2843 0.7221 15 6 9.1710 9.5179 0.0499 16 7 8.7437 9.4500 -1.3594 17 6 9.4011 10.0128 -2.4206 18 1 9.0051 9.9057 -3.4196 19 6 10.5765 10.7214 -2.2123 20 7 11.0587 10.8528 -0.9947 21 14 11.4737 11.4885 -3.6601 22 1 10.9722 12.8691 -3.8780 23 1 12.9302 11.5303 -3.3739 24 1 11.2319 10.6758 -4.8792 25 6 7.4954 8.6771 -1.4370 26 6 4.5778 4.7090 -1.1990 27 6 4.1890 3.3825 -1.1985 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9558 0.7808 -0.8907 32 1 3.9565 0.7806 0.8892 33 1 4.0371 2.8656 2.1313 34 1 4.7366 5.2265 2.1304 35 1 4.8184 7.3102 0.8872 36 1 4.8185 7.3096 -0.8928 37 1 8.3867 8.4461 1.7920 38 1 9.1009 7.3826 0.5336 39 1 8.8101 10.4368 0.5119 40 1 10.2570 9.4579 0.1204 41 1 11.8802 11.3476 -0.8492 42 1 7.6375 7.8068 -2.0776 43 1 6.6954 9.3036 -1.8314 44 1 4.7271 5.2276 -2.1345 45 1 4.0352 2.8646 -2.1336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223477488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:59 Heat of formation + Delta-G solvation = -77.396558 kcal Electronic energy + Delta-G solvation = -25534.521475 eV Core-core repulsion = 21711.101015 eV Total energy + Delta-G solvation = -3823.420460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91551 -39.52676 -38.20794 -36.84899 -35.89501 -33.58104 -32.10812 -31.05541 -29.88782 -29.06398 -27.80977 -26.94710 -25.09214 -24.15830 -22.88202 -21.87803 -20.65963 -20.17437 -20.08268 -18.00959 -17.12616 -16.98022 -16.93755 -16.61893 -16.00018 -15.73374 -15.27903 -14.70797 -14.54254 -14.06075 -14.01817 -13.84325 -13.62977 -13.41997 -13.29530 -12.63338 -12.55843 -12.45038 -12.36026 -12.18604 -11.69086 -11.44720 -11.22081 -11.20293 -11.14777 -10.99386 -10.87638 -10.85130 -10.76159 -10.24120 -10.09360 -9.75889 -9.52695 -9.08762 -8.98681 -8.80146 -8.63465 -6.81676 -5.63416 -3.05148 1.03545 1.33756 1.85107 2.39141 3.41784 3.46362 3.48630 3.54037 4.18901 4.24837 4.51879 4.52592 4.60356 4.69497 4.76630 4.85847 4.86349 4.96422 5.06968 5.11635 5.29416 5.33999 5.37885 5.48829 5.51445 5.58040 5.63127 5.78470 5.81876 5.89637 5.96578 6.00447 6.26231 6.35741 6.37057 6.55261 6.56673 6.62251 6.68143 6.75637 6.86380 7.38304 7.51397 7.64645 7.65998 7.87287 8.37667 9.23695 9.84507 10.49122 11.40705 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.001928 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.196093 B =14517.003605 C =14909.323908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.495 6.495 5 C -0.071 4.071 6 C -0.083 4.083 7 C -0.106 4.106 8 C -0.098 4.098 9 C -0.075 4.075 10 C 0.099 3.901 11 O -0.370 6.370 12 C 0.075 3.925 13 H 0.063 0.937 14 C -0.139 4.139 15 C 0.152 3.848 16 N -0.602 5.602 17 C -0.221 4.221 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.916 3.084 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.118 3.882 26 C -0.096 4.096 27 C -0.105 4.105 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.013 0.987 40 H 0.111 0.889 41 H 0.252 0.748 42 H 0.033 0.967 43 H 0.020 0.980 44 H 0.127 0.873 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.927 -21.255 5.186 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.381 6.381 5 C -0.108 4.108 6 C -0.083 4.083 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.075 4.075 10 C 0.022 3.978 11 O -0.289 6.289 12 C 0.017 3.983 13 H 0.081 0.919 14 C -0.177 4.177 15 C 0.027 3.973 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.746 3.254 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.008 4.008 26 C -0.114 4.114 27 C -0.123 4.123 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.031 0.969 40 H 0.128 0.872 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.038 0.962 44 H 0.145 0.855 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.864 -20.993 5.134 28.686 hybrid contribution -0.056 0.740 -0.748 1.053 sum -18.920 -20.253 4.387 28.061 Atomic orbital electron populations 1.23268 0.76225 1.03683 1.02658 1.86504 1.23548 1.33585 1.84368 1.23767 0.92012 0.81372 0.72751 1.90714 1.67022 1.36243 1.44133 1.20299 0.87692 0.95993 1.06808 1.19199 1.01343 0.93694 0.94049 1.20908 0.99678 0.94715 0.97095 1.21021 0.98479 0.94285 0.97793 1.19732 0.98831 0.95488 0.93422 1.21324 0.83319 0.92319 1.00819 1.88008 1.18257 1.27662 1.95010 1.23267 0.95768 0.82216 0.97063 0.91874 1.23166 0.94490 1.01830 0.98233 1.21962 1.02070 0.90781 0.82440 1.44389 1.23102 1.61515 1.03928 1.19092 1.03204 1.25827 0.86807 0.90459 1.24797 0.98222 1.00865 0.96886 1.69779 1.22784 1.46172 1.18467 0.86050 0.78965 0.79077 0.81276 1.21657 1.21618 1.20692 1.21672 0.89914 0.94824 0.94390 1.21064 0.98096 0.94272 0.97956 1.20930 0.99519 0.94708 0.97136 0.91872 0.91847 0.88065 0.86628 0.86651 0.86092 0.85696 0.92692 0.92480 0.92053 0.91150 0.96862 0.87184 0.93706 0.94860 0.96224 0.85536 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.88 10.57 -39.26 -0.41 -3.30 16 3 C 0.46 4.22 7.95 36.01 0.29 4.51 16 4 O -0.49 -6.25 15.78 -18.74 -0.30 -6.54 16 5 C -0.07 -0.49 5.94 -29.03 -0.17 -0.67 16 6 C -0.08 -0.83 4.37 -104.62 -0.46 -1.29 16 7 C -0.11 -1.11 9.70 -39.58 -0.38 -1.49 16 8 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 9 C -0.07 -0.98 5.51 -104.62 -0.58 -1.56 16 10 C 0.10 1.38 5.90 36.01 0.21 1.59 16 11 O -0.37 -6.52 10.06 -35.23 -0.35 -6.87 16 12 C 0.07 1.42 3.44 -24.90 -0.09 1.33 16 13 H 0.06 1.10 7.82 -51.93 -0.41 0.69 16 14 C -0.14 -2.81 6.81 -24.58 -0.17 -2.97 16 15 C 0.15 3.81 5.89 -2.52 -0.01 3.79 16 16 N -0.60 -16.06 3.39 -170.07 -0.58 -16.63 16 17 C -0.22 -6.33 10.27 -15.06 -0.15 -6.48 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 20 N -0.92 -27.25 10.09 55.49 0.56 -26.69 16 21 Si 0.92 22.37 29.55 -169.99 -5.02 17.34 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.12 2.63 7.02 -3.07 -0.02 2.61 16 26 C -0.10 -1.18 9.70 -39.58 -0.38 -1.57 16 27 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 28 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.12 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.12 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.11 3.06 5.87 -51.93 -0.31 2.76 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -34.19 378.14 -9.13 -43.32 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.00 Total: -1.88 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.72 Total: -4.44 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.02 Total: -43.33 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -1.07 Total: -16.71 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.19 -9.13 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223477488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.077 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds